CmoCh04G010200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G010200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 5114415 .. 5114753 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACCGAGGAAGGCATTCACCACCATCCACACAACAGTACTGACTGGAGCCTTGAACCCATGGACGAAAATAAACTAAGCGATAATAATATGTACTTAAACCAGCCACAAAAGCGAGTTATCATCAGCTCATCATTTGTGAAACAACATATCATCAAGACATCGGAATCGTCGAAGCGTTCGACCAGGTCGTGGTGGAAGAACCCGAAAATAAAGAGACGGCGGCGTGTTGCCAAGTACAGATTCTATACTGTTGAAGGGAAGGTAAAGAGTTCCATAAAGAAAGGAATCAAATGGTTGAAAACCAAGTGTAGCAGAATCATATTTGGGTTTTGA

mRNA sequence

ATGACGACCGAGGAAGGCATTCACCACCATCCACACAACAGTACTGACTGGAGCCTTGAACCCATGGACGAAAATAAACTAAGCGATAATAATATGTACTTAAACCAGCCACAAAAGCGAGTTATCATCAGCTCATCATTTGTGAAACAACATATCATCAAGACATCGGAATCGTCGAAGCGTTCGACCAGGTCGTGGTGGAAGAACCCGAAAATAAAGAGACGGCGGCGTGTTGCCAAGTACAGATTCTATACTGTTGAAGGGAAGGTAAAGAGTTCCATAAAGAAAGGAATCAAATGGTTGAAAACCAAGTGTAGCAGAATCATATTTGGGTTTTGA

Coding sequence (CDS)

ATGACGACCGAGGAAGGCATTCACCACCATCCACACAACAGTACTGACTGGAGCCTTGAACCCATGGACGAAAATAAACTAAGCGATAATAATATGTACTTAAACCAGCCACAAAAGCGAGTTATCATCAGCTCATCATTTGTGAAACAACATATCATCAAGACATCGGAATCGTCGAAGCGTTCGACCAGGTCGTGGTGGAAGAACCCGAAAATAAAGAGACGGCGGCGTGTTGCCAAGTACAGATTCTATACTGTTGAAGGGAAGGTAAAGAGTTCCATAAAGAAAGGAATCAAATGGTTGAAAACCAAGTGTAGCAGAATCATATTTGGGTTTTGA

Homology

[Close]

BLAST of CmoCh04G010200 vs. TrEMBL
Match: A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-27
Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIISSSFVKQHIIKTSESSKRSTR 64
           EG+HHHP N    SLE +D  KLS N +YLNQ Q+R ++  SFVKQ++ KTSE SK   +
Sbjct: 2   EGLHHHP-NKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 61

Query: 65  S-WWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
             WWK P+++RR+RVAKY+ Y VEGKVK SIKKGI+W+KTKCSRII GF
Sbjct: 62  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of CmoCh04G010200 vs. TrEMBL
Match: A0A0A0LL30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.7e-17
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 1


Query: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIISSSFVKQHIIKT-SESSKRST 64
           EG+H  P N  D +L  +D  KLS+N ++LNQ  ++  ++ S VK   +KT SESSK S 
Sbjct: 40  EGVHRRP-NKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 99

Query: 65  -RSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
            +SW K  ++KRRRRVAKY+ YTVEGKVK SI+KGI W K K +RI+ GF
Sbjct: 100 GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of CmoCh04G010200 vs. TrEMBL
Match: R0I4X9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10016388mg PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1


Query: 54  KTSESSKRSTRSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFG 112
           K S S   S + WW +P+IKR+RRVAKY+ Y+ EGK+K+S++K  KW+K +CS+II G
Sbjct: 67  KRSSSHSTSLKGWWNDPEIKRKRRVAKYKLYSAEGKMKTSLRKSYKWIKIQCSKIIHG 124

[Close]

BLAST of CmoCh04G010200 vs. TrEMBL
Match: B9RFH1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434550 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 65  SWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
           SWW  P+ KR++RVA+Y+FY VEGKVK SIKKG +W K  CSRI+ GF
Sbjct: 48  SWWNAPETKRKKRVAQYKFYAVEGKVKISIKKGFRWFKKTCSRIVHGF 95

[Close]

BLAST of CmoCh04G010200 vs. TrEMBL
Match: B9I713_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01190g PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 50  QHIIKTSESSKRSTRSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRII 109
           QH+ K S    +S +SWW +P+ KR+ RVA+Y+ Y VEGKVKSSIKKG+ W+K  C RII
Sbjct: 33  QHVAKRSS---KSAKSWWNSPETKRKTRVARYKLYAVEGKVKSSIKKGLCWVKRTCYRII 89

[Close]

BLAST of CmoCh04G010200 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-12
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1


Query: 37  PQKRVIISSSFVKQHIIKTSESSKRST--RSWWKNPKIKRRRRVAKYRFYTVEGKVKSSI 96
           P K  I      K   ++   SS  ST  + WW +P+IKR+RRVAKY+ Y+ EGK+K ++
Sbjct: 47  PIKTDIWRKMSYKDMPVRPRRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITL 106

Query: 97  KKGIKWLKTKCSRIIFG 112
           +K  KW+K +CS+II G
Sbjct: 107 RKSYKWIKIQCSKIIHG 123

[Close]

BLAST of CmoCh04G010200 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-08
Identity = 22/42 (52.38%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 71  KIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
           ++KR++R+A+Y+ YTVEGKVKS++K G +W+K KC +I+  F
Sbjct: 69  EMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of CmoCh04G010200 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 23/49 (46.94%), Postives = 37/49 (75.51%), Query Frame = 1


Query: 62  STRSW-WKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRII 110
           S+ SW + +P ++R++RV  YR YTVEGK+K S +K  KW+K KC++++
Sbjct: 67  SSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

[Close]

BLAST of CmoCh04G010200 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 51.6 bits (122), Expect = 3.6e-07
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 56  SESSKRSTRSWWK--NPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFG 112
           S S  R+T + W+  + + KR++R+A Y+ Y +EGKVKS++KKG  W+K + S II G
Sbjct: 53  STSKTRTTATPWRLIDAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of CmoCh04G010200 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 24/61 (39.34%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 53  IKTSESSKRSTRSWW-KNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFG 112
           +K  +S  RS +SW   +P+++R++RVA Y+ Y VEGKVK S +   +WLK + +++++G
Sbjct: 45  VKKEKSIARS-KSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYG 104

[Close]

BLAST of CmoCh04G010200 vs. NCBI nr
Match: gi|659126920|ref|XP_008463430.1| (PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 4.6e-28
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 1


Query: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIISSSFVKQHIIKTSESSKRSTR 64
           EG+HHH  N    SLE MD  KLS+N MYLNQ Q+R ++  SFVK+++ KT E SK   +
Sbjct: 2   EGLHHH-QNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSKMK-K 61

Query: 65  SWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
           SWWK P++KRR+RVAKY+ Y VEGKVKSSIKKG +W+KTKCSRII GF
Sbjct: 62  SWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 107

[Close]

BLAST of CmoCh04G010200 vs. NCBI nr
Match: gi|700201003|gb|KGN56136.1| (hypothetical protein Csa_3G077700 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-27
Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIISSSFVKQHIIKTSESSKRSTR 64
           EG+HHHP N    SLE +D  KLS N +YLNQ Q+R ++  SFVKQ++ KTSE SK   +
Sbjct: 2   EGLHHHP-NKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 61

Query: 65  S-WWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
             WWK P+++RR+RVAKY+ Y VEGKVK SIKKGI+W+KTKCSRII GF
Sbjct: 62  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of CmoCh04G010200 vs. NCBI nr
Match: gi|659082109|ref|XP_008441676.1| (PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 9.3e-21
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 3   TEEGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIISSSFVKQHIIKT-SESSKR 62
           T E +H  P N  D +L+ +D  KLS+N M+LNQ ++   I  S +K   IKT SESSK 
Sbjct: 2   TMERVHRRP-NKGDRNLKIIDVRKLSENKMHLNQSRRHSTIDPSSMKPRAIKTTSESSKA 61

Query: 63  ST-RSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
           ST + WWKN ++KRRRRVAKY+ YTVEG+VK SI+KGI W K +C+RII GF
Sbjct: 62  STVKLWWKNSEMKRRRRVAKYKLYTVEGRVKESIRKGINWFKCRCTRIISGF 112

[Close]

BLAST of CmoCh04G010200 vs. NCBI nr
Match: gi|700206328|gb|KGN61447.1| (hypothetical protein Csa_2G123580 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 8.1e-17
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 1


Query: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIISSSFVKQHIIKT-SESSKRST 64
           EG+H  P N  D +L  +D  KLS+N ++LNQ  ++  ++ S VK   +KT SESSK S 
Sbjct: 40  EGVHRRP-NKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 99

Query: 65  -RSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 113
            +SW K  ++KRRRRVAKY+ YTVEGKVK SI+KGI W K K +RI+ GF
Sbjct: 100 GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of CmoCh04G010200 vs. NCBI nr
Match: gi|727582407|ref|XP_010464119.1| (PREDICTED: uncharacterized protein LOC104744722 [Camelina sativa])

HSP 1 Score: 72.4 bits (176), Expect = 5.6e-10
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1


Query: 54  KTSESSKRSTRSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFG 112
           K S S   S + WW +P+IKR+RRVAKY+ Y+ EGK+K+++KK  KWLK +CS+II G
Sbjct: 67  KKSTSHSTSLKGWWNDPEIKRKRRVAKYKLYSAEGKMKTTLKKSYKWLKIQCSKIIHG 124

The following BLAST results are available for this feature:

BLAST of CmoCh04G010200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G010200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7N5_CUCSA	1.6e-27	61.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1	[more]
A0A0A0LL30_CUCSA	5.7e-17	52.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123580 PE=4 SV=1	[more]
R0I4X9_9BRAS	5.1e-10	53.45	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10016388mg PE=4 SV=1	[more]
B9RFH1_RICCO	5.1e-10	64.58	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434550 PE=4 SV=1	[more]
B9I713_POPTR	1.1e-09	56.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01190g PE=4 SV=1	[more]

BLAST of CmoCh04G010200 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05725.1	8.4e-12	44.16	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	2.5e-08	52.38	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	1.3e-07	46.94	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	3.6e-07	44.83	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	1.4e-06	39.34	Protein of unknown function (DUF3511)	[more]

BLAST of CmoCh04G010200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126920\|ref\|XP_008463430.1\|	4.6e-28	62.96	PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo]	[more]
gi\|700201003\|gb\|KGN56136.1\|	2.3e-27	61.47	hypothetical protein Csa_3G077700 [Cucumis sativus]	[more]
gi\|659082109\|ref\|XP_008441676.1\|	9.3e-21	55.36	PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo]	[more]
gi\|700206328\|gb\|KGN61447.1\|	8.1e-17	52.73	hypothetical protein Csa_2G123580 [Cucumis sativus]	[more]
gi\|727582407\|ref\|XP_010464119.1\|	5.6e-10	55.17	PREDICTED: uncharacterized protein LOC104744722 [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G010200.1	CmoCh04G010200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 67..110 score: 2.2
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 56..112 score: 2.6
None	No IPR available	PANTHER	PTHR33193:SF3	SUBFAMILY NOT NAMED	coord: 56..112 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G010200	Cucsa.059870	Cucumber (Gy14) v1	cgycmoB0077
CmoCh04G010200	CmaCh04G009490	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G010200	Cla005302	Watermelon (97103) v1	cmowmB651
CmoCh04G010200	Csa3G077700	Cucumber (Chinese Long) v2	cmocuB689
CmoCh04G010200	MELO3C025388	Melon (DHL92) v3.5.1	cmomeB681
CmoCh04G010200	ClCG10G005480	Watermelon (Charleston Gray)	cmowcgB612
CmoCh04G010200	CSPI03G05200	Wild cucumber (PI 183967)	cmocpiB700
CmoCh04G010200	Lsi05G006060	Bottle gourd (USVL1VR-Ls)	cmolsiB682
CmoCh04G010200	Cp4.1LG01g08090	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G010200	MELO3C025388.2	Melon (DHL92) v3.6.1	cmomedB772
CmoCh04G010200	CsaV3_3G005210	Cucumber (Chinese Long) v3	cmocucB0819
CmoCh04G010200	Cla97C10G189710	Watermelon (97103) v2	cmowmbB687
CmoCh04G010200	Bhi11G000490	Wax gourd	cmowgoB0813
CmoCh04G010200	CsGy3G005270	Cucumber (Gy14) v2	cgybcmoB391
CmoCh04G010200	Carg00062	Silver-seed gourd	carcmoB0923

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G010200	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G010200	Melon (DHL92) v3.6.1	cmomedB776
CmoCh04G010200	Silver-seed gourd	carcmoB1070
CmoCh04G010200	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G010200	Watermelon (97103) v2	cmowmbB689
CmoCh04G010200	Wax gourd	cmowgoB0817
CmoCh04G010200	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh04G010200	Cucurbita moschata (Rifu)	cmocmoB290
CmoCh04G010200	Cucumber (Gy14) v1	cgycmoB0076
CmoCh04G010200	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G010200	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G010200	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G010200	Melon (DHL92) v3.5.1	cmomeB684
CmoCh04G010200	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G010200	Watermelon (97103) v1	cmowmB653
CmoCh04G010200	Cucurbita pepo (Zucchini)	cmocpeB644
CmoCh04G010200	Bottle gourd (USVL1VR-Ls)	cmolsiB684