Carg23345 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23345
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Serine-rich protein-related, putative
Location	Cucurbita_argyrosperma_scaffold_165 : 44946 .. 45269 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCACAAACCAGATCACAGGGCCCCAAGGCCCACTCACAGACACAGCCTCGATCATCACAACAAAATCGGATTCACAGATTTCGATTTAGAGGATCTGAAGCGGAGCCCTCGCGTACTTGTGTCTCCGTCCTTGCATTCTTCGCCGCAGAAGGTCTCCCCTGCGGCCAAGGGGAGTTGTCTCTGCTCTCCCACGACGCATATTGGCTCCTTCCGATGTCGGCACCACCGGCGCTCTGCTGGTATCCTCCGCGGCGGATCTGTCGGCTCCAATCTCTCCGATTTGGATCGTAAATCGAGTGAATTTATGGGATTCTCCTAG

mRNA sequence

ATGGATCACAAACCAGATCACAGGGCCCCAAGGCCCACTCACAGACACAGCCTCGATCATCACAACAAAATCGGATTCACAGATTTCGATTTAGAGGATCTGAAGCGGAGCCCTCGCGTACTTGTGTCTCCGTCCTTGCATTCTTCGCCGCAGAAGGTCTCCCCTGCGGCCAAGGGGAGTTGTCTCTGCTCTCCCACGACGCATATTGGCTCCTTCCGATGTCGGCACCACCGGCGCTCTGCTGGTATCCTCCGCGGCGGATCTGTCGGCTCCAATCTCTCCGATTTGGATCGTAAATCGAGTGAATTTATGGGATTCTCCTAG

Coding sequence (CDS)

ATGGATCACAAACCAGATCACAGGGCCCCAAGGCCCACTCACAGACACAGCCTCGATCATCACAACAAAATCGGATTCACAGATTTCGATTTAGAGGATCTGAAGCGGAGCCCTCGCGTACTTGTGTCTCCGTCCTTGCATTCTTCGCCGCAGAAGGTCTCCCCTGCGGCCAAGGGGAGTTGTCTCTGCTCTCCCACGACGCATATTGGCTCCTTCCGATGTCGGCACCACCGGCGCTCTGCTGGTATCCTCCGCGGCGGATCTGTCGGCTCCAATCTCTCCGATTTGGATCGTAAATCGAGTGAATTTATGGGATTCTCCTAG

Protein sequence

MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMGFS

Homology

[Close]

BLAST of Carg23345 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_7G278200 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 3.1e-22
Identity = 65/114 (57.02%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   MDHKPDHRAPR--------PTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQK 60
           MD+K DHRAPR                      FTD +LEDLK++PR+LVSPS  SS   
Sbjct: 1   MDNKADHRAPRXXXXXXXXXXXXXXXXXXXXXAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  VSP-AAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG 106
            +P +AK +CLCSPTTHIGSFRCRHHR S G++RGGSVGSNLSDL RK +E +G
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHS-GMIRGGSVGSNLSDLTRKPTEIVG 113

[Close]

BLAST of Carg23345 vs. NCBI nr
Match: XP_022143490.1 (uncharacterized protein LOC111013367 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 23  KIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAG 82
           K    + DL++LK+S   LV      S    SP+ K +CLCSPTTHIGSFRCR H RS  
Sbjct: 21  KSALPELDLDELKKSSHNLVMSPTALSRMSKSPSTKSNCLCSPTTHIGSFRCRRH-RSTA 80

Query: 83  ILRGGSVGSNLSDLDRKSS 102
           I RGGSVGSNLSDL +KS+
Sbjct: 81  ISRGGSVGSNLSDLAQKSA 98

[Close]

BLAST of Carg23345 vs. NCBI nr
Match: XP_010103953.1 (uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1   MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGS 60
           MD K + R+P+    ++++   K+   D +L +LK+   +L SP    +  K S + + +
Sbjct: 1   MDEKVEQRSPQKIKENNMNF--KLKIPDINLNELKKQTHLLASPRAQRAVTK-SSSTRWN 60

Query: 61  CLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRK 100
           CLCSPTTH GSFRCRHHR S  +LRGGSVGSNLS+L RK
Sbjct: 61  CLCSPTTHAGSFRCRHHRSSC-MLRGGSVGSNLSELARK 95

[Close]

BLAST of Carg23345 vs. NCBI nr
Match: GAU13507.1 (hypothetical protein TSUD_128040 [Trifolium subterraneum])

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-12
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 35  KRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLS 94
           K+   +LVSP+ H +  + +   + +CLCSPTTH+GSFRCR HR SAG+ RGGSVGSNLS
Sbjct: 841 KKHSHMLVSPTSHKAESRKTSGGRSNCLCSPTTHVGSFRCRLHRASAGLHRGGSVGSNLS 900

Query: 95  DLDRKS 101
           +L  K+
Sbjct: 901 ELGNKA 906

[Close]

BLAST of Carg23345 vs. NCBI nr
Match: KGN55991.1 (hypothetical protein Csa_3G045050 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 5   PDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCS 64
           P    P+ T  +     +K    + + +DLK++  +L+SP+  S   K S + K +CLCS
Sbjct: 3   PIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTK-SRSIKSNCLCS 62

Query: 65  PTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKS 101
           PTTHIGSFRCR H RS  I RGGSVGSNLSDL +KS
Sbjct: 63  PTTHIGSFRCRRH-RSTSISRGGSVGSNLSDLVQKS 96

[Close]

BLAST of Carg23345 vs. TAIR10
Match: AT3G13227.1 (serine-rich protein-related)

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-09
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 28  DFDLEDLKRSPRVLVSPSLH--------SSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRR 87
           D   +D+KR     +SP +               S + + +CLC+PTTH GSFRCR+HRR
Sbjct: 24  DVSQDDIKRQEAYNMSPRVRXXXXXXXXXXXXSKSSSVRQNCLCAPTTHPGSFRCRYHRR 83

Query: 88  SAGI--LRGGSVGSNLSDL 97
           +AG+   RG SV SNLS L
Sbjct: 84  NAGLGMSRGTSVPSNLSML 102

[Close]

BLAST of Carg23345 vs. TAIR10
Match: AT5G55980.1 (serine-rich protein-related)

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-09
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 43  SPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSD-LDRKSS 102
           SPSL         + + +CLCSPTTH GSFRCR+HR  + + R GS+GSNL+  L  KSS
Sbjct: 46  SPSLKRWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDS-LTRAGSIGSNLAVLLSSKSS 105

Query: 103 EF 104
            F
Sbjct: 106 RF 106

[Close]

BLAST of Carg23345 vs. TAIR10
Match: AT5G20370.1 (serine-rich protein-related)

HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04
Identity = 21/42 (50.00%), Postives = 24/42 (57.14%), Query Frame = 0


Query: 38 PRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRR 80
          P V+   S H + +K        CLCSPTTH GSFRC  HRR
Sbjct: 56 PSVVTVSSNHQTKRK--------CLCSPTTHPGSFRCSFHRR 89

[Close]

BLAST of Carg23345 vs. TAIR10
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 0


Query: 58 KGSCLCSPTTHIGSFRCRHHR 79
          K +CLCSPTTH GSFRCR HR
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHR 61

[Close]

BLAST of Carg23345 vs. TAIR10
Match: AT5G25280.1 (serine-rich protein-related)

HSP 1 Score: 40.8 bits (94), Expect = 6.1e-04
Identity = 23/72 (31.94%), Postives = 37/72 (51.39%), Query Frame = 0


Query: 30  DLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSV 89
           D   +  +  + VS +  S+  K+ P ++  C+CSPTTH GSFRC  H+  A     G+ 
Sbjct: 96  DNRSISPNRSIAVSSNKPSNHHKI-PDSRRRCMCSPTTHPGSFRCSLHKNVANPHGQGTA 155

Query: 90  GSNLSDLDRKSS 102
               + L+ + S
Sbjct: 156 SYTTNGLNMRRS 166

[Close]

BLAST of Carg23345 vs. TrEMBL
Match: tr|A0A0A0K3W3|A0A0A0K3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-22
Identity = 65/114 (57.02%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   MDHKPDHRAPR--------PTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQK 60
           MD+K DHRAPR                      FTD +LEDLK++PR+LVSPS  SS   
Sbjct: 1   MDNKADHRAPRXXXXXXXXXXXXXXXXXXXXXAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  VSP-AAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG 106
            +P +AK +CLCSPTTHIGSFRCRHHR S G++RGGSVGSNLSDL RK +E +G
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHS-GMIRGGSVGSNLSDLTRKPTEIVG 113

[Close]

BLAST of Carg23345 vs. TrEMBL
Match: tr|W9SBP1|W9SBP1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.9e-14
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1   MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGS 60
           MD K + R+P+    ++++   K+   D +L +LK+   +L SP    +  K S + + +
Sbjct: 1   MDEKVEQRSPQKIKENNMNF--KLKIPDINLNELKKQTHLLASPRAQRAVTK-SSSTRWN 60

Query: 61  CLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRK 100
           CLCSPTTH GSFRCRHHR S  +LRGGSVGSNLS+L RK
Sbjct: 61  CLCSPTTHAGSFRCRHHRSSC-MLRGGSVGSNLSELARK 95

[Close]

BLAST of Carg23345 vs. TrEMBL
Match: tr|A0A1R3KIL8|A0A1R3KIL8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_07740 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 1   MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSP---SLHSSPQKVSP-A 60
           M  + +H+ P+   +     + ++   + +L+D+KR P V VSP   S +++  K+ P +
Sbjct: 1   MGEREEHKPPKINVK---GKNLEVSVGEINLDDIKRHPIVHVSPRGSSGNNNSTKLQPSS 60

Query: 61  AKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDL-DRKSSEF 104
           A+ +CLCSPTTH GSFRCRHHR S G+ RGGSVGSNLS L   KS +F
Sbjct: 61  ARWNCLCSPTTHAGSFRCRHHRSSGGMTRGGSVGSNLSLLASTKSHDF 105

[Close]

BLAST of Carg23345 vs. TrEMBL
Match: tr|A0A0A0L7C7|A0A0A0L7C7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 5   PDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCS 64
           P    P+ T  +     +K    + + +DLK++  +L+SP+  S   K S + K +CLCS
Sbjct: 3   PIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTK-SRSIKSNCLCS 62

Query: 65  PTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKS 101
           PTTHIGSFRCR H RS  I RGGSVGSNLSDL +KS
Sbjct: 63  PTTHIGSFRCRRH-RSTSISRGGSVGSNLSDLVQKS 96

[Close]

BLAST of Carg23345 vs. TrEMBL
Match: tr|A0A2K3P5S5|A0A2K3P5S5_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g007213 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 34  LKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNL 93
           LK+   +LVSP+ + +  + + + + +CLCSPTTH+GSFRCR HR SAG+ RGGSVGSNL
Sbjct: 41  LKKHSHMLVSPTSNKAEARKASSGRSNCLCSPTTHVGSFRCRLHRASAGLHRGGSVGSNL 100

Query: 94  SDLDRKS 101
           S+L  K+
Sbjct: 101 SELGNKA 107

The following BLAST results are available for this feature:

BLAST of Carg23345 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44385.1	3.1e-22	57.02	hypothetical protein Csa_7G278200 [Cucumis sativus]	[more]
XP_022143490.1	1.2e-13	56.96	uncharacterized protein LOC111013367 [Momordica charantia]	[more]
XP_010103953.1	1.2e-13	47.47	uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical p...	[more]
GAU13507.1	1.0e-12	56.06	hypothetical protein TSUD_128040 [Trifolium subterraneum]	[more]
KGN55991.1	1.7e-12	48.96	hypothetical protein Csa_3G045050 [Cucumis sativus]	[more]

BLAST of Carg23345 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13227.1	4.8e-09	43.04	serine-rich protein-related	[more]
AT5G55980.1	4.8e-09	51.61	serine-rich protein-related	[more]
AT5G20370.1	2.8e-04	50.00	serine-rich protein-related	[more]
AT1G67910.1	3.6e-04	80.95	unknown protein	[more]
AT5G25280.1	6.1e-04	31.94	serine-rich protein-related	[more]

BLAST of Carg23345 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23345 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3W3\|A0A0A0K3W3_CUCSA	2.1e-22	57.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1	[more]
tr\|W9SBP1\|W9SBP1_9ROSA	7.9e-14	47.47	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1	[more]
tr\|A0A1R3KIL8\|A0A1R3KIL8_9ROSI	1.1e-12	45.37	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_07740 PE=4 SV=1	[more]
tr\|A0A0A0L7C7\|A0A0A0L7C7_CUCSA	1.1e-12	48.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1	[more]
tr\|A0A2K3P5S5\|A0A2K3P5S5_TRIPR	1.5e-12	55.22	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g007213 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23345-RA	Carg23345-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR33132:SF29	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 39..102
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 39..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23345	Cla003331	Watermelon (97103) v1	carwmB0074
Carg23345	Csa7G278200	Cucumber (Chinese Long) v2	carcuB0085
Carg23345	MELO3C024968	Melon (DHL92) v3.5.1	carmeB0076
Carg23345	ClCG09G021530	Watermelon (Charleston Gray)	carwcgB0075
Carg23345	CSPI07G11920	Wild cucumber (PI 183967)	carcpiB0089
Carg23345	Cucsa.240730	Cucumber (Gy14) v1	carcgyB0087
Carg23345	CmoCh09G010300	Cucurbita moschata (Rifu)	carcmoB0106
Carg23345	CmoCh01G011020	Cucurbita moschata (Rifu)	carcmoB0107
Carg23345	Lsi02G018090	Bottle gourd (USVL1VR-Ls)	carlsiB067
Carg23345	Cp4.1LG06g08220	Cucurbita pepo (Zucchini)	carcpeB0111
Carg23345	CsGy7G011120	Cucumber (Gy14) v2	carcgybB0085
Carg23345	MELO3C024968.2	Melon (DHL92) v3.6.1	carmedB0077
Carg23345	CsaV3_7G023850	Cucumber (Chinese Long) v3	carcucB0092
Carg23345	Cla97C09G182940	Watermelon (97103) v2	carwmbB0073
Carg23345	Bhi09G001507	Wax gourd	carwgoB0088

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23345	Carg24744	Silver-seed gourd	carcarB088

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23345	Cucurbita maxima (Rimu)	carcmaB0098
Carg23345	Cucurbita maxima (Rimu)	carcmaB0099
Carg23345	Cucurbita pepo (Zucchini)	carcpeB0110