Cla97C06G120970 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G120970
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr06 : 23365629 .. 23365964 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCCTACTCTGCGTAGCCATTATAGCATCATCGGTAACGGCTCGCCTGGGAGTGGTGCCAGCAGCAGCGCCTAATCCATTGGTAACAAAGGATTTCTCTTTGTTTCCATGCATATCATTTGTTCCTCAGGCGACGAAATGTGTGATTGATGTGCTTAAGAATGTGGTTGCTCCCCATCCTTCTTGTTGTGAAGCCATTTCTAAACTCTATAATTGTTCTTCAAAGTTTCTCAAAGACATTCCCTCTGAGGATATGATTTTGGTTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATTTCTTAA

mRNA sequence

ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCCTACTCTGCGTAGCCATTATAGCATCATCGGTAACGGCTCGCCTGGGAGTGGTGCCAGCAGCAGCGCCTAATCCATTGGTAACAAAGGATTTCTCTTTGTTTCCATGCATATCATTTGTTCCTCAGGCGACGAAATGTGTGATTGATGTGCTTAAGAATGTGGTTGCTCCCCATCCTTCTTGTTGTGAAGCCATTTCTAAACTCTATAATTGTTCTTCAAAGTTTCTCAAAGACATTCCCTCTGAGGATATGATTTTGGTTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATTTCTTAA

Coding sequence (CDS)

ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCCTACTCTGCGTAGCCATTATAGCATCATCGGTAACGGCTCGCCTGGGAGTGGTGCCAGCAGCAGCGCCTAATCCATTGGTAACAAAGGATTTCTCTTTGTTTCCATGCATATCATTTGTTCCTCAGGCGACGAAATGTGTGATTGATGTGCTTAAGAATGTGGTTGCTCCCCATCCTTCTTGTTGTGAAGCCATTTCTAAACTCTATAATTGTTCTTCAAAGTTTCTCAAAGACATTCCCTCTGAGGATATGATTTTGGTTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATTTCTTAA

Protein sequence

MATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVKSVCALWGVSIS

Homology

[Close]

BLAST of Cla97C06G120970 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   MATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVI 60
           + T   KL LV + C AI A    A    +    P P  T+D S FPC SFVP+ATKC+I
Sbjct: 6   LKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMI 65

Query: 61  DVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVKSVCALWGVSIS 112
           DV K+ +A HP+CC+AISKL +CSS F   IPS DMI++KSVC  WG SIS
Sbjct: 66  DVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]

BLAST of Cla97C06G120970 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 7.8e-16
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 4   SATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVL 63
           ++ KLP++ L+C+AI+A  V  R         +   TKD +   C  F  +ATKC+IDV+
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTR----TTTTLDQFSTKDVASVNCTVFTFEATKCMIDVM 62

Query: 64  KNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVKSVCALWG 108
           KN + PHPSCC AI KL +C+ +  KD+PS D  L+K +C LWG
Sbjct: 63  KNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of Cla97C06G120970 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 2   ATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVT----KDFSLFPCISFVPQATK 61
           + S  +L +V L+C+ I+A SVTAR     A AP+P++      D S   C  F+ +AT 
Sbjct: 8   SASTIRLAIVFLVCIVILAPSVTAR---TMAEAPSPVLVLFDEDDSSFSNCAPFILEATM 67

Query: 62  CVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVKSVCAL 106
           CV+DV+K  VA HPSCC+AIS L +C+ +  + IP  DM ++K +C L
Sbjct: 68  CVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]

BLAST of Cla97C06G120970 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   MATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVI 60
           + T   KL LV + C AI A    A    +    P P  T+D S FPC SFVP+ATKC+I
Sbjct: 6   LKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMI 65

Query: 61  DVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVKSVCALWGVSIS 112
           DV K+ +A HP+CC+AISKL +CSS F   IPS DMI++KSVC  WG SIS
Sbjct: 66  DVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]

BLAST of Cla97C06G120970 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.1e-16
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 4   SATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVL 63
           ++ KLP++ L+C+AI+A  V  R         +   TKD +   C  F  +ATKC+IDV+
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTR----TTTTLDQFSTKDVASVNCTVFTFEATKCMIDVM 62

Query: 64  KNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVKSVCALWG 108
           KN + PHPSCC AI KL +C+ +  KD+PS D  L+K +C LWG
Sbjct: 63  KNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of Cla97C06G120970 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 2   ATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVT----KDFSLFPCISFVPQATK 61
           + S  +L +V L+C+ I+A SVTAR     A AP+P++      D S   C  F+ +AT 
Sbjct: 8   SASTIRLAIVFLVCIVILAPSVTAR---TMAEAPSPVLVLFDEDDSSFSNCAPFILEATM 67

Query: 62  CVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVKSVCAL 106
           CV+DV+K  VA HPSCC+AIS L +C+ +  + IP  DM ++K +C L
Sbjct: 68  CVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

The following BLAST results are available for this feature:

BLAST of Cla97C06G120970 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65096.1	1.7e-23	53.15	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]
KGN65195.1	7.8e-16	44.23	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]
KGN65190.1	2.0e-11	42.59	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]

BLAST of Cla97C06G120970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYQ3\|A0A0A0LYQ3_CUCSA	1.1e-23	53.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1	[more]
tr\|A0A0A0LTE1\|A0A0A0LTE1_CUCSA	5.1e-16	44.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1	[more]
tr\|A0A0A0LTD6\|A0A0A0LTD6_CUCSA	1.3e-11	42.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]

BLAST of Cla97C06G120970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G120970 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G120970.1	Cla97C06G120970.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G120970	Cla012181	Watermelon (97103) v1	wmwmbB406
Cla97C06G120970	Csa1G212820	Cucumber (Chinese Long) v2	cuwmbB081
Cla97C06G120970	MELO3C010284	Melon (DHL92) v3.5.1	mewmbB265
Cla97C06G120970	ClCG06G011830	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G120970	CSPI01G16440	Wild cucumber (PI 183967)	cpiwmbB082
Cla97C06G120970	CSPI01G17020	Wild cucumber (PI 183967)	cpiwmbB068
Cla97C06G120970	CmoCh10G005450	Cucurbita moschata (Rifu)	cmowmbB070
Cla97C06G120970	Lsi06G010720	Bottle gourd (USVL1VR-Ls)	lsiwmbB379
Cla97C06G120970	Lsi06G010240	Bottle gourd (USVL1VR-Ls)	lsiwmbB375
Cla97C06G120970	MELO3C029641.2	Melon (DHL92) v3.6.1	medwmbB251
Cla97C06G120970	CsaV3_1G028080	Cucumber (Chinese Long) v3	cucwmbB063
Cla97C06G120970	Bhi02G000748	Wax gourd	wgowmbB655

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G120970	Watermelon (97103) v2	wmbwmbB138
Cla97C06G120970	Silver-seed gourd	carwmbB0133
Cla97C06G120970	Silver-seed gourd	carwmbB0600
Cla97C06G120970	Silver-seed gourd	carwmbB0662
Cla97C06G120970	Cucumber (Gy14) v2	cgybwmbB063
Cla97C06G120970	Cucumber (Gy14) v1	cgywmbB597
Cla97C06G120970	Cucurbita maxima (Rimu)	cmawmbB033
Cla97C06G120970	Cucurbita maxima (Rimu)	cmawmbB081
Cla97C06G120970	Cucurbita maxima (Rimu)	cmawmbB139
Cla97C06G120970	Cucurbita maxima (Rimu)	cmawmbB489
Cla97C06G120970	Cucurbita moschata (Rifu)	cmowmbB021
Cla97C06G120970	Cucurbita moschata (Rifu)	cmowmbB123
Cla97C06G120970	Cucumber (Chinese Long) v2	cuwmbB066
Cla97C06G120970	Bottle gourd (USVL1VR-Ls)	lsiwmbB295
Cla97C06G120970	Watermelon (Charleston Gray)	wcgwmbB239
Cla97C06G120970	Watermelon (97103) v1	wmwmbB218