MELO3C010284 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010284
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein of unknown function (DUF1278)
Location	chr2 : 15526237 .. 15526821 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCCAACCAAAAACACAGCCTCAGTCCTCACCACTGTTTCCCTAATTCAATCCTTCTCTTAATTAACAACCATTTTCACGCTCCCAATTGAAATAACCATGGCCTCAATTAAGCTACCACTTGTATTCTTTGTTTGCATGGCCATTTCAGCAGTATCCGGCATTGCACACACCGGGGCAGCGGCACCTTCTGATCCTTTCACAGCAGAAGAATTGTCATTGTTGGGTTGCACATCCTTCATTTCTGAGGCAACAAAATGTGTGATTGATGTAATGAAAAATGCAGTTGCTCCTCATCCATCATGTTGCAAAGCATTTTCTAAGCTCAATGACTGTTCCCCTGAGTTTCTCAAAGGCATTCCCTCGGCTGACATGATTTTGATTAAAGGAATTTGTGCTTTGTGGGGTGTTTGATCAATTTCCTAGACTAAAGCATTTTTTAGTTAATATATATAGGATCATTAGGAATAACAACATTATCATTTCTCCTCTACCTATTTTATGGATTTGAAGAAAGAGTGGATTTTGTTAGAGGGAAAATGTGTTGTTTGATCCGTTAATTGAATGAGAACTTAACATTTTGTT

mRNA sequence

ACTCCAACCAAAAACACAGCCTCAGTCCTCACCACTGTTTCCCTAATTCAATCCTTCTCTTAATTAACAACCATTTTCACGCTCCCAATTGAAATAACCATGGCCTCAATTAAGCTACCACTTGTATTCTTTGTTTGCATGGCCATTTCAGCAGTATCCGGCATTGCACACACCGGGGCAGCGGCACCTTCTGATCCTTTCACAGCAGAAGAATTGTCATTGTTGGGTTGCACATCCTTCATTTCTGAGGCAACAAAATGTGTGATTGATGTAATGAAAAATGCAGTTGCTCCTCATCCATCATGTTGCAAAGCATTTTCTAAGCTCAATGACTGTTCCCCTGAGTTTCTCAAAGGCATTCCCTCGGCTGACATGATTTTGATTAAAGGAATTTGTGCTTTGTGGGGTGTTTGATCAATTTCCTAGACTAAAGCATTTTTTAGTTAATATATATAGGATCATTAGGAATAACAACATTATCATTTCTCCTCTACCTATTTTATGGATTTGAAGAAAGAGTGGATTTTGTTAGAGGGAAAATGTGTTGTTTGATCCGTTAATTGAATGAGAACTTAACATTTTGTT

Coding sequence (CDS)

ATGGCCTCAATTAAGCTACCACTTGTATTCTTTGTTTGCATGGCCATTTCAGCAGTATCCGGCATTGCACACACCGGGGCAGCGGCACCTTCTGATCCTTTCACAGCAGAAGAATTGTCATTGTTGGGTTGCACATCCTTCATTTCTGAGGCAACAAAATGTGTGATTGATGTAATGAAAAATGCAGTTGCTCCTCATCCATCATGTTGCAAAGCATTTTCTAAGCTCAATGACTGTTCCCCTGAGTTTCTCAAAGGCATTCCCTCGGCTGACATGATTTTGATTAAAGGAATTTGTGCTTTGTGGGGTGTTTGA

Protein sequence

MASIKLPLVFFVCMAISAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV*

Homology

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BLAST of MELO3C010284 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-23
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 1   MASIKLPLVFFVCMAISAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60
           +AS+KLP++F VC+AI A+  +  T      D F+ ++++ + CT F  EATKC+IDVMK
Sbjct: 2   VASLKLPIIFLVCIAILALPVMTRTTTTL--DQFSTKDVASVNCTVFTFEATKCMIDVMK 61

Query: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 104
           N++ PHPSCC+A  KLNDC+PE  K +PS D  LIK IC LWG
Sbjct: 62  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of MELO3C010284 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-22
Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 1


Query: 3   SIKLPLVFFVCMAISAVSGIAHTGAAAPSDP--FTAEELSLLGCTSFISEATKCVIDVMK 62
           ++KL LVF  C AI A    A   A AP+ P  F  E++S   C SF+ EATKC+IDV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 63  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 104
           + +A HP+CCKA SKL  CS  F  GIPSADMI+IK +C  WG
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWG 112

[Close]

BLAST of MELO3C010284 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.1e-17
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 2   ASIKLPLVFFVCMAISAVSGIAHTGAAAPSDP---FTAEELSLLGCTSFISEATKCVIDV 61
           ++I+L +VF VC+ I A S  A T A APS     F  ++ S   C  FI EAT CV+DV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 62  MKNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICAL 102
           +K  VA HPSCCKA S LNDC+P+  + IP  DM +IK IC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]

BLAST of MELO3C010284 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-23
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 1   MASIKLPLVFFVCMAISAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60
           +AS+KLP++F VC+AI A+  +  T      D F+ ++++ + CT F  EATKC+IDVMK
Sbjct: 2   VASLKLPIIFLVCIAILALPVMTRTTTTL--DQFSTKDVASVNCTVFTFEATKCMIDVMK 61

Query: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 104
           N++ PHPSCC+A  KLNDC+PE  K +PS D  LIK IC LWG
Sbjct: 62  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of MELO3C010284 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-22
Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 1


Query: 3   SIKLPLVFFVCMAISAVSGIAHTGAAAPSDP--FTAEELSLLGCTSFISEATKCVIDVMK 62
           ++KL LVF  C AI A    A   A AP+ P  F  E++S   C SF+ EATKC+IDV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 63  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 104
           + +A HP+CCKA SKL  CS  F  GIPSADMI+IK +C  WG
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWG 112

[Close]

BLAST of MELO3C010284 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 2   ASIKLPLVFFVCMAISAVSGIAHTGAAAPSDP---FTAEELSLLGCTSFISEATKCVIDV 61
           ++I+L +VF VC+ I A S  A T A APS     F  ++ S   C  FI EAT CV+DV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 62  MKNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICAL 102
           +K  VA HPSCCKA S LNDC+P+  + IP  DM +IK IC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

The following BLAST results are available for this feature:

BLAST of MELO3C010284 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTE1_CUCSA	1.0e-23	52.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1	[more]
A0A0A0LYQ3_CUCSA	1.9e-22	53.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1	[more]
A0A0A0LTD6_CUCSA	9.1e-17	50.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1	[more]

BLAST of MELO3C010284 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210099\|gb\|KGN65195.1\|	1.4e-23	52.43	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]
gi\|700210000\|gb\|KGN65096.1\|	2.7e-22	53.40	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]
gi\|700210094\|gb\|KGN65190.1\|	1.3e-16	50.49	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU52848	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010284T1	MELO3C010284T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU52848	MU52848	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010284	Csa1G212820	Cucumber (Chinese Long) v2	cumeB047
MELO3C010284	Csa1G263450	Cucumber (Chinese Long) v2	cumeB057
MELO3C010284	Cla012181	Watermelon (97103) v1	mewmB293
MELO3C010284	ClCG06G011810	Watermelon (Charleston Gray)	mewcgB258
MELO3C010284	Cla97C06G120970	Watermelon (97103) v2	mewmbB265
MELO3C010284	Bhi02G000748	Wax gourd	mewgoB290
MELO3C010284	CSPI01G17030	Wild cucumber (PI 183967)	cpimeB057
MELO3C010284	CmaCh10G005090	Cucurbita maxima (Rimu)	cmameB058
MELO3C010284	CmoCh10G005450	Cucurbita moschata (Rifu)	cmomeB049
MELO3C010284	Lsi06G010260	Bottle gourd (USVL1VR-Ls)	lsimeB403
MELO3C010284	Cp4.1LG18g05380	Cucurbita pepo (Zucchini)	cpemeB334
MELO3C010284	Cp4.1LG04g09130	Cucurbita pepo (Zucchini)	cpemeB621

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010284	Cucurbita pepo (Zucchini)	cpemeB716
MELO3C010284	Bottle gourd (USVL1VR-Ls)	lsimeB295
MELO3C010284	Bottle gourd (USVL1VR-Ls)	lsimeB399
MELO3C010284	Cucumber (Gy14) v2	cgybmeB049
MELO3C010284	Silver-seed gourd	carmeB0131
MELO3C010284	Silver-seed gourd	carmeB0578
MELO3C010284	Silver-seed gourd	carmeB0664
MELO3C010284	Cucumber (Chinese Long) v3	cucmeB054
MELO3C010284	Watermelon (97103) v2	mewmbB256
MELO3C010284	Cucurbita moschata (Rifu)	cmomeB098
MELO3C010284	Cucurbita maxima (Rimu)	cmameB022
MELO3C010284	Cucurbita maxima (Rimu)	cmameB105
MELO3C010284	Cucurbita moschata (Rifu)	cmomeB011
MELO3C010284	Watermelon (Charleston Gray)	mewcgB250
MELO3C010284	Watermelon (97103) v1	mewmB276