CsaV3_1G028130 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G028130
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 15229011 .. 15229319 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGAAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGGTGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGTAGTTTTCCAAACGATTCCTTCTGCGGACATGGATGTG

mRNA sequence

ATGGCAGTGAAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGGTGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGTAGTTTTCCAAACGATTCCTTCTGCGGACATGGATGTG

Coding sequence (CDS)

ATGGCAGTGAAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGGTGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGTAGTTTTCCAAACGATTCCTTCTGCGGACATGGATGTG

Protein sequence

MAVKSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV

Homology

[Close]

BLAST of CsaV3_1G028130 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-17
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MAVKSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDA 60
           MA KSLK   MKL LVFI   AI A  A A +  ++ T   P  ++D+SFF C  F+ +A
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV 104
           T C++DVFK PIA HP CCKAI KL  C+   F  IPSADM V
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIV 103

[Close]

BLAST of CsaV3_1G028130 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 58/104 (55.77%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 2   AVKSLKASPMKLALVFIVSIAILAASATAGRTVVS--STTLDPSISQDLSFFSCTPFILD 61
           A KS  AS ++LA+VF+V I ILA S TA RT+    S  L      D SF +C PFIL+
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTA-RTMAEAPSPVLVLFDEDDSSFSNCAPFILE 62

Query: 62  ATLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV 104
           AT+C+VDV K P+A HP CCKAI  LNDCAP ++Q IP  DMDV
Sbjct: 63  ATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDV 103

[Close]

BLAST of CsaV3_1G028130 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 6.3e-12
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 11  MKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKF 70
           +KL ++F+V IAILA       T    TTLD   ++D++  +CT F  +AT C++DV K 
Sbjct: 5   LKLPIIFLVCIAILALPVMTRTT----TTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 64

Query: 71  PIAPHPFCCKAIFKLNDCAPVVFQTIPSAD 101
            + PHP CC+AI KLNDC P V++ +PS D
Sbjct: 65  SMPPHPSCCRAILKLNDCNPEVYKDVPSTD 90

[Close]

BLAST of CsaV3_1G028130 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-17
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MAVKSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDA 60
           MA KSLK   MKL LVFI   AI A  A A +  ++ T   P  ++D+SFF C  F+ +A
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV 104
           T C++DVFK PIA HP CCKAI KL  C+   F  IPSADM V
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIV 103

[Close]

BLAST of CsaV3_1G028130 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.6e-17
Identity = 58/104 (55.77%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 2   AVKSLKASPMKLALVFIVSIAILAASATAGRTVVS--STTLDPSISQDLSFFSCTPFILD 61
           A KS  AS ++LA+VF+V I ILA S TA RT+    S  L      D SF +C PFIL+
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTA-RTMAEAPSPVLVLFDEDDSSFSNCAPFILE 62

Query: 62  ATLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV 104
           AT+C+VDV K P+A HP CCKAI  LNDCAP ++Q IP  DMDV
Sbjct: 63  ATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDV 103

[Close]

BLAST of CsaV3_1G028130 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 11  MKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKF 70
           +KL ++F+V IAILA       T    TTLD   ++D++  +CT F  +AT C++DV K 
Sbjct: 5   LKLPIIFLVCIAILALPVMTRTT----TTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 64

Query: 71  PIAPHPFCCKAIFKLNDCAPVVFQTIPSAD 101
            + PHP CC+AI KLNDC P V++ +PS D
Sbjct: 65  SMPPHPSCCRAILKLNDCNPEVYKDVPSTD 90

The following BLAST results are available for this feature:

BLAST of CsaV3_1G028130 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65096.1	6.5e-17	52.43	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]
KGN65190.1	1.5e-16	55.77	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]
KGN65195.1	6.3e-12	45.56	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]

BLAST of CsaV3_1G028130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYQ3\|A0A0A0LYQ3_CUCSA	4.3e-17	52.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1	[more]
tr\|A0A0A0LTD6\|A0A0A0LTD6_CUCSA	9.6e-17	55.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]
tr\|A0A0A0LTE1\|A0A0A0LTE1_CUCSA	4.2e-12	45.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G028130.1	CsaV3_1G028130.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G028130	MELO3C010285	Melon (DHL92) v3.5.1	cucmeB054
CsaV3_1G028130	ClCG06G011840	Watermelon (Charleston Gray)	cucwcgB074
CsaV3_1G028130	Lsi06G010250	Bottle gourd (USVL1VR-Ls)	cuclsiB073
CsaV3_1G028130	Lsi06G010720	Bottle gourd (USVL1VR-Ls)	cuclsiB084
CsaV3_1G028130	MELO3C029641.2	Melon (DHL92) v3.6.1	cucmedB052

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G028130	Silver-seed gourd	carcucB0142
CsaV3_1G028130	Silver-seed gourd	carcucB0609
CsaV3_1G028130	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G028130	Cucurbita maxima (Rimu)	cmacucB0067
CsaV3_1G028130	Cucurbita maxima (Rimu)	cmacucB0111
CsaV3_1G028130	Cucurbita moschata (Rifu)	cmocucB0054
CsaV3_1G028130	Cucurbita moschata (Rifu)	cmocucB0100
CsaV3_1G028130	Cucurbita pepo (Zucchini)	cpecucB0429
CsaV3_1G028130	Cucurbita pepo (Zucchini)	cpecucB0796
CsaV3_1G028130	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G028130	Watermelon (97103) v1	cucwmB091
CsaV3_1G028130	Watermelon (97103) v2	cucwmbB063
CsaV3_1G028130	Wax gourd	cucwgoB104