Csa1G263450 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G263450
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 12702948 .. 12703280 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCACAAAGTCTACGAGTGCATCCACCATAAGGTTAGCAATTGTATTCCTAGTCTGCATAGTCATTTTAGCTCCGTCAGTGACGGCCCGCACGATGGCAGAAGCACCAAGTCCAGTATTAGTACTATTTGATGAGGATGATTCATCTTTCTCAAACTGCGCCCCTTTTATTTTAGAAGCGACAATGTGTGTGGTAGATGTGATCAAGCTTCCAGTTGCTTCTCATCCTTCTTGCTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCCAAATTTATCAACATATTCCTGACATGGATGTGATTAAGAAAATATGTGGCCTATGA

mRNA sequence

ATGGAGGCCACAAAGTCTACGAGTGCATCCACCATAAGGTTAGCAATTGTATTCCTAGTCTGCATAGTCATTTTAGCTCCGTCAGTGACGGCCCGCACGATGGCAGAAGCACCAAGTCCAGTATTAGTACTATTTGATGAGGATGATTCATCTTTCTCAAACTGCGCCCCTTTTATTTTAGAAGCGACAATGTGTGTGGTAGATGTGATCAAGCTTCCAGTTGCTTCTCATCCTTCTTGCTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCCAAATTTATCAACATATTCCTGACATGGATGTGATTAAGAAAATATGTGGCCTATGA

Coding sequence (CDS)

ATGGAGGCCACAAAGTCTACGAGTGCATCCACCATAAGGTTAGCAATTGTATTCCTAGTCTGCATAGTCATTTTAGCTCCGTCAGTGACGGCCCGCACGATGGCAGAAGCACCAAGTCCAGTATTAGTACTATTTGATGAGGATGATTCATCTTTCTCAAACTGCGCCCCTTTTATTTTAGAAGCGACAATGTGTGTGGTAGATGTGATCAAGCTTCCAGTTGCTTCTCATCCTTCTTGCTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCCAAATTTATCAACATATTCCTGACATGGATGTGATTAAGAAAATATGTGGCCTATGA

Protein sequence

MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL*
Homology
[Close]
BLAST of Csa1G263450 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.2e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL 60
           MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL
Sbjct: 1   MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL 60

Query: 61  EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL 111
           EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL
Sbjct: 61  EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL 110

[Close]
BLAST of Csa1G263450 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-16
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 1 

Query: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEA 62
           A KS    T++L +VF+ C  I AP   A  +A AP+     F  +D SF  C  F+ EA
Sbjct: 2   AAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQP-FPTEDISFFPCFSFVPEA 61

Query: 63  TMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 109
           T C++DV K P+A+HP+CCKAIS L  C+   +  IP  DM VIK +C
Sbjct: 62  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of Csa1G263450 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.1e-16
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1 

Query: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69
           ++++L I+FLVCI ILA  V  RT     +  L  F   D +  NC  F  EAT C++DV
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTRT-----TTTLDQFSTKDVASVNCTVFTFEATKCMIDV 62

Query: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIPDMD--VIKKICGL 111
           +K  +  HPSCC+AI  LNDC P++Y+ +P  D  +IKKIC L
Sbjct: 63  MKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

[Close]
BLAST of Csa1G263450 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL 60
           MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL
Sbjct: 1   MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL 60

Query: 61  EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL 111
           EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL
Sbjct: 61  EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL 110

[Close]
BLAST of Csa1G263450 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-16
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 1 

Query: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEA 62
           A KS    T++L +VF+ C  I AP   A  +A AP+     F  +D SF  C  F+ EA
Sbjct: 2   AAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQP-FPTEDISFFPCFSFVPEA 61

Query: 63  TMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 109
           T C++DV K P+A+HP+CCKAIS L  C+   +  IP  DM VIK +C
Sbjct: 62  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of Csa1G263450 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1 

Query: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69
           ++++L I+FLVCI ILA  V  RT     +  L  F   D +  NC  F  EAT C++DV
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTRT-----TTTLDQFSTKDVASVNCTVFTFEATKCMIDV 62

Query: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIPDMD--VIKKICGL 111
           +K  +  HPSCC+AI  LNDC P++Y+ +P  D  +IKKIC L
Sbjct: 63  MKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

The following BLAST results are available for this feature:
BLAST of Csa1G263450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTD6_CUCSA5.2e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1[more]
A0A0A0LYQ3_CUCSA1.6e-1644.44Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1[more]
A0A0A0LTE1_CUCSA8.1e-1645.63Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1[more]
BLAST of Csa1G263450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210094|gb|KGN65190.1|7.5e-55100.00hypothetical protein Csa_1G263450 [Cucumis sativus][more]
gi|700210000|gb|KGN65096.1|2.3e-1644.44hypothetical protein Csa_1G212820 [Cucumis sativus][more]
gi|700210099|gb|KGN65195.1|1.2e-1545.63hypothetical protein Csa_1G263980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G263450.1Csa1G263450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G263450MELO3C010284Melon (DHL92) v3.5.1cumeB057
Csa1G263450MELO3C029641.2Melon (DHL92) v3.6.1cumedB049
Csa1G263450CsGy1G016400Cucumber (Gy14) v2cgybcuB008
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G263450Wax gourdcuwgoB099
Csa1G263450Cucumber (Chinese Long) v2cucuB009
Csa1G263450Cucumber (Gy14) v1cgycuB095
Csa1G263450Cucurbita maxima (Rimu)cmacuB060
Csa1G263450Cucurbita moschata (Rifu)cmocuB048
Csa1G263450Watermelon (Charleston Gray)cuwcgB067
Csa1G263450Watermelon (97103) v1cuwmB080
Csa1G263450Cucurbita pepo (Zucchini)cpecuB350
Csa1G263450Bottle gourd (USVL1VR-Ls)culsiB011
Csa1G263450Bottle gourd (USVL1VR-Ls)culsiB073
Csa1G263450Cucumber (Gy14) v2cgybcuB003
Csa1G263450Silver-seed gourdcarcuB0133
Csa1G263450Watermelon (97103) v2cuwmbB066