Lsi06G010720 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G010720
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 20948406 .. 20948729 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTCAAGTCACCCAACGCATCCACAATGAAGTTAGCACGAGTAATTCTTGTTTGCGTAGCCATTTTAGCACCATCGGCGACAGCACGCACAGTAGCGGTAACGTCCGGTCCAACAGTACAACAAAATCTCTTTTTCTTAAGTTGTGCTCCATTTATTTTGGATGCAGCATTGTGTATGGTCGATGTGATTAAATTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCGGTGATTGTGCTCCTGCAATATTCGAAAAGATTCCTCCTGCTGACATGGATATAATTAAGAAGATTTGTGCTTTGTAA

mRNA sequence

ATGGCAGTCAAGTCACCCAACGCATCCACAATGAAGTTAGCACGAGTAATTCTTGTTTGCGTAGCCATTTTAGCACCATCGGCGACAGCACGCACAGTAGCGGTAACGTCCGGTCCAACAGTACAACAAAATCTCTTTTTCTTAAGTTGTGCTCCATTTATTTTGGATGCAGCATTGTGTATGGTCGATGTGATTAAATTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCGGTGATTGTGCTCCTGCAATATTCGAAAAGATTCCTCCTGCTGACATGGATATAATTAAGAAGATTTGTGCTTTGTAA

Coding sequence (CDS)

ATGGCAGTCAAGTCACCCAACGCATCCACAATGAAGTTAGCACGAGTAATTCTTGTTTGCGTAGCCATTTTAGCACCATCGGCGACAGCACGCACAGTAGCGGTAACGTCCGGTCCAACAGTACAACAAAATCTCTTTTTCTTAAGTTGTGCTCCATTTATTTTGGATGCAGCATTGTGTATGGTCGATGTGATTAAATTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCGGTGATTGTGCTCCTGCAATATTCGAAAAGATTCCTCCTGCTGACATGGATATAATTAAGAAGATTTGTGCTTTGTAA

Protein sequence

MAVKSPNASTMKLARVILVCVAILAPSATARTVAVTSGPTVQQNLFFLSCAPFILDAALCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL
Homology
[Close]
BLAST of Lsi06G010720 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 1 

Query: 2   AVKSPNASTMKLARVILVCVAILAPSATARTVAVTSGPTV----QQNLFFLSCAPFILDA 61
           A KS +AST++LA V LVC+ ILAPS TART+A    P +    + +  F +CAPFIL+A
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEA 62

Query: 62  ALCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
            +C+VDVIK P+A HP CCKAI  L DCAP I++ IP  DMD+IKKIC L
Sbjct: 63  TMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]
BLAST of Lsi06G010720 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 1 

Query: 1   MAVKSPNASTMKLARVILVCVAILAPSATARTVAVTSG---PTVQQNLFFLSCAPFILDA 60
           MA KS    TMKL  V + C AI AP A A  VA+      P   +++ F  C  F+ +A
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  ALCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKIC 106
             CM+DV K PIA HP CCKAI KL  C+ + F  IP ADM +IK +C
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of Lsi06G010720 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 9   STMKLARVILVCVAILAPSATARTVAVTSGPTVQQNLFFLSCAPFILDAALCMVDVIKFP 68
           +++KL  + LVC+AILA     RT   T      +++  ++C  F  +A  CM+DV+K  
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTRTTT-TLDQFSTKDVASVNCTVFTFEATKCMIDVMKNS 62

Query: 69  IAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
           + PHP CC+AI KL DC P +++ +P  D  +IKKIC L
Sbjct: 63  MPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

[Close]
BLAST of Lsi06G010720 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-24
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 1 

Query: 2   AVKSPNASTMKLARVILVCVAILAPSATARTVAVTSGPTV----QQNLFFLSCAPFILDA 61
           A KS +AST++LA V LVC+ ILAPS TART+A    P +    + +  F +CAPFIL+A
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEA 62

Query: 62  ALCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
            +C+VDVIK P+A HP CCKAI  L DCAP I++ IP  DMD+IKKIC L
Sbjct: 63  TMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]
BLAST of Lsi06G010720 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 1 

Query: 1   MAVKSPNASTMKLARVILVCVAILAPSATARTVAVTSG---PTVQQNLFFLSCAPFILDA 60
           MA KS    TMKL  V + C AI AP A A  VA+      P   +++ F  C  F+ +A
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  ALCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKIC 106
             CM+DV K PIA HP CCKAI KL  C+ + F  IP ADM +IK +C
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of Lsi06G010720 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-12
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 9   STMKLARVILVCVAILAPSATARTVAVTSGPTVQQNLFFLSCAPFILDAALCMVDVIKFP 68
           +++KL  + LVC+AILA     RT   T      +++  ++C  F  +A  CM+DV+K  
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTRTTT-TLDQFSTKDVASVNCTVFTFEATKCMIDVMKNS 62

Query: 69  IAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
           + PHP CC+AI KL DC P +++ +P  D  +IKKIC L
Sbjct: 63  MPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

The following BLAST results are available for this feature:
BLAST of Lsi06G010720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G010720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTD6_CUCSA2.7e-2457.27Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1[more]
A0A0A0LYQ3_CUCSA1.0e-1546.30Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1[more]
A0A0A0LTE1_CUCSA1.8e-1240.40Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1[more]
BLAST of Lsi06G010720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G010720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210094|gb|KGN65190.1|3.8e-2457.27hypothetical protein Csa_1G263450 [Cucumis sativus][more]
gi|700210000|gb|KGN65096.1|1.5e-1546.30hypothetical protein Csa_1G212820 [Cucumis sativus][more]
gi|700210099|gb|KGN65195.1|2.6e-1240.40hypothetical protein Csa_1G263980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G010720.1Lsi06G010720.1mRNA