MELO3C024968 (gene) Melon (DHL92) v3.5.1

NameMELO3C024968
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSerine-rich protein-related, putative
Locationchr1 : 11349343 .. 11350019 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACAACGCAAACACCAAAAATCGAGGAGTTCACTACCAATGTCAAAATTTGCTTACATTTCTCAAACATTTCCTTTCTCCCATATCAACAATATTTTTCCCTTCAAACCACAAAAACCCAACACCAACAATCCCCAAATTTCACAAACCCTAACTATTCCATCTTTCTTCTAACTAAAATCTGATTCAATCCCCCATGGATAACAAAGCAGATCGCAAAGCTCCTAGGCCCAACGATAGAAACATTCCCAATCACAATCACAATCACAATCACCATCACAATCACCATCACTATCACAGAATGGCAATCACAGAGTTGAATTTAGCAGATCTTAAGCACAATAATCATCACCTCCTCGTCTCTCCCTCGCCACCCTCCACCGCCACCAAGACTCCCTCCTCTGCTAAAGCCAACTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATGCTGGAATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAACCTACCGAAATAATGGGACCTTTTTCGCCTTGACTTGCCTTTTTCCTTCTTTTCTGGAGGCGGCTTTGTTTTGTTTATTTGTTCCTTTGTGTTCCTGCTTCCTCTTCCAGTTGGTGATGCAAAAATGTGGGGAATGAATGGGGGATTT

mRNA sequence

GAACAACGCAAACACCAAAAATCGAGGAGTTCACTACCAATGTCAAAATTTGCTTACATTTCTCAAACATTTCCTTTCTCCCATATCAACAATATTTTTCCCTTCAAACCACAAAAACCCAACACCAACAATCCCCAAATTTCACAAACCCTAACTATTCCATCTTTCTTCTAACTAAAATCTGATTCAATCCCCCATGGATAACAAAGCAGATCGCAAAGCTCCTAGGCCCAACGATAGAAACATTCCCAATCACAATCACAATCACAATCACCATCACAATCACCATCACTATCACAGAATGGCAATCACAGAGTTGAATTTAGCAGATCTTAAGCACAATAATCATCACCTCCTCGTCTCTCCCTCGCCACCCTCCACCGCCACCAAGACTCCCTCCTCTGCTAAAGCCAACTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATGCTGGAATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAACCTACCGAAATAATGGGACCTTTTTCGCCTTGACTTGCCTTTTTCCTTCTTTTCTGGAGGCGGCTTTGTTTTGTTTATTTGTTCCTTTGTGTTCCTGCTTCCTCTTCCAGTTGGTGATGCAAAAATGTGGGGAATGAATGGGGGATTT

Coding sequence (CDS)

ATGGATAACAAAGCAGATCGCAAAGCTCCTAGGCCCAACGATAGAAACATTCCCAATCACAATCACAATCACAATCACCATCACAATCACCATCACTATCACAGAATGGCAATCACAGAGTTGAATTTAGCAGATCTTAAGCACAATAATCATCACCTCCTCGTCTCTCCCTCGCCACCCTCCACCGCCACCAAGACTCCCTCCTCTGCTAAAGCCAACTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATGCTGGAATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAACCTACCGAAATAATGGGACCTTTTTCGCCTTGA

Protein sequence

MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPFSP*
BLAST of MELO3C024968 vs. TrEMBL
Match: A0A0A0K3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.7e-49
Identity = 96/122 (78.69%), Postives = 107/122 (87.70%), Query Frame = 1

Query: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60
           MDNKAD +APRPNDRN    NHN+NH+HNHHH+H+MA T+LNL DLK N   +LVSPSPP
Sbjct: 1   MDNKADHRAPRPNDRN----NHNNNHNHNHHHHHKMAFTDLNLEDLKQNPR-ILVSPSPP 60

Query: 61  ST-ATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPF 120
           S+ A +TPSSAKANCLCSPTTHIGSFRCRHHRH+GMIRGGSVGSNLSDL RKPTEI+G F
Sbjct: 61  SSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSF 117

Query: 121 SP 122
           SP
Sbjct: 121 SP 117

BLAST of MELO3C024968 vs. TrEMBL
Match: V7B5G4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G085500g PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1

Query: 38  ITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIR 97
           + EL++  LK N+H +LVSP+   T  +  S  + NCLCSPTTH+GSFRCRHHR + M R
Sbjct: 17  LPELDVEILKKNSH-MLVSPTTSETLNRKRSPGRMNCLCSPTTHVGSFRCRHHRSSDMRR 76

Query: 98  GGSVGSNLSDLARKPTEIMGPFS 121
           G S+GSNL++L  K     GP S
Sbjct: 77  GKSIGSNLAELGSK----AGPIS 94

BLAST of MELO3C024968 vs. TrEMBL
Match: A0A0S3S6J5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G197000 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-12
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1

Query: 38  ITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHR-HAGMI 97
           + EL++  +K N+H  ++SP+   T+    S  + NCLCSPTTH+GSFRCRHHR  +GM 
Sbjct: 23  LPELDVEIIKKNSH--MLSPTSSQTSNMKKSPGRMNCLCSPTTHVGSFRCRHHRSSSGMR 82

Query: 98  RGGSVGSNLSDLARKPTEIMGPFS 121
           RG S+GSNL++L  K     GP S
Sbjct: 83  RGKSIGSNLAELGSK----AGPIS 100

BLAST of MELO3C024968 vs. TrEMBL
Match: A0A0L9VBG2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g092600 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-12
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1

Query: 38  ITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHR-HAGMI 97
           + EL++  +K N+H  ++SP+   T+    S  + NCLCSPTTH+GSFRCRHHR  +GM 
Sbjct: 23  LPELDVEIIKKNSH--MLSPTSSQTSNMKKSPGRMNCLCSPTTHVGSFRCRHHRSSSGMR 82

Query: 98  RGGSVGSNLSDLARKPTEIMGPFS 121
           RG S+GSNL++L  K     GP S
Sbjct: 83  RGKSIGSNLAELGSK----AGPIS 100

BLAST of MELO3C024968 vs. TrEMBL
Match: V4LQF3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015868mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.6e-12
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 1

Query: 19  NHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSP 78
           NH+HNHNH+H+HHH    +   LNL  LK       VSP+     +   SS K  CLCSP
Sbjct: 25  NHSHNHNHNHDHHHQRSASPCNLNLC-LKR------VSPANTPKPSVAVSSQKIKCLCSP 84

Query: 79  TTHIGSFRCRHHRHAGMIRGGSVGSN 105
           TTH GSFRC  HR     + G++GS+
Sbjct: 85  TTHPGSFRCSFHRRLENEKNGTLGSS 103

BLAST of MELO3C024968 vs. TAIR10
Match: AT5G55980.1 (AT5G55980.1 serine-rich protein-related)

HSP 1 Score: 63.9 bits (154), Expect = 7.7e-11
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1

Query: 56  SPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDL 109
           SPS     + +  S + NCLCSPTTH GSFRCR+HR   + R GS+GSNL+ L
Sbjct: 46  SPSLKRWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

BLAST of MELO3C024968 vs. TAIR10
Match: AT3G13227.1 (AT3G13227.1 serine-rich protein-related)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 31/52 (59.62%), Postives = 32/52 (61.54%), Query Frame = 1

Query: 61  STATKTPSSAKANCLCSPTTHIGSFRCRHHRH---AGMIRGGSVGSNLSDLA 110
           S      SS + NCLC+PTTH GSFRCR+HR     GM RG SV SNLS LA
Sbjct: 52  SVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

BLAST of MELO3C024968 vs. TAIR10
Match: AT5G20370.1 (AT5G20370.1 serine-rich protein-related)

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-08
Identity = 28/77 (36.36%), Postives = 35/77 (45.45%), Query Frame = 1

Query: 15 RNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANC 74
          R + +    HN+HH+HH     +    NL +L+   +     P P      +    K  C
Sbjct: 13 RPLSSSQRLHNNHHHHHRQRSPSPCNKNL-NLRLKFYSPGSIPKPSVVTVSSNHQTKRKC 72

Query: 75 LCSPTTHIGSFRCRHHR 92
          LCSPTTH GSFRC  HR
Sbjct: 73 LCSPTTHPGSFRCSFHR 88

BLAST of MELO3C024968 vs. TAIR10
Match: AT5G25280.1 (AT5G25280.1 serine-rich protein-related)

HSP 1 Score: 53.9 bits (128), Expect = 8.0e-08
Identity = 34/95 (35.79%), Postives = 44/95 (46.32%), Query Frame = 1

Query: 25  NHHHNHHHYHRMAI-TELNL---ADLKHN------------NHHLLVSPSPPSTATKTPS 84
           +H+ N+HH HR A  T +NL   A +  +            N  + VS + PS   K P 
Sbjct: 62  SHNQNNHHQHRSASPTRVNLFTSAPMTQSFRYSIDNRSISPNRSIAVSSNKPSNHHKIPD 121

Query: 85  SAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGS 104
           S +  C+CSPTTH GSFRC  H++     G    S
Sbjct: 122 SRR-RCMCSPTTHPGSFRCSLHKNVANPHGQGTAS 155

BLAST of MELO3C024968 vs. TAIR10
Match: AT1G67910.1 (AT1G67910.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 6.8e-07
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 1

Query: 64  TKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSV-GSNLSDLARKPTE 115
           ++  S  K NCLCSPTTH GSFRCR HR   + R  S+  ++L D   KP +
Sbjct: 34  SRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPAD 85

BLAST of MELO3C024968 vs. NCBI nr
Match: gi|659126143|ref|XP_008463032.1| (PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 1.0e-68
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1

Query: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60
           MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP
Sbjct: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60

Query: 61  STATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPFS 120
           STATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPFS
Sbjct: 61  STATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPFS 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of MELO3C024968 vs. NCBI nr
Match: gi|700189152|gb|KGN44385.1| (hypothetical protein Csa_7G278200 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 6.7e-49
Identity = 96/122 (78.69%), Postives = 107/122 (87.70%), Query Frame = 1

Query: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60
           MDNKAD +APRPNDRN    NHN+NH+HNHHH+H+MA T+LNL DLK N   +LVSPSPP
Sbjct: 1   MDNKADHRAPRPNDRN----NHNNNHNHNHHHHHKMAFTDLNLEDLKQNPR-ILVSPSPP 60

Query: 61  ST-ATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPF 120
           S+ A +TPSSAKANCLCSPTTHIGSFRCRHHRH+GMIRGGSVGSNLSDL RKPTEI+G F
Sbjct: 61  SSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSF 117

Query: 121 SP 122
           SP
Sbjct: 121 SP 117

BLAST of MELO3C024968 vs. NCBI nr
Match: gi|703127862|ref|XP_010103953.1| (hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-18
Identity = 56/115 (48.70%), Postives = 72/115 (62.61%), Query Frame = 1

Query: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60
           MD K ++++P+     I  +N N           ++ I ++NL +LK   H LL SP   
Sbjct: 1   MDEKVEQRSPQ----KIKENNMNF----------KLKIPDINLNELKKQTH-LLASPRAQ 60

Query: 61  STATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEI 116
              TK+ SS + NCLCSPTTH GSFRCRHHR + M+RGGSVGSNLS+LARKP  I
Sbjct: 61  RAVTKS-SSTRWNCLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAI 99

BLAST of MELO3C024968 vs. NCBI nr
Match: gi|922379672|ref|XP_013460070.1| (PGPS/D10 protein, putative [Medicago truncatula])

HSP 1 Score: 89.0 bits (219), Expect = 6.4e-15
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1

Query: 38  ITELNLADLKHNNHHLLVSPSPPSTAT------KTPSSAKANCLCSPTTHIGSFRCRHHR 97
           I EL++ +    N H+LVSP+  ++ T      +  SS + NCLCSPTTH GSFRCRHHR
Sbjct: 16  IPELDMMNAFKKNSHMLVSPTSLASPTSLKSNPRKSSSGRWNCLCSPTTHAGSFRCRHHR 75

Query: 98  HAGMIRGGSVGSNLSDLARK 112
            +GMIRGGSVGSNL+ L  K
Sbjct: 76  SSGMIRGGSVGSNLAQLGNK 95

BLAST of MELO3C024968 vs. NCBI nr
Match: gi|700200858|gb|KGN55991.1| (hypothetical protein Csa_3G045050 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-14
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1

Query: 35  RMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 94
           + A+ E    DLK  N +LL+SP+  S  TK+  S K+NCLCSPTTHIGSFRCR HR   
Sbjct: 21  KSAMVETEFDDLK-KNANLLMSPTALSRMTKS-RSIKSNCLCSPTTHIGSFRCRRHRSTS 80

Query: 95  MIRGGSVGSNLSDLARK 112
           + RGGSVGSNLSDL +K
Sbjct: 81  ISRGGSVGSNLSDLVQK 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K3W3_CUCSA4.7e-4978.69Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278200 PE=4 SV=1[more]
V7B5G4_PHAVU3.7e-1451.81Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G085500g PE=4 SV=1[more]
A0A0S3S6J5_PHAAN2.1e-1248.81Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G197000 PE=... [more]
A0A0L9VBG2_PHAAN2.1e-1248.81Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g092600 PE=4 SV=1[more]
V4LQF3_EUTSA4.6e-1246.51Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015868mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G55980.17.7e-1154.72 serine-rich protein-related[more]
AT3G13227.11.5e-0959.62 serine-rich protein-related[more]
AT5G20370.13.6e-0836.36 serine-rich protein-related[more]
AT5G25280.18.0e-0835.79 serine-rich protein-related[more]
AT1G67910.16.8e-0748.08 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659126143|ref|XP_008463032.1|1.0e-68100.00PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A [Cucumi... [more]
gi|700189152|gb|KGN44385.1|6.7e-4978.69hypothetical protein Csa_7G278200 [Cucumis sativus][more]
gi|703127862|ref|XP_010103953.1|6.1e-1848.70hypothetical protein L484_020205 [Morus notabilis][more]
gi|922379672|ref|XP_013460070.1|6.4e-1555.00PGPS/D10 protein, putative [Medicago truncatula][more]
gi|700200858|gb|KGN55991.1|2.4e-1459.74hypothetical protein Csa_3G045050 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009693 ethylene biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024968T1MELO3C024968T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 1..109
score: 7.0
NoneNo IPR availablePANTHERPTHR33132:SF9SUBFAMILY NOT NAMEDcoord: 1..109
score: 7.0