CSPI07G11920 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G11920
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSerine-rich protein-related, putative
LocationChr7 : 10169291 .. 10170018 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGCAAAGAGCAAAAAATGAGGAGTTGAGTACGAATGTCAAAATTTGCATACATTTCTCAAACATCTCCTTTCTCCCCATATTAATAATATTTTTGGTTTCAAGCCCTAATAACTCCTCCATCTTAACTTCTAACTAAAATCTAATTTATTATCCCCCCAATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCCAACGATAGAAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGACTTCACTTGCCTTGCCTTTTTCCTTCTCTTTTCGAGGCGGCTTTGTTTTGTTTCTTTGTTCCTTTGTCTTCCTACTTCCTCTTCACTTGGTGATGCAAAAATTTGGGGAATGAAGGGAGGATTTCGTTTTTTATTTGTTTCTTTTTCTCATTACGTTGTTCAATCTCTGTATTTGTAAAGGAAGATGGTGATGATTATCTTTTTCTTTTCCTACTTTTATGATTC

mRNA sequence

ATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCCAACGATAGAAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGA

Coding sequence (CDS)

ATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCCAACGATAGAAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGA
Homology
[Close]
BLAST of CSPI07G11920 vs. TrEMBL
Match: A0A0A0K3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.8e-56
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 1 

Query: 1   MDNKADHRAPRPNDR----NNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MDNKADHRAPRPNDR    NNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 114
           RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]
BLAST of CSPI07G11920 vs. TrEMBL
Match: W9SBP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 56/110 (50.91%), Postives = 68/110 (61.82%), Query Frame = 1 

Query: 1   MDNKADHRAPRPNDRNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPS 60
           MD K + R+P+    NN N       K+   D+NL +LK+   +L SP   +  A    S
Sbjct: 1   MDEKVEQRSPQKIKENNMNF------KLKIPDINLNELKKQTHLLASPR--AQRAVTKSS 60

Query: 61  SAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGS 111
           S + NCLCSPTTH GSFRCRHHR S M+RGGSVGSNLS+L RKP  I  S
Sbjct: 61  STRWNCLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAISDS 102

[Close]
BLAST of CSPI07G11920 vs. TrEMBL
Match: A0A0A0L7C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-14
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 27  KMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSG 86
           K A  +   +DLK+N  +L+SP+  S +      S K+NCLCSPTTHIGSFRCR HR + 
Sbjct: 21  KSAMVETEFDDLKKNANLLMSPTALSRMTKSR--SIKSNCLCSPTTHIGSFRCRRHRSTS 80

Query: 87  MIRGGSVGSNLSDLTRK 104
           + RGGSVGSNLSDL +K
Sbjct: 81  ISRGGSVGSNLSDLVQK 95

[Close]
BLAST of CSPI07G11920 vs. TrEMBL
Match: A0A072UXD4_MEDTR (PGPS/D10 protein, putative OS=Medicago truncatula GN=MTR_3g461010 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 39  KQNPRILVSPSP---PSSIAA--RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSV 98
           K+N  +LVSP+    P+S+ +  R  SS + NCLCSPTTH GSFRCRHHR SGMIRGGSV
Sbjct: 26  KKNSHMLVSPTSLASPTSLKSNPRKSSSGRWNCLCSPTTHAGSFRCRHHRSSGMIRGGSV 85

Query: 99  GSNLSDLTRKPTEIVGS 111
           GSNL+ L  K   I  S
Sbjct: 86  GSNLAQLGNKAGAISDS 102

[Close]
BLAST of CSPI07G11920 vs. TrEMBL
Match: A0A0B2PP39_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_039434 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.6e-13
Identity = 44/84 (52.38%), Postives = 52/84 (61.90%), Query Frame = 1 

Query: 35  LEDLKQNPRILVSP--------SPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSG 94
           +E +K+N  +LVSP        SP S    R  S+ + NCLCSPTTH GSFRCRHHR SG
Sbjct: 31  VETIKKNSHMLVSPTTSQNSLMSPTSQTITRNNSNGRLNCLCSPTTHAGSFRCRHHRSSG 90

Query: 95  MIRGGSVGSNLSDLTRKPTEIVGS 111
             RG SVGSNL++L  K   I  S
Sbjct: 91  FRRGKSVGSNLAELGSKAGSISDS 114

[Close]
BLAST of CSPI07G11920 vs. TAIR10
Match: AT5G55980.1 (AT5G55980.1 serine-rich protein-related)

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-10
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 

Query: 61  SAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDL 101
           S + NCLCSPTTH GSFRCR+HR   + R GS+GSNL+ L
Sbjct: 59  STRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

[Close]
BLAST of CSPI07G11920 vs. TAIR10
Match: AT3G13227.1 (AT3G13227.1 serine-rich protein-related)

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-09
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1 

Query: 32  DLNLEDLKQNPRILVSP-------SPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRH 91
           D++ +D+K+     +SP           S+     SS + NCLC+PTTH GSFRCR+HR 
Sbjct: 24  DVSQDDIKRQEAYNMSPRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRR 83

Query: 92  S---GMIRGGSVGSNLSDL 101
           +   GM RG SV SNLS L
Sbjct: 84  NAGLGMSRGTSVPSNLSML 102

[Close]
BLAST of CSPI07G11920 vs. TAIR10
Match: AT1G67910.1 (AT1G67910.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 8.2e-07
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 1 

Query: 56  ARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSV-GSNLSDLTRKPTE 107
           +R  S  K NCLCSPTTH GSFRCR HR   + R  S+  ++L D   KP +
Sbjct: 34  SRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPAD 85

[Close]
BLAST of CSPI07G11920 vs. NCBI nr
Match: gi|700189152|gb|KGN44385.1| (hypothetical protein Csa_7G278200 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 4.1e-56
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 1 

Query: 1   MDNKADHRAPRPNDR----NNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MDNKADHRAPRPNDR    NNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 114
           RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]
BLAST of CSPI07G11920 vs. NCBI nr
Match: gi|659126143|ref|XP_008463032.1| (PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 3.3e-42
Identity = 93/122 (76.23%), Postives = 103/122 (84.43%), Query Frame = 1 

Query: 1   MDNKADHRAPRPNDRN--------NHNHNHHHHHKMAFTDLNLEDLKQNPR-ILVSPSPP 60
           MDNKAD +APRPNDRN        NH+HNHHH+H+MA T+LNL DLK N   +LVSPSPP
Sbjct: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60

Query: 61  SSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSF 114
           S+ A +TPSSAKANCLCSPTTHIGSFRCRHHRH+GMIRGGSVGSNLSDL RKPTEI+G F
Sbjct: 61  ST-ATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPF 120

[Close]
BLAST of CSPI07G11920 vs. NCBI nr
Match: gi|703127862|ref|XP_010103953.1| (hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-17
Identity = 56/110 (50.91%), Postives = 68/110 (61.82%), Query Frame = 1 

Query: 1   MDNKADHRAPRPNDRNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPS 60
           MD K + R+P+    NN N       K+   D+NL +LK+   +L SP   +  A    S
Sbjct: 1   MDEKVEQRSPQKIKENNMNF------KLKIPDINLNELKKQTHLLASPR--AQRAVTKSS 60

Query: 61  SAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGS 111
           S + NCLCSPTTH GSFRCRHHR S M+RGGSVGSNLS+L RKP  I  S
Sbjct: 61  STRWNCLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAISDS 102

[Close]
BLAST of CSPI07G11920 vs. NCBI nr
Match: gi|700200858|gb|KGN55991.1| (hypothetical protein Csa_3G045050 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-14
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 27  KMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSG 86
           K A  +   +DLK+N  +L+SP+  S +      S K+NCLCSPTTHIGSFRCR HR + 
Sbjct: 21  KSAMVETEFDDLKKNANLLMSPTALSRMTKSR--SIKSNCLCSPTTHIGSFRCRRHRSTS 80

Query: 87  MIRGGSVGSNLSDLTRK 104
           + RGGSVGSNLSDL +K
Sbjct: 81  ISRGGSVGSNLSDLVQK 95

[Close]
BLAST of CSPI07G11920 vs. NCBI nr
Match: gi|922379672|ref|XP_013460070.1| (PGPS/D10 protein, putative [Medicago truncatula])

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 39  KQNPRILVSPSP---PSSIAA--RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSV 98
           K+N  +LVSP+    P+S+ +  R  SS + NCLCSPTTH GSFRCRHHR SGMIRGGSV
Sbjct: 26  KKNSHMLVSPTSLASPTSLKSNPRKSSSGRWNCLCSPTTHAGSFRCRHHRSSGMIRGGSV 85

Query: 99  GSNLSDLTRKPTEIVGS 111
           GSNL+ L  K   I  S
Sbjct: 86  GSNLAQLGNKAGAISDS 102

The following BLAST results are available for this feature:
BLAST of CSPI07G11920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G11920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3W3_CUCSA2.8e-5696.58Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278200 PE=4 SV=1[more]
W9SBP1_9ROSA1.5e-1750.91Uncharacterized protein OS=Morus notabilis GN=L484_020205 PE=4 SV=1[more]
A0A0A0L7C7_CUCSA2.7e-1455.84Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045050 PE=4 SV=1[more]
A0A072UXD4_MEDTR1.7e-1359.74PGPS/D10 protein, putative OS=Medicago truncatula GN=MTR_3g461010 PE=4 SV=1[more]
A0A0B2PP39_GLYSO8.6e-1352.38Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_039434 PE=4 SV=1[more]
BLAST of CSPI07G11920 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G55980.16.1e-1065.00 serine-rich protein-related[more]
AT3G13227.13.0e-0944.30 serine-rich protein-related[more]
AT1G67910.18.2e-0750.00 unknown protein[more]
BLAST of CSPI07G11920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189152|gb|KGN44385.1|4.1e-5696.58hypothetical protein Csa_7G278200 [Cucumis sativus][more]
gi|659126143|ref|XP_008463032.1|3.3e-4276.23PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A [Cucumi... [more]
gi|703127862|ref|XP_010103953.1|2.2e-1750.91hypothetical protein L484_020205 [Morus notabilis][more]
gi|700200858|gb|KGN55991.1|3.8e-1455.84hypothetical protein Csa_3G045050 [Cucumis sativus][more]
gi|922379672|ref|XP_013460070.1|2.5e-1359.74PGPS/D10 protein, putative [Medicago truncatula][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009693 ethylene biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G11920.1CSPI07G11920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 33..100
score: 2.4
NoneNo IPR availablePANTHERPTHR33132:SF9SUBFAMILY NOT NAMEDcoord: 33..100
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G11920Cla003331Watermelon (97103) v1cpiwmB591
CSPI07G11920Csa7G278200Cucumber (Chinese Long) v2cpicuB354
CSPI07G11920MELO3C024968Melon (DHL92) v3.5.1cpimeB550
CSPI07G11920ClCG09G021530Watermelon (Charleston Gray)cpiwcgB559
CSPI07G11920Lsi02G018090Bottle gourd (USVL1VR-Ls)cpilsiB520
CSPI07G11920MELO3C024968.2Melon (DHL92) v3.6.1cpimedB515
CSPI07G11920CsaV3_7G023850Cucumber (Chinese Long) v3cpicucB414
CSPI07G11920Cla97C09G182940Watermelon (97103) v2cpiwmbB602
CSPI07G11920Bhi09G001507Wax gourdcpiwgoB723
CSPI07G11920Cucsa.240730Cucumber (Gy14) v1cgycpiB364
CSPI07G11920CmoCh09G010300Cucurbita moschata (Rifu)cmocpiB037
CSPI07G11920CmoCh01G011020Cucurbita moschata (Rifu)cmocpiB487
CSPI07G11920Cp4.1LG06g08220Cucurbita pepo (Zucchini)cpecpiB803
CSPI07G11920CsGy7G011120Cucumber (Gy14) v2cgybcpiB331
CSPI07G11920Carg24744Silver-seed gourdcarcpiB0470
CSPI07G11920Carg23345Silver-seed gourdcarcpiB0089
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G11920Melon (DHL92) v3.5.1cpimeB548
CSPI07G11920Watermelon (97103) v1cpiwmB582
CSPI07G11920Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G11920Bottle gourd (USVL1VR-Ls)cpilsiB528
CSPI07G11920Melon (DHL92) v3.6.1cpimedB534
CSPI07G11920Wax gourdcpiwgoB718
CSPI07G11920Cucurbita maxima (Rimu)cmacpiB039
CSPI07G11920Cucurbita maxima (Rimu)cmacpiB047
CSPI07G11920Cucurbita maxima (Rimu)cmacpiB498
CSPI07G11920Cucurbita moschata (Rifu)cmocpiB029