MELO3C029641.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C029641.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr02 : 16241778 .. 16242107 (-)
Sequence length330
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACCGCAAAGTCTACGAGTGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTCTGCATAGTCATTTTAGCACCACCAGTGACGGCCCACACGATGGCAGAAGCACCAAGTCCATTATTAGTACTACTTGATCAGGATTCATCTTTCTCAAACTGCGCTCCTTTTATTTTAGAAGCGACAATGTGTATGGTGGATGTAATCAAGCTTCCTGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCGAAATTTATCAACATATTCCTGGCATGGATGTGATTAAGAAAATCTGTGGCCTATGA

mRNA sequence

ATGGAGACCGCAAAGTCTACGAGTGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTCTGCATAGTCATTTTAGCACCACCAGTGACGGCCCACACGATGGCAGAAGCACCAAGTCCATTATTAGTACTACTTGATCAGGATTCATCTTTCTCAAACTGCGCTCCTTTTATTTTAGAAGCGACAATGTGTATGGTGGATGTAATCAAGCTTCCTGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCGAAATTTATCAACATATTCCTGGCATGGATGTGATTAAGAAAATCTGTGGCCTATGA

Coding sequence (CDS)

ATGGAGACCGCAAAGTCTACGAGTGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTCTGCATAGTCATTTTAGCACCACCAGTGACGGCCCACACGATGGCAGAAGCACCAAGTCCATTATTAGTACTACTTGATCAGGATTCATCTTTCTCAAACTGCGCTCCTTTTATTTTAGAAGCGACAATGTGTATGGTGGATGTAATCAAGCTTCCTGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCGAAATTTATCAACATATTCCTGGCATGGATGTGATTAAGAAAATCTGTGGCCTATGA

Protein sequence

METAKSTSASTIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL
Homology
[Close]
BLAST of MELO3C029641.2.1 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 2.1e-45
Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 0 

Query: 1   METAKSTSASTIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQ-DSSFSNCAPFIL 60
           ME  KSTSASTIRLA+VFLVCIVILAP VTA TMAEAPSP+LVL D+ DSSFSNCAPFIL
Sbjct: 1   MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL 60

Query: 61  EATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 110
           EATMC+VDVIKLPVA HPSCCKAISDLNDCAP+IYQHIP MDVIKKICGL
Sbjct: 61  EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL 110

[Close]
BLAST of MELO3C029641.2.1 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 4.5e-16
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 0 

Query: 4   AKSTSASTIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63
           AKS    T++L LVF+ C  I APP  A  +A AP+       +D SF  C  F+ EAT 
Sbjct: 3   AKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATK 62

Query: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMD--VIKKIC 108
           CM+DV K P+A HP+CCKAIS L  C+   +  IP  D  VIK +C
Sbjct: 63  CMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of MELO3C029641.2.1 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-15
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0 

Query: 10  STIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMCMVDVI 69
           ++++L ++FLVCI ILA PV    M    + L     +D +  NC  F  EAT CM+DV+
Sbjct: 3   ASLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVM 62

Query: 70  KLPVAPHPSCCKAISDLNDCAPEIYQHIPGMD--VIKKICGL 110
           K  + PHPSCC+AI  LNDC PE+Y+ +P  D  +IKKIC L
Sbjct: 63  KNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

[Close]
BLAST of MELO3C029641.2.1 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.4e-45
Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 0 

Query: 1   METAKSTSASTIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQ-DSSFSNCAPFIL 60
           ME  KSTSASTIRLA+VFLVCIVILAP VTA TMAEAPSP+LVL D+ DSSFSNCAPFIL
Sbjct: 1   MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL 60

Query: 61  EATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 110
           EATMC+VDVIKLPVA HPSCCKAISDLNDCAP+IYQHIP MDVIKKICGL
Sbjct: 61  EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL 110

[Close]
BLAST of MELO3C029641.2.1 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 0 

Query: 4   AKSTSASTIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63
           AKS    T++L LVF+ C  I APP  A  +A AP+       +D SF  C  F+ EAT 
Sbjct: 3   AKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATK 62

Query: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMD--VIKKIC 108
           CM+DV K P+A HP+CCKAIS L  C+   +  IP  D  VIK +C
Sbjct: 63  CMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of MELO3C029641.2.1 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-15
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0 

Query: 10  STIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMCMVDVI 69
           ++++L ++FLVCI ILA PV    M    + L     +D +  NC  F  EAT CM+DV+
Sbjct: 3   ASLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVM 62

Query: 70  KLPVAPHPSCCKAISDLNDCAPEIYQHIPGMD--VIKKICGL 110
           K  + PHPSCC+AI  LNDC PE+Y+ +P  D  +IKKIC L
Sbjct: 63  KNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

The following BLAST results are available for this feature:
BLAST of MELO3C029641.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65190.12.1e-4588.18hypothetical protein Csa_1G263450 [Cucumis sativus][more]
KGN65096.14.5e-1646.23hypothetical protein Csa_1G212820 [Cucumis sativus][more]
KGN65195.12.9e-1547.06hypothetical protein Csa_1G263980 [Cucumis sativus][more]
BLAST of MELO3C029641.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029641.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029641.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA1.4e-4588.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA3.0e-1646.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1[more]
tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA1.9e-1547.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C029641.2MELO3C029641.2gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029641.2.1.CDS.1MELO3C029641.2.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029641.2.1.exon.1MELO3C029641.2.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C029641.2.1MELO3C029641.2.1-proteinpolypeptide