CSPI01G17030 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G17030
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 12842494 .. 12842935 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGGACTATTGATCCTTAGCGAGTAATTTAAAACTTTCTTATTCAATCATTCTCTTAACCTATTTCATCATATTCAATTTTAGTACCAACGTCCAATGGCAACATCAGCTACCAAGTTACCACTTGTACTAATATTGCTATGCATTGCCATTTTAGCATCGTCTGTAGCGGCTCGTCCACCGATGGTGGGAGCAGCAGCGCCTAGTAAGCCATTGGGAACGGAGGAATATTTCTCTTTGTTCCCATGCATATCATTAGTTCCTCAAGCCACAAAATGTGTTATTGATGTGCTTAACAATACGGTTGCTCCTCATCCTTCTTGTTGCGAAGCCATTTCTAAACTCAACGATTGTTCGTCCAACTTTCTCAAAGACATCCCCACAGGCAAAATGATTTTGGTTAAGAGCGTTTGTGCTTCATGGGGAGTTTCTATTCCTTAG

mRNA sequence

ATGGCAACATCAGCTACCAAGTTACCACTTGTACTAATATTGCTATGCATTGCCATTTTAGCATCGTCTGTAGCGGCTCGTCCACCGATGGTGGGAGCAGCAGCGCCTAGTAAGCCATTGGGAACGGAGGAATATTTCTCTTTGTTCCCATGCATATCATTAGTTCCTCAAGCCACAAAATGTGTTATTGATGTGCTTAACAATACGGTTGCTCCTCATCCTTCTTGTTGCGAAGCCATTTCTAAACTCAACGATTGTTCGTCCAACTTTCTCAAAGACATCCCCACAGGCAAAATGATTTTGGTTAAGAGCGTTTGTGCTTCATGGGGAGTTTCTATTCCTTAG

Coding sequence (CDS)

ATGGCAACATCAGCTACCAAGTTACCACTTGTACTAATATTGCTATGCATTGCCATTTTAGCATCGTCTGTAGCGGCTCGTCCACCGATGGTGGGAGCAGCAGCGCCTAGTAAGCCATTGGGAACGGAGGAATATTTCTCTTTGTTCCCATGCATATCATTAGTTCCTCAAGCCACAAAATGTGTTATTGATGTGCTTAACAATACGGTTGCTCCTCATCCTTCTTGTTGCGAAGCCATTTCTAAACTCAACGATTGTTCGTCCAACTTTCTCAAAGACATCCCCACAGGCAAAATGATTTTGGTTAAGAGCGTTTGTGCTTCATGGGGAGTTTCTATTCCTTAG

Homology

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BLAST of CSPI01G17030 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 1


Query: 1   MATSATKLP---LVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQ 60
           MA  + K P   L+L+ +C   + +  AA   +  A    +P  TE+  S FPC S VP+
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTED-ISFFPCFSFVPE 60

Query: 61  ATKCVIDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCASWGVSI 114
           ATKC+IDV  + +A HP+CC+AISKL  CSS+F   IP+  MI++KSVC SWG SI
Sbjct: 61  ATKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASI 115

[Close]

BLAST of CSPI01G17030 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 1


Query: 4   SATKLPLVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVI 63
           ++ KLP++  L+CIAILA      P M           T++  S+  C     +ATKC+I
Sbjct: 3   ASLKLPIIF-LVCIAILAL-----PVMTRTTTTLDQFSTKDVASV-NCTVFTFEATKCMI 62

Query: 64  DVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCASWG 111
           DV+ N++ PHPSCC AI KLNDC+    KD+P+    L+K +C  WG
Sbjct: 63  DVMKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of CSPI01G17030 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 2   ATSATKLPLVLI-LLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATK 61
           +TSA+ + L ++ L+CI ILA SV AR  M  A +P   L  E+  S   C   + +AT 
Sbjct: 6   STSASTIRLAIVFLVCIVILAPSVTART-MAEAPSPVLVLFDEDDSSFSNCAPFILEATM 65

Query: 62  CVIDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVC 107
           CV+DV+   VA HPSCC+AIS LNDC+    + IP   M ++K +C
Sbjct: 66  CVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 108

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BLAST of CSPI01G17030 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 8.1e-20
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 1


Query: 1   MATSATKLP---LVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQ 60
           MA  + K P   L+L+ +C   + +  AA   +  A    +P  TE+  S FPC S VP+
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTED-ISFFPCFSFVPE 60

Query: 61  ATKCVIDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCASWGVSI 114
           ATKC+IDV  + +A HP+CC+AISKL  CSS+F   IP+  MI++KSVC SWG SI
Sbjct: 61  ATKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASI 115

[Close]

BLAST of CSPI01G17030 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 1


Query: 4   SATKLPLVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVI 63
           ++ KLP++  L+CIAILA      P M           T++  S+  C     +ATKC+I
Sbjct: 3   ASLKLPIIF-LVCIAILAL-----PVMTRTTTTLDQFSTKDVASV-NCTVFTFEATKCMI 62

Query: 64  DVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCASWG 111
           DV+ N++ PHPSCC AI KLNDC+    KD+P+    L+K +C  WG
Sbjct: 63  DVMKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of CSPI01G17030 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 2   ATSATKLPLVLI-LLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATK 61
           +TSA+ + L ++ L+CI ILA SV AR  M  A +P   L  E+  S   C   + +AT 
Sbjct: 6   STSASTIRLAIVFLVCIVILAPSVTART-MAEAPSPVLVLFDEDDSSFSNCAPFILEATM 65

Query: 62  CVIDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVC 107
           CV+DV+   VA HPSCC+AIS LNDC+    + IP   M ++K +C
Sbjct: 66  CVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 108

The following BLAST results are available for this feature:

BLAST of CSPI01G17030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G17030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYQ3_CUCSA	5.6e-20	46.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1	[more]
A0A0A0LTE1_CUCSA	1.9e-12	41.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1	[more]
A0A0A0LTD6_CUCSA	1.8e-10	43.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1	[more]

BLAST of CSPI01G17030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G17030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210000\|gb\|KGN65096.1\|	8.1e-20	46.55	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]
gi\|700210099\|gb\|KGN65195.1\|	2.8e-12	41.12	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]
gi\|700210094\|gb\|KGN65190.1\|	2.6e-10	43.40	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G17030.1	CSPI01G17030.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G17030	Cla012180	Watermelon (97103) v1	cpiwmB086
CSPI01G17030	MELO3C010284	Melon (DHL92) v3.5.1	cpimeB057
CSPI01G17030	ClCG06G011830	Watermelon (Charleston Gray)	cpiwcgB071

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G17030	Melon (DHL92) v3.6.1	cpimedB051
CSPI01G17030	Silver-seed gourd	carcpiB0138
CSPI01G17030	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G17030	Watermelon (97103) v2	cpiwmbB068
CSPI01G17030	Wax gourd	cpiwgoB099
CSPI01G17030	Cucurbita pepo (Zucchini)	cpecpiB351
CSPI01G17030	Cucurbita pepo (Zucchini)	cpecpiB640