Lsi05G006060 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G006060
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDUF3511 domain protein
Locationchr05 : 7520848 .. 7521177 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGCTCCACCACCATCCAAACAAGGGTGGTCGGAGCCTGGAAGTCATAGACGTGAGAAAATTGAGTGAAAACAAGATGTACTTAAATCAGTCGCAAAAACGAGCTATTGTTGACCCATCATTTGTGAAACGACATGTGACCAAGACACCAGAATCGTCAAAAAATTCGACAAAGAAGTCGTGGTGGAAGAAACCAGAATTGAAGAGACGACGACGTGTTGCAAAGTACAAATTGTATGCAGTTGAAGGGAAGGTTAAGAATTCCATAAAGAAAGGGATCAGGTGGTTCAAAACCAAGTGTAGCAGAATTATATCTGGGTTTTGA

mRNA sequence

ATGGAAGGGCTCCACCACCATCCAAACAAGGGTGGTCGGAGCCTGGAAGTCATAGACGTGAGAAAATTGAGTGAAAACAAGATGTACTTAAATCAGTCGCAAAAACGAGCTATTGTTGACCCATCATTTGTGAAACGACATGTGACCAAGACACCAGAATCGTCAAAAAATTCGACAAAGAAGTCGTGGTGGAAGAAACCAGAATTGAAGAGACGACGACGTGTTGCAAAGTACAAATTGTATGCAGTTGAAGGGAAGGTTAAGAATTCCATAAAGAAAGGGATCAGGTGGTTCAAAACCAAGTGTAGCAGAATTATATCTGGGTTTTGA

Coding sequence (CDS)

ATGGAAGGGCTCCACCACCATCCAAACAAGGGTGGTCGGAGCCTGGAAGTCATAGACGTGAGAAAATTGAGTGAAAACAAGATGTACTTAAATCAGTCGCAAAAACGAGCTATTGTTGACCCATCATTTGTGAAACGACATGTGACCAAGACACCAGAATCGTCAAAAAATTCGACAAAGAAGTCGTGGTGGAAGAAACCAGAATTGAAGAGACGACGACGTGTTGCAAAGTACAAATTGTATGCAGTTGAAGGGAAGGTTAAGAATTCCATAAAGAAAGGGATCAGGTGGTTCAAAACCAAGTGTAGCAGAATTATATCTGGGTTTTGA

Protein sequence

MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNSTKKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF
BLAST of Lsi05G006060 vs. TrEMBL
Match: A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.1e-44
Identity = 90/109 (82.57%), Postives = 99/109 (90.83%), Query Frame = 1

Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNSTK 60
           MEGLHHHPNKGGRSLEVIDVRKLS NK+YLNQSQ+R +VDPSFVK++VTKT E SK+  K
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 61  KSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           K WWKKPE++RR+RVAKYKLY VEGKVK SIKKGIRW KTKCSRIISGF
Sbjct: 61  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

BLAST of Lsi05G006060 vs. TrEMBL
Match: A0A0A0LL30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-29
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1

Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTP-ESSKNST 60
           MEG+H  PNKG R+L +IDVRKLSENK++LNQS +++ ++PS VK    KT  ESSK S 
Sbjct: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98

Query: 61  KKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
            KSW KK E+KRRRRVAKYKLY VEGKVK+SI+KGI WFK K +RI+SGF
Sbjct: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

BLAST of Lsi05G006060 vs. TrEMBL
Match: A0A061F3Z2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026743 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-14
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 1

Query: 11  GGRSLEVIDVRKLSE-NKMYLNQSQKRAIVDPSFV--KRHVTKTPESSKNSTKKSWWKKP 70
           GGR+ E+ D   L   NK+Y  +S +   +DPS    K++  K  +    +T KSWW +P
Sbjct: 18  GGRNPEISDSNMLKYVNKVYFGRSSQPPALDPSPFDRKQNAKKKRKEESRTTSKSWWNEP 77

Query: 71  ELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           ++KR+RR+AKYK++A+EGK+K S+KKG RW K K  +I+ G+
Sbjct: 78  KMKRKRRLAKYKMFALEGKLKESLKKGSRWIKKKYCKIVHGY 119

BLAST of Lsi05G006060 vs. TrEMBL
Match: M5W2H8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024789mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.7e-14
Identity = 49/109 (44.95%), Postives = 65/109 (59.63%), Query Frame = 1

Query: 11  GGRSLEVIDVRKLSENK-MYLNQSQKRAIVDPSFVK------------RHVTKTPESSKN 70
           G R+L++++VR+LSEN+ MY+ +S     +DPS+              R   K P+   +
Sbjct: 13  GCRNLDMVNVRRLSENRTMYMGRSH----LDPSWAPYPMKTRQRDIQLRIGGKKPKERSS 72

Query: 71  STKKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRII 107
              K WW  PE KRR RVA+YKLY  EGKVK S+KKG RWFK KC  I+
Sbjct: 73  KPSKLWWNDPEFKRRGRVARYKLYGAEGKVKRSLKKGYRWFKRKCLEIV 117

BLAST of Lsi05G006060 vs. TrEMBL
Match: A0A151TW82_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_010537 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.7e-14
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 1

Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKR-----AIVDPSFVKRHVTKTPESS 60
           MEG+ HH  +    L  ++V   + NKM + +S        A V+PS  +        +S
Sbjct: 1   MEGVQHHYARSCSYLHEVNVGSTNRNKMIVGRSNTTSSSLCAYVEPSQERYGTQMVVTTS 60

Query: 61  KNSTKKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIIS 108
           K   +  WW  PE KR+RRVAKYKLYA EGK+K+S+KKG+RWFK KC +I++
Sbjct: 61  K---RMWWWNDPENKRKRRVAKYKLYAKEGKLKHSVKKGLRWFKNKCIKIVN 109

BLAST of Lsi05G006060 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-12
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1

Query: 54  SSKNSTKKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISG 109
           SS ++  K WW  PE+KR+RRVAKYKLY+ EGK+K +++K  +W K +CS+II G
Sbjct: 69  SSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

BLAST of Lsi05G006060 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 57.0 bits (136), Expect = 8.4e-09
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 1

Query: 68  ELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           E+KR++R+A+YK Y VEGKVK+++K G RW K KC +I+  F
Sbjct: 69  EMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

BLAST of Lsi05G006060 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07
Identity = 22/59 (37.29%), Postives = 41/59 (69.49%), Query Frame = 1

Query: 50  KTPESSKNSTKKSW-WKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIIS 108
           + P+  ++S+  SW +  P+L+R++RV  Y+ Y VEGK+K S +K  +W K KC+++++
Sbjct: 58  QNPKKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

BLAST of Lsi05G006060 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 51.6 bits (122), Expect = 3.5e-07
Identity = 39/114 (34.21%), Postives = 53/114 (46.49%), Query Frame = 1

Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMY----LNQSQKRAIVDPSFVKRHVTKTPESSK 60
           M+G   HP    R+L V     +   K Y      Q        P F          +SK
Sbjct: 1   MDGFGSHP----RTLAVDQWMDIVNGKGYGVGGTTQVYSTRPDSPKFQPSIPPPPGSTSK 60

Query: 61  NSTKKSWWK--KPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISG 109
             T  + W+    E KR++R+A YK YA+EGKVK+++KKG  W K + S II G
Sbjct: 61  TRTTATPWRLIDAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

BLAST of Lsi05G006060 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511))

HSP 1 Score: 51.2 bits (121), Expect = 4.6e-07
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 1

Query: 33  SQKRAIVDPSFVKRHVTKTPESSKNSTKKSWWK---KPELKRRRRVAKYKLYAVEGKVKN 92
           S   A  +P+ V R  +       N  KK  +K   + E++R++RVA Y +Y VEG+VK 
Sbjct: 48  STYNAYQNPTIV-RDDSNNKSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEGRVKG 107

Query: 93  SIKKGIRWFKTKCSRIISG 109
           S+KK  +WFK  CS  + G
Sbjct: 108 SMKKSFKWFKETCSNAVYG 125

BLAST of Lsi05G006060 vs. NCBI nr
Match: gi|700201003|gb|KGN56136.1| (hypothetical protein Csa_3G077700 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.5e-44
Identity = 90/109 (82.57%), Postives = 99/109 (90.83%), Query Frame = 1

Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNSTK 60
           MEGLHHHPNKGGRSLEVIDVRKLS NK+YLNQSQ+R +VDPSFVK++VTKT E SK+  K
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 61  KSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           K WWKKPE++RR+RVAKYKLY VEGKVK SIKKGIRW KTKCSRIISGF
Sbjct: 61  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

BLAST of Lsi05G006060 vs. NCBI nr
Match: gi|659126920|ref|XP_008463430.1| (PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 9.9e-44
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 1

Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNSTK 60
           MEGLHHH NKGGRSLEV+DVRKLSENKMYLNQSQ+R +VDPSFVKR+VTKT E SK   K
Sbjct: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSK--MK 60

Query: 61  KSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           KSWWKKPE+KRR+RVAKYKLYAVEGKVK+SIKKG RW KTKCSRIISGF
Sbjct: 61  KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 107

BLAST of Lsi05G006060 vs. NCBI nr
Match: gi|659082109|ref|XP_008441676.1| (PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 3.9e-32
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = 1

Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVK-RHVTKTPESSKNST 60
           ME +H  PNKG R+L++IDVRKLSENKM+LNQS++ + +DPS +K R +  T ESSK ST
Sbjct: 3   MERVHRRPNKGDRNLKIIDVRKLSENKMHLNQSRRHSTIDPSSMKPRAIKTTSESSKAST 62

Query: 61  KKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
            K WWK  E+KRRRRVAKYKLY VEG+VK SI+KGI WFK +C+RIISGF
Sbjct: 63  VKLWWKNSEMKRRRRVAKYKLYTVEGRVKESIRKGINWFKCRCTRIISGF 112

BLAST of Lsi05G006060 vs. NCBI nr
Match: gi|700206328|gb|KGN61447.1| (hypothetical protein Csa_2G123580 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 3.1e-29
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1

Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTP-ESSKNST 60
           MEG+H  PNKG R+L +IDVRKLSENK++LNQS +++ ++PS VK    KT  ESSK S 
Sbjct: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98

Query: 61  KKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
            KSW KK E+KRRRRVAKYKLY VEGKVK+SI+KGI WFK K +RI+SGF
Sbjct: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

BLAST of Lsi05G006060 vs. NCBI nr
Match: gi|590644563|ref|XP_007031116.1| (Uncharacterized protein TCM_026743 [Theobroma cacao])

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 1

Query: 11  GGRSLEVIDVRKLSE-NKMYLNQSQKRAIVDPSFV--KRHVTKTPESSKNSTKKSWWKKP 70
           GGR+ E+ D   L   NK+Y  +S +   +DPS    K++  K  +    +T KSWW +P
Sbjct: 18  GGRNPEISDSNMLKYVNKVYFGRSSQPPALDPSPFDRKQNAKKKRKEESRTTSKSWWNEP 77

Query: 71  ELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           ++KR+RR+AKYK++A+EGK+K S+KKG RW K K  +I+ G+
Sbjct: 78  KMKRKRRLAKYKMFALEGKLKESLKKGSRWIKKKYCKIVHGY 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7N5_CUCSA3.1e-4482.57Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1[more]
A0A0A0LL30_CUCSA2.2e-2966.36Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1[more]
A0A061F3Z2_THECC3.3e-1443.14Uncharacterized protein OS=Theobroma cacao GN=TCM_026743 PE=4 SV=1[more]
M5W2H8_PRUPE5.7e-1444.95Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024789mg PE=4 SV=1[more]
A0A151TW82_CAJCA9.7e-1442.86Uncharacterized protein OS=Cajanus cajan GN=KK1_010537 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G05725.13.7e-1254.55 Protein of unknown function (DUF3511)[more]
AT2G47480.18.4e-0954.76 Protein of unknown function (DUF3511)[more]
AT2G19460.11.6e-0737.29 Protein of unknown function (DUF3511)[more]
AT3G62640.13.5e-0734.21 Protein of unknown function (DUF3511)[more]
AT1G72720.14.6e-0737.97 Protein of unknown function (DUF3511)[more]
Match NameE-valueIdentityDescription
gi|700201003|gb|KGN56136.1|4.5e-4482.57hypothetical protein Csa_3G077700 [Cucumis sativus][more]
gi|659126920|ref|XP_008463430.1|9.9e-4485.32PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo][more]
gi|659082109|ref|XP_008441676.1|3.9e-3266.36PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo][more]
gi|700206328|gb|KGN61447.1|3.1e-2966.36hypothetical protein Csa_2G123580 [Cucumis sativus][more]
gi|590644563|ref|XP_007031116.1|4.8e-1443.14Uncharacterized protein TCM_026743 [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G006060.1Lsi05G006060.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 64..108
score: 9.0
NoneNo IPR availablePANTHERPTHR33193FAMILY NOT NAMEDcoord: 2..109
score: 8.2
NoneNo IPR availablePANTHERPTHR33193:SF3SUBFAMILY NOT NAMEDcoord: 2..109
score: 8.2

The following gene(s) are paralogous to this gene:

None