Cp4.1LG01g08090 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g08090
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionProtein of unknown function (DUF3511)
LocationCp4.1LG01 : 5085591 .. 5085929 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACCCGGGAAGGCATTCACCACCATCCACACAACAGTACTGACTGGAGCCTTGAACCCATGGACGAAAATAAACTAAGCGATAATAATATGTACTTAAACCAGCCACAAAAGCGAGTTATCATCAACTCATCATTTGTGAAACGACATATCATCAAGACATCGGAGTCGTCAAAACGTTCGACCAGGTCGTGGTGGAAGAACCCGAAAATAAAGAGACGGCGGCGTGTCGCCAAGTACAGATTCTATACTGTTGAAGGGAAGGTAAAGAGTTCCATAAAGAAAGGAATCAAATGGTTGAAAACCAAGTGTAGCAGAATCATATTTGGGTTTTGA

mRNA sequence

ATGACGACCCGGGAAGGCATTCACCACCATCCACACAACAGTACTGACTGGAGCCTTGAACCCATGGACGAAAATAAACTAAGCGATAATAATATGTACTTAAACCAGCCACAAAAGCGAGTTATCATCAACTCATCATTTGTGAAACGACATATCATCAAGACATCGGAGTCGTCAAAACGTTCGACCAGGTCGTGGTGGAAGAACCCGAAAATAAAGAGACGGCGGCGTGTCGCCAAGTACAGATTCTATACTGTTGAAGGGAAGGTAAAGAGTTCCATAAAGAAAGGAATCAAATGGTTGAAAACCAAGTGTAGCAGAATCATATTTGGGTTTTGA

Coding sequence (CDS)

ATGACGACCCGGGAAGGCATTCACCACCATCCACACAACAGTACTGACTGGAGCCTTGAACCCATGGACGAAAATAAACTAAGCGATAATAATATGTACTTAAACCAGCCACAAAAGCGAGTTATCATCAACTCATCATTTGTGAAACGACATATCATCAAGACATCGGAGTCGTCAAAACGTTCGACCAGGTCGTGGTGGAAGAACCCGAAAATAAAGAGACGGCGGCGTGTCGCCAAGTACAGATTCTATACTGTTGAAGGGAAGGTAAAGAGTTCCATAAAGAAAGGAATCAAATGGTTGAAAACCAAGTGTAGCAGAATCATATTTGGGTTTTGA

Protein sequence

MTTREGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIINSSFVKRHIIKTSESSKRSTRSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF
Homology
[Close]
BLAST of Cp4.1LG01g08090 vs. TrEMBL
Match: A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-27
Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 1 

Query: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIINSSFVKRHIIKTSESSKRSTR 64
           EG+HHHP N    SLE +D  KLS N +YLNQ Q+R +++ SFVK+++ KTSE SK   +
Sbjct: 2   EGLHHHP-NKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 61

Query: 65  S-WWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
             WWK P+++RR+RVAKY+ Y VEGKVK SIKKGI+W+KTKCSRII GF
Sbjct: 62  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]
BLAST of Cp4.1LG01g08090 vs. TrEMBL
Match: A0A0A0LL30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 59/110 (53.64%), Postives = 76/110 (69.09%), Query Frame = 1 

Query: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIINSSFVKRHIIKT-SESSKRST 64
           EG+H  P N  D +L  +D  KLS+N ++LNQ  ++  +N S VK   +KT SESSK S 
Sbjct: 40  EGVHRRP-NKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 99

Query: 65  -RSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
            +SW K  ++KRRRRVAKY+ YTVEGKVK SI+KGI W K K +RI+ GF
Sbjct: 100 GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]
BLAST of Cp4.1LG01g08090 vs. TrEMBL
Match: R0I4X9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10016388mg PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1 

Query: 54  KTSESSKRSTRSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFG 112
           K S S   S + WW +P+IKR+RRVAKY+ Y+ EGK+K+S++K  KW+K +CS+II G
Sbjct: 67  KRSSSHSTSLKGWWNDPEIKRKRRVAKYKLYSAEGKMKTSLRKSYKWIKIQCSKIIHG 124

[Close]
BLAST of Cp4.1LG01g08090 vs. TrEMBL
Match: B9RFH1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434550 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 65  SWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
           SWW  P+ KR++RVA+Y+FY VEGKVK SIKKG +W K  CSRI+ GF
Sbjct: 48  SWWNAPETKRKKRVAQYKFYAVEGKVKISIKKGFRWFKKTCSRIVHGF 95

[Close]
BLAST of Cp4.1LG01g08090 vs. TrEMBL
Match: A0A078G1D4_BRANA (BnaAnng02720D protein OS=Brassica napus GN=BnaAnng02720D PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 58  SSKRSTRSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFG 112
           S  ++ + WW +P+IKR+RRVAKY+ Y+ EGKVK S+KK  KW+K +C++II G
Sbjct: 70  SHSKTLKGWWNDPEIKRKRRVAKYKLYSAEGKVKKSLKKSYKWIKIQCAKIIHG 123

[Close]
BLAST of Cp4.1LG01g08090 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 67.4 bits (163), Expect = 6.4e-12
Identity = 30/61 (49.18%), Postives = 45/61 (73.77%), Query Frame = 1 

Query: 53  IKTSESSKRST--RSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIF 112
           ++   SS  ST  + WW +P+IKR+RRVAKY+ Y+ EGK+K +++K  KW+K +CS+II 
Sbjct: 63  VRPRRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIH 122

[Close]
BLAST of Cp4.1LG01g08090 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-08
Identity = 22/42 (52.38%), Postives = 35/42 (83.33%), Query Frame = 1 

Query: 71  KIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
           ++KR++R+A+Y+ YTVEGKVKS++K G +W+K KC +I+  F
Sbjct: 69  EMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]
BLAST of Cp4.1LG01g08090 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 23/49 (46.94%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 62  STRSW-WKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRII 110
           S+ SW + +P ++R++RV  YR YTVEGK+K S +K  KW+K KC++++
Sbjct: 67  SSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

[Close]
BLAST of Cp4.1LG01g08090 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 52.0 bits (123), Expect = 2.8e-07
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 56  SESSKRSTRSWWK--NPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFG 112
           S S  R+T + W+  + + KR++R+A Y+ Y +EGKVKS++KKG  W+K + S II G
Sbjct: 53  STSKTRTTATPWRLIDAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]
BLAST of Cp4.1LG01g08090 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 24/61 (39.34%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 53  IKTSESSKRSTRSWW-KNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFG 112
           +K  +S  RS +SW   +P+++R++RVA Y+ Y VEGKVK S +   +WLK + +++++G
Sbjct: 45  VKKEKSIARS-KSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYG 104

[Close]
BLAST of Cp4.1LG01g08090 vs. NCBI nr
Match: gi|659126920|ref|XP_008463430.1| (PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 9.3e-29
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 1 

Query: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIINSSFVKRHIIKTSESSKRSTR 64
           EG+HHH  N    SLE MD  KLS+N MYLNQ Q+R +++ SFVKR++ KT E SK   +
Sbjct: 2   EGLHHH-QNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSKMK-K 61

Query: 65  SWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
           SWWK P++KRR+RVAKY+ Y VEGKVKSSIKKG +W+KTKCSRII GF
Sbjct: 62  SWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 107

[Close]
BLAST of Cp4.1LG01g08090 vs. NCBI nr
Match: gi|700201003|gb|KGN56136.1| (hypothetical protein Csa_3G077700 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 3.9e-27
Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 1 

Query: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIINSSFVKRHIIKTSESSKRSTR 64
           EG+HHHP N    SLE +D  KLS N +YLNQ Q+R +++ SFVK+++ KTSE SK   +
Sbjct: 2   EGLHHHP-NKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 61

Query: 65  S-WWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
             WWK P+++RR+RVAKY+ Y VEGKVK SIKKGI+W+KTKCSRII GF
Sbjct: 62  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]
BLAST of Cp4.1LG01g08090 vs. NCBI nr
Match: gi|659082109|ref|XP_008441676.1| (PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-21
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 1 

Query: 3   TREGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIINSSFVKRHIIKT-SESSKR 62
           T E +H  P N  D +L+ +D  KLS+N M+LNQ ++   I+ S +K   IKT SESSK 
Sbjct: 2   TMERVHRRP-NKGDRNLKIIDVRKLSENKMHLNQSRRHSTIDPSSMKPRAIKTTSESSKA 61

Query: 63  ST-RSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
           ST + WWKN ++KRRRRVAKY+ YTVEG+VK SI+KGI W K +C+RII GF
Sbjct: 62  STVKLWWKNSEMKRRRRVAKYKLYTVEGRVKESIRKGINWFKCRCTRIISGF 112

[Close]
BLAST of Cp4.1LG01g08090 vs. NCBI nr
Match: gi|700206328|gb|KGN61447.1| (hypothetical protein Csa_2G123580 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-17
Identity = 59/110 (53.64%), Postives = 76/110 (69.09%), Query Frame = 1 

Query: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIINSSFVKRHIIKT-SESSKRST 64
           EG+H  P N  D +L  +D  KLS+N ++LNQ  ++  +N S VK   +KT SESSK S 
Sbjct: 40  EGVHRRP-NKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 99

Query: 65  -RSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
            +SW K  ++KRRRRVAKY+ YTVEGKVK SI+KGI W K K +RI+ GF
Sbjct: 100 GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]
BLAST of Cp4.1LG01g08090 vs. NCBI nr
Match: gi|731415821|ref|XP_010659680.1| (PREDICTED: uncharacterized protein LOC104881367 [Vitis vinifera])

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 62  STRSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
           S+++W  +P +KRR+RVAKY+ Y VEGKVKSS KKG++W+K KCSRII G+
Sbjct: 49  SSKAWLDDPDVKRRQRVAKYKLYAVEGKVKSSFKKGMRWIKRKCSRIIHGY 99

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g08090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g08090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7N5_CUCSA2.7e-2760.55Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1[more]
A0A0A0LL30_CUCSA1.5e-1753.64Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1[more]
R0I4X9_9BRAS5.1e-1053.45Uncharacterized protein OS=Capsella rubella GN=CARUB_v10016388mg PE=4 SV=1[more]
B9RFH1_RICCO5.1e-1064.58Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434550 PE=4 SV=1[more]
A0A078G1D4_BRANA2.0e-0953.70BnaAnng02720D protein OS=Brassica napus GN=BnaAnng02720D PE=4 SV=1[more]
BLAST of Cp4.1LG01g08090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05725.16.4e-1249.18 Protein of unknown function (DUF3511)[more]
AT2G47480.12.5e-0852.38 Protein of unknown function (DUF3511)[more]
AT2G19460.11.3e-0746.94 Protein of unknown function (DUF3511)[more]
AT3G62640.12.8e-0744.83 Protein of unknown function (DUF3511)[more]
AT5G11970.11.4e-0639.34 Protein of unknown function (DUF3511)[more]
BLAST of Cp4.1LG01g08090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126920|ref|XP_008463430.1|9.3e-2963.89PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo][more]
gi|700201003|gb|KGN56136.1|3.9e-2760.55hypothetical protein Csa_3G077700 [Cucumis sativus][more]
gi|659082109|ref|XP_008441676.1|4.2e-2155.36PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo][more]
gi|700206328|gb|KGN61447.1|2.1e-1753.64hypothetical protein Csa_2G123580 [Cucumis sativus][more]
gi|731415821|ref|XP_010659680.1|3.3e-1062.75PREDICTED: uncharacterized protein LOC104881367 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g08090.1Cp4.1LG01g08090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 67..110
score: 2.2
NoneNo IPR availablePANTHERPTHR33193FAMILY NOT NAMEDcoord: 56..112
score: 2.6
NoneNo IPR availablePANTHERPTHR33193:SF3SUBFAMILY NOT NAMEDcoord: 56..112
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g08090Cucsa.059870Cucumber (Gy14) v1cgycpeB0078
Cp4.1LG01g08090CmaCh04G009490Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g08090CmoCh04G010200Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g08090Cla005302Watermelon (97103) v1cpewmB385
Cp4.1LG01g08090Csa3G077700Cucumber (Chinese Long) v2cpecuB392
Cp4.1LG01g08090MELO3C025388Melon (DHL92) v3.5.1cpemeB410
Cp4.1LG01g08090ClCG10G005480Watermelon (Charleston Gray)cpewcgB347
Cp4.1LG01g08090CSPI03G05200Wild cucumber (PI 183967)cpecpiB391
Cp4.1LG01g08090Lsi05G006060Bottle gourd (USVL1VR-Ls)cpelsiB368
Cp4.1LG01g08090MELO3C025388.2Melon (DHL92) v3.6.1cpemedB480
Cp4.1LG01g08090CsaV3_3G005210Cucumber (Chinese Long) v3cpecucB0488
Cp4.1LG01g08090Bhi11G000490Wax gourdcpewgoB0480
Cp4.1LG01g08090CsGy3G005270Cucumber (Gy14) v2cgybcpeB365
Cp4.1LG01g08090Carg00062Silver-seed gourdcarcpeB0938
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g08090Cucurbita pepo (Zucchini)cpecpeB007
Cp4.1LG01g08090Cucumber (Gy14) v1cgycpeB0077
Cp4.1LG01g08090Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g08090Cucurbita moschata (Rifu)cmocpeB312
Cp4.1LG01g08090Cucurbita moschata (Rifu)cmocpeB317
Cp4.1LG01g08090Wild cucumber (PI 183967)cpecpiB392
Cp4.1LG01g08090Cucumber (Chinese Long) v2cpecuB393
Cp4.1LG01g08090Bottle gourd (USVL1VR-Ls)cpelsiB370
Cp4.1LG01g08090Watermelon (Charleston Gray)cpewcgB349
Cp4.1LG01g08090Watermelon (97103) v1cpewmB386
Cp4.1LG01g08090Melon (DHL92) v3.5.1cpemeB409
Cp4.1LG01g08090Melon (DHL92) v3.5.1cpemeB413
Cp4.1LG01g08090Cucumber (Gy14) v2cgybcpeB369
Cp4.1LG01g08090Melon (DHL92) v3.6.1cpemedB484
Cp4.1LG01g08090Silver-seed gourdcarcpeB1110
Cp4.1LG01g08090Cucumber (Chinese Long) v3cpecucB0491
Cp4.1LG01g08090Wax gourdcpewgoB0484