MELO3C025388.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025388.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	DUF3511 domain protein
Location	chr06 : 31407599 .. 31407922 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGCTCCACCACCACCAAAATAAAGGTGGTCGGAGCCTGGAAGTCATGGACGTGAGAAAATTGAGTGAAAACAAGATGTACCTAAATCAGTCACAGAGGCGAACTGTCGTTGACCCTTCGTTTGTGAAACGATATGTGACGAAAACATGGGAGCCGTCGAAAATGAAGAAGTCGTGGTGGAAGAAACCAGAAATGAAGAGACGACAACGTGTTGCTAAGTACAAATTGTATGCAGTTGAAGGGAAGGTAAAGAGTTCAATAAAGAAAGGGTTCAGGTGGATCAAAACCAAGTGTAGCAGAATTATATCTGGGTTTTGA

mRNA sequence

ATGGAAGGGCTCCACCACCACCAAAATAAAGGTGGTCGGAGCCTGGAAGTCATGGACGTGAGAAAATTGAGTGAAAACAAGATGTACCTAAATCAGTCACAGAGGCGAACTGTCGTTGACCCTTCGTTTGTGAAACGATATGTGACGAAAACATGGGAGCCGTCGAAAATGAAGAAGTCGTGGTGGAAGAAACCAGAAATGAAGAGACGACAACGTGTTGCTAAGTACAAATTGTATGCAGTTGAAGGGAAGGTAAAGAGTTCAATAAAGAAAGGGTTCAGGTGGATCAAAACCAAGTGTAGCAGAATTATATCTGGGTTTTGA

Coding sequence (CDS)

ATGGAAGGGCTCCACCACCACCAAAATAAAGGTGGTCGGAGCCTGGAAGTCATGGACGTGAGAAAATTGAGTGAAAACAAGATGTACCTAAATCAGTCACAGAGGCGAACTGTCGTTGACCCTTCGTTTGTGAAACGATATGTGACGAAAACATGGGAGCCGTCGAAAATGAAGAAGTCGTGGTGGAAGAAACCAGAAATGAAGAGACGACAACGTGTTGCTAAGTACAAATTGTATGCAGTTGAAGGGAAGGTAAAGAGTTCAATAAAGAAAGGGTTCAGGTGGATCAAAACCAAGTGTAGCAGAATTATATCTGGGTTTTGA

Protein sequence

MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSKMKKSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF

Homology

[Close]

BLAST of MELO3C025388.2 vs. NCBI nr
Match: KGN56136.1 (hypothetical protein Csa_3G077700 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 2.2e-44
Identity = 96/109 (88.07%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSK--MK 60
           MEGLHHH NKGGRSLEV+DVRKLS NK+YLNQSQRRTVVDPSFVK+YVTKT EPSK  MK
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 61  KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 108
           K WWKKPEM+RRQRVAKYKLY VEGKVK SIKKG RWIKTKCSRIISGF
Sbjct: 61  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of MELO3C025388.2 vs. NCBI nr
Match: XP_022151002.1 (uncharacterized protein LOC111019023 [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 1.7e-28
Identity = 71/110 (64.55%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVD--PSFVKRYVTKTWEPSKMK 60
           MEG+H    KGGRSLE++DVR LSENK+ L+QS+ R  VD  PS  ++ + K  E SK  
Sbjct: 1   MEGIHRRPKKGGRSLEIIDVRNLSENKLSLSQSRSRAAVDPSPSTKRQAIKKPSESSKSS 60

Query: 61  -KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 108
            KSWWK PEMKRR+RVAKYKLY VEGKVK+SIKKG +W KT+CSRI+SGF
Sbjct: 61  VKSWWKNPEMKRRRRVAKYKLYTVEGKVKNSIKKGIKWFKTRCSRIMSGF 110

[Close]

BLAST of MELO3C025388.2 vs. NCBI nr
Match: KGN61447.1 (hypothetical protein Csa_2G123580 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 2.2e-23
Identity = 67/110 (60.91%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKT-WEPSKMK- 60
           MEG+H   NKG R+L ++DVRKLSENK++LNQS R++ ++PS VK    KT  E SK   
Sbjct: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98

Query: 61  -KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 108
            KSW KK E+KRR+RVAKYKLY VEGKVK SI+KG  W K K +RI+SGF
Sbjct: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of MELO3C025388.2 vs. NCBI nr
Match: ONI04311.1 (hypothetical protein PRUPE_6G315400 [Prunus persica])

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 50/110 (45.45%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 11  GGRSLEVMDVRKLSENK-MYLNQSQRRTVVDPSFVKRYVTKTWE---------------P 70
           G R+L++++VR+LSEN+ MY+ +S     +DPS+   Y  KT +                
Sbjct: 13  GCRNLDMVNVRRLSENRTMYMGRSH----LDPSWAP-YPMKTRQRDIQLRIGGKKPKERS 72

Query: 71  SKMKKSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRII 105
           SK  K WW  PE KRR RVA+YKLY  EGKVK S+KKG+RW K KC  I+
Sbjct: 73  SKPSKLWWNDPEFKRRGRVARYKLYGAEGKVKRSLKKGYRWFKRKCLEIV 117

[Close]

BLAST of MELO3C025388.2 vs. NCBI nr
Match: PON89516.1 (hypothetical protein TorRG33x02_146600 [Trema orientalis])

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-12
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 2   EGLHHHQNKGGRSLEVMDVRKLSEN-KMYLNQSQ-RRTVVDPSFVKRYVTKTWEPSKMK- 61
           E + H  N  GRS+E ++ R LSEN ++Y+  S    T   PS  K+ V K  + +    
Sbjct: 3   EIIRHRSNGLGRSIETVNARTLSENRRIYVGWSNYPLTSSGPSPSKKRVLKAPKSATQSL 62

Query: 62  KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIIS 106
           K WW  PEMKR++R++KYKLY+ E  VK S KKG RW++ KCS IIS
Sbjct: 63  KWWWNDPEMKRQRRISKYKLYSAEANVKRSFKKGLRWLRKKCSMIIS 109

[Close]

BLAST of MELO3C025388.2 vs. TAIR10
Match: AT3G05725.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-12
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 55  SKMKKSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISG 107
           S + K WW  PE+KR++RVAKYKLY+ EGK+K +++K ++WIK +CS+II G
Sbjct: 72  STLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of MELO3C025388.2 vs. TAIR10
Match: AT2G47480.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 66  EMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 108
           EMKR++R+A+YK Y VEGKVKS++K GFRWIK KC +I+  F
Sbjct: 69  EMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of MELO3C025388.2 vs. TAIR10
Match: AT3G62640.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 66  EMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISG 107
           E KR++R+A YK YA+EGKVKS++KKGF WIK + S II G
Sbjct: 70  ETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of MELO3C025388.2 vs. TAIR10
Match: AT5G11970.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-07
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 47  YVTKTWEPSKMKKSWW-KKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIIS 106
           Y  K  +     KSW    PE++R++RVA YK+Y VEGKVK S +  FRW+K + ++++ 
Sbjct: 43  YDVKKEKSIARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVY 102

Query: 107 GF 108
           G+
Sbjct: 103 GW 104

[Close]

BLAST of MELO3C025388.2 vs. TAIR10
Match: AT2G19460.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 50.8 bits (120), Expect = 5.9e-07
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 55  SKMKKSW-WKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIIS 106
           S    SW +  P+++R++RV  Y+ Y VEGK+K S +K F+WIK KC+++++
Sbjct: 65  SSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

[Close]

BLAST of MELO3C025388.2 vs. TrEMBL
Match: tr|A0A0A0L7N5|A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-44
Identity = 96/109 (88.07%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSK--MK 60
           MEGLHHH NKGGRSLEV+DVRKLS NK+YLNQSQRRTVVDPSFVK+YVTKT EPSK  MK
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 61  KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 108
           K WWKKPEM+RRQRVAKYKLY VEGKVK SIKKG RWIKTKCSRIISGF
Sbjct: 61  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of MELO3C025388.2 vs. TrEMBL
Match: tr|A0A0A0LL30|A0A0A0LL30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123580 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 67/110 (60.91%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKT-WEPSKMK- 60
           MEG+H   NKG R+L ++DVRKLSENK++LNQS R++ ++PS VK    KT  E SK   
Sbjct: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98

Query: 61  -KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 108
            KSW KK E+KRR+RVAKYKLY VEGKVK SI+KG  W K K +RI+SGF
Sbjct: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of MELO3C025388.2 vs. TrEMBL
Match: tr|A0A2N9IXI1|A0A2N9IXI1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56731 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 11  GGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFV---KRYVTKTWEPSKMK-KSWWKKPE 70
           GGR LE++ VR LSENK+Y+   + R   DPS     K   + T +PS +  K WW  PE
Sbjct: 12  GGRDLEIVTVRNLSENKLYVG-GRSRPSFDPSLYHMSKSRTSSTTKPSPLAVKKWWNDPE 71

Query: 71  MKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRI 104
            KR++RVAKYKLY  EGK+KSSIKKG+ W+K  C R+
Sbjct: 72  RKRKRRVAKYKLYGTEGKLKSSIKKGYHWVKKTCIRM 107

[Close]

BLAST of MELO3C025388.2 vs. TrEMBL
Match: tr|M5W2H8|M5W2H8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G315400 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 50/110 (45.45%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 11  GGRSLEVMDVRKLSENK-MYLNQSQRRTVVDPSFVKRYVTKTWE---------------P 70
           G R+L++++VR+LSEN+ MY+ +S     +DPS+   Y  KT +                
Sbjct: 13  GCRNLDMVNVRRLSENRTMYMGRSH----LDPSWAP-YPMKTRQRDIQLRIGGKKPKERS 72

Query: 71  SKMKKSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRII 105
           SK  K WW  PE KRR RVA+YKLY  EGKVK S+KKG+RW K KC  I+
Sbjct: 73  SKPSKLWWNDPEFKRRGRVARYKLYGAEGKVKRSLKKGYRWFKRKCLEIV 117

[Close]

BLAST of MELO3C025388.2 vs. TrEMBL
Match: tr|A0A2P5EVE2|A0A2P5EVE2_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_146600 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.3e-12
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 2   EGLHHHQNKGGRSLEVMDVRKLSEN-KMYLNQSQ-RRTVVDPSFVKRYVTKTWEPSKMK- 61
           E + H  N  GRS+E ++ R LSEN ++Y+  S    T   PS  K+ V K  + +    
Sbjct: 3   EIIRHRSNGLGRSIETVNARTLSENRRIYVGWSNYPLTSSGPSPSKKRVLKAPKSATQSL 62

Query: 62  KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIIS 106
           K WW  PEMKR++R++KYKLY+ E  VK S KKG RW++ KCS IIS
Sbjct: 63  KWWWNDPEMKRQRRISKYKLYSAEANVKRSFKKGLRWLRKKCSMIIS 109

The following BLAST results are available for this feature:

BLAST of MELO3C025388.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56136.1	2.2e-44	88.07	hypothetical protein Csa_3G077700 [Cucumis sativus]	[more]
XP_022151002.1	1.7e-28	64.55	uncharacterized protein LOC111019023 [Momordica charantia]	[more]
KGN61447.1	2.2e-23	60.91	hypothetical protein Csa_2G123580 [Cucumis sativus]	[more]
ONI04311.1	1.7e-12	45.45	hypothetical protein PRUPE_6G315400 [Prunus persica]	[more]
PON89516.1	6.6e-12	45.79	hypothetical protein TorRG33x02_146600 [Trema orientalis]	[more]

BLAST of MELO3C025388.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05725.1	2.7e-12	55.77	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	2.0e-10	64.29	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	1.1e-08	63.41	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	2.7e-07	41.94	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	5.9e-07	42.31	Protein of unknown function (DUF3511)	[more]

BLAST of MELO3C025388.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C025388.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7N5\|A0A0A0L7N5_CUCSA	1.5e-44	88.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077700 PE=4 SV=1	[more]
tr\|A0A0A0LL30\|A0A0A0LL30_CUCSA	1.4e-23	60.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123580 PE=4 SV=1	[more]
tr\|A0A2N9IXI1\|A0A2N9IXI1_FAGSY	1.1e-15	51.55	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56731 PE=4 SV=1	[more]
tr\|M5W2H8\|M5W2H8_PRUPE	1.1e-12	45.45	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G315400 PE=4 SV=1	[more]
tr\|A0A2P5EVE2\|A0A2P5EVE2_9ROSA	4.3e-12	45.79	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_146600 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025388.2.1	MELO3C025388.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 62..106 e-value: 5.2E-24 score: 83.7
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 14..106
None	No IPR available	PANTHER	PTHR33193:SF3	SUBFAMILY NOT NAMED	coord: 14..106

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025388.2	Csa3G077700	Cucumber (Chinese Long) v2	cumedB227
MELO3C025388.2	CSPI03G05200	Wild cucumber (PI 183967)	cpimedB228
MELO3C025388.2	Cucsa.059870	Cucumber (Gy14) v1	cgymedB047
MELO3C025388.2	CmaCh04G009490	Cucurbita maxima (Rimu)	cmamedB775
MELO3C025388.2	CmoCh04G010200	Cucurbita moschata (Rifu)	cmomedB772
MELO3C025388.2	Lsi05G006060	Bottle gourd (USVL1VR-Ls)	lsimedB388
MELO3C025388.2	Cp4.1LG01g08090	Cucurbita pepo (Zucchini)	cpemedB480
MELO3C025388.2	CsGy3G005270	Cucumber (Gy14) v2	cgybmedB205
MELO3C025388.2	Cla005302	Watermelon (97103) v1	medwmB434
MELO3C025388.2	ClCG10G005480	Watermelon (Charleston Gray)	medwcgB403
MELO3C025388.2	Cla97C10G189710	Watermelon (97103) v2	medwmbB417
MELO3C025388.2	Bhi11G000490	Wax gourd	medwgoB499
MELO3C025388.2	Carg00062	Silver-seed gourd	carmedB0682
MELO3C025388.2	CsaV3_3G005210	Cucumber (Chinese Long) v3	cucmedB234

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025388.2	Cucurbita maxima (Rimu)	cmamedB348
MELO3C025388.2	Cucurbita maxima (Rimu)	cmamedB780
MELO3C025388.2	Cucurbita moschata (Rifu)	cmomedB322
MELO3C025388.2	Cucurbita moschata (Rifu)	cmomedB776
MELO3C025388.2	Cucurbita pepo (Zucchini)	cpemedB013
MELO3C025388.2	Cucurbita pepo (Zucchini)	cpemedB484
MELO3C025388.2	Silver-seed gourd	carmedB0684