Carg24744 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24744
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Serine-rich protein-related, putative
Location	Cucurbita_argyrosperma_scaffold_259 : 148293 .. 148619 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

mRNA sequence

ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

Coding sequence (CDS)

ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

Protein sequence

MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP

Homology

[Close]

BLAST of Carg24744 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_7G278200 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 2.9e-23
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MDHKPDHRAPR--------PIDRNNPNHHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60
           MD+K DHRAPR                      FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDNKADHRAPRXXXXXXXXXXXXXXXXXXXXXAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 109
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]

BLAST of Carg24744 vs. NCBI nr
Match: XP_010103953.1 (uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 1  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
          MD K + R+P+ I  NN N   K +  D +L + K+ T+LLA SP    A    SS + +
Sbjct: 1  MDEKVEQRSPQKIKENNMN--FKLKIPDINLNELKKQTHLLA-SPRAQRAVTKSSSTRWN 60

Query: 61 CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK 99
          CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Sbjct: 61 CLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARK 95

[Close]

BLAST of Carg24744 vs. NCBI nr
Match: PON86349.1 (hypothetical protein TorRG33x02_179150 [Trema orientalis])

HSP 1 Score: 86.3 bits (212), Expect = 7.1e-14
Identity = 52/101 (51.49%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKA--PSSAK 60
           MD K   R+P      N    +K    + +LE+ K+ T++L  SP R  AP     SS +
Sbjct: 1   MDDKVVQRSPSSPKMKN----YKLNIPEINLEELKKHTHILVVSPRRVQAPAVTKSSSTR 60

Query: 61  ASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
            +CLCSPTTH GSFRCRHHR +GM RG SVGSNLSELA KS
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGGSVGSNLSELARKS 97

[Close]

BLAST of Carg24744 vs. NCBI nr
Match: PON32972.1 (hypothetical protein PanWU01x14_356530 [Parasponia andersonii])

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-13
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKA--PSSAK 60
           MD K   R+P      N    +K    + +LE+ K+ T++L  SP    AP     SS +
Sbjct: 1   MDEKVVQRSPSSQKMKN----YKLNIPEINLEELKKHTHILVVSPRGVQAPAVTKSSSTR 60

Query: 61  ASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
            +CLCSPTTH GSFRCRHHR +GM RG SVGSNLSELA KS
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGSSVGSNLSELARKS 97

[Close]

BLAST of Carg24744 vs. NCBI nr
Match: XP_022143490.1 (uncharacterized protein LOC111013367 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-12
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 23  KTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGM 82
           K+   + DL++ K+ ++ L  SP+         S K++CLCSPTTHIGSFRCR HR T +
Sbjct: 21  KSALPELDLDELKKSSHNLVMSPTALSRMSKSPSTKSNCLCSPTTHIGSFRCRRHRSTAI 80

Query: 83  LRGRSVGSNLSELAHKSTDLMTS 106
            RG SVGSNLS+LA KS  +  S
Sbjct: 81  SRGGSVGSNLSDLAQKSAAMEDS 103

[Close]

BLAST of Carg24744 vs. TAIR10
Match: AT3G13227.1 (serine-rich protein-related)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 55  SSAKASCLCSPTTHIGSFRCRHHRHT---GMLRGRSVGSNLSELA 97
           SS + +CLC+PTTH GSFRCR+HR     GM RG SV SNLS LA
Sbjct: 59  SSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

[Close]

BLAST of Carg24744 vs. TAIR10
Match: AT5G55980.1 (serine-rich protein-related)

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 56 SAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSEL 96
          S + +CLCSPTTH GSFRCR+HR   + R  S+GSNL+ L
Sbjct: 59 STRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

[Close]

BLAST of Carg24744 vs. TAIR10
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 45.1 bits (105), Expect = 3.3e-05
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 46 SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSV 89
          SR L+ +  S  K +CLCSPTTH GSFRCR HR   + R +S+
Sbjct: 30 SRGLS-RQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

[Close]

BLAST of Carg24744 vs. TAIR10
Match: AT1G24577.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 7.3e-05
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 55 SSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNL 93
          S  K  C+CSPTTH GSF+C+ HR   + R +SV +N+
Sbjct: 26 SITKTICICSPTTHPGSFKCKLHRTPSLQRNKSVETNI 63

[Close]

BLAST of Carg24744 vs. TrEMBL
Match: tr|A0A0A0K3W3|A0A0A0K3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MDHKPDHRAPR--------PIDRNNPNHHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60
           MD+K DHRAPR                      FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDNKADHRAPRXXXXXXXXXXXXXXXXXXXXXAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 109
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]

BLAST of Carg24744 vs. TrEMBL
Match: tr|W9SBP1|W9SBP1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 1  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
          MD K + R+P+ I  NN N   K +  D +L + K+ T+LLA SP    A    SS + +
Sbjct: 1  MDEKVEQRSPQKIKENNMN--FKLKIPDINLNELKKQTHLLA-SPRAQRAVTKSSSTRWN 60

Query: 61 CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK 99
          CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Sbjct: 61 CLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARK 95

[Close]

BLAST of Carg24744 vs. TrEMBL
Match: tr|A0A2P5ELH4|A0A2P5ELH4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_179150 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 52/101 (51.49%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKA--PSSAK 60
           MD K   R+P      N    +K    + +LE+ K+ T++L  SP R  AP     SS +
Sbjct: 1   MDDKVVQRSPSSPKMKN----YKLNIPEINLEELKKHTHILVVSPRRVQAPAVTKSSSTR 60

Query: 61  ASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
            +CLCSPTTH GSFRCRHHR +GM RG SVGSNLSELA KS
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGGSVGSNLSELARKS 97

[Close]

BLAST of Carg24744 vs. TrEMBL
Match: tr|A0A2P5A8U7|A0A2P5A8U7_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356530 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKA--PSSAK 60
           MD K   R+P      N    +K    + +LE+ K+ T++L  SP    AP     SS +
Sbjct: 1   MDEKVVQRSPSSQKMKN----YKLNIPEINLEELKKHTHILVVSPRGVQAPAVTKSSSTR 60

Query: 61  ASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
            +CLCSPTTH GSFRCRHHR +GM RG SVGSNLSELA KS
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGSSVGSNLSELARKS 97

[Close]

BLAST of Carg24744 vs. TrEMBL
Match: tr|A0A0A0L7C7|A0A0A0L7C7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 5   PDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCS 64
           P    P+    N      K+   + + +D K+  NLL S  + S   K+  S K++CLCS
Sbjct: 3   PIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKS-RSIKSNCLCS 62

Query: 65  PTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
           PTTHIGSFRCR HR T + RG SVGSNLS+L  KS
Sbjct: 63  PTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKS 96

The following BLAST results are available for this feature:

BLAST of Carg24744 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44385.1	2.9e-23	55.56	hypothetical protein Csa_7G278200 [Cucumis sativus]	[more]
XP_010103953.1	1.7e-15	55.10	uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical p...	[more]
PON86349.1	7.1e-14	51.49	hypothetical protein TorRG33x02_179150 [Trema orientalis]	[more]
PON32972.1	2.7e-13	50.50	hypothetical protein PanWU01x14_356530 [Parasponia andersonii]	[more]
XP_022143490.1	6.6e-12	49.40	uncharacterized protein LOC111013367 [Momordica charantia]	[more]

BLAST of Carg24744 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13227.1	1.9e-08	64.44	serine-rich protein-related	[more]
AT5G55980.1	4.1e-08	60.00	serine-rich protein-related	[more]
AT1G67910.1	3.3e-05	53.49	unknown protein	[more]
AT1G24577.1	7.3e-05	50.00	unknown protein	[more]

BLAST of Carg24744 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24744 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3W3\|A0A0A0K3W3_CUCSA	1.9e-23	55.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1	[more]
tr\|W9SBP1\|W9SBP1_9ROSA	1.1e-15	55.10	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1	[more]
tr\|A0A2P5ELH4\|A0A2P5ELH4_9ROSA	4.7e-14	51.49	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_179150 PE=4 S...	[more]
tr\|A0A2P5A8U7\|A0A2P5A8U7_PARAD	1.8e-13	50.50	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356530 PE...	[more]
tr\|A0A0A0L7C7\|A0A0A0L7C7_CUCSA	1.1e-10	46.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24744-RA	Carg24744-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 38..100
None	No IPR available	PANTHER	PTHR33132:SF29	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 38..100

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24744	Cla003331	Watermelon (97103) v1	carwmB0428
Carg24744	Csa7G278200	Cucumber (Chinese Long) v2	carcuB0465
Carg24744	MELO3C024968	Melon (DHL92) v3.5.1	carmeB0440
Carg24744	ClCG09G021530	Watermelon (Charleston Gray)	carwcgB0423
Carg24744	CSPI07G11920	Wild cucumber (PI 183967)	carcpiB0470
Carg24744	Cucsa.240730	Cucumber (Gy14) v1	carcgyB0498
Carg24744	CmoCh01G011020	Cucurbita moschata (Rifu)	carcmoB0587
Carg24744	Lsi02G018090	Bottle gourd (USVL1VR-Ls)	carlsiB391
Carg24744	CsGy7G011120	Cucumber (Gy14) v2	carcgybB0441
Carg24744	MELO3C024968.2	Melon (DHL92) v3.6.1	carmedB0441
Carg24744	CsaV3_7G023850	Cucumber (Chinese Long) v3	carcucB0465
Carg24744	Cla97C09G182940	Watermelon (97103) v2	carwmbB0455
Carg24744	Bhi09G001507	Wax gourd	carwgoB0519

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24744	Carg23345	Silver-seed gourd	carcarB088

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24744	Cucurbita maxima (Rimu)	carcmaB0601
Carg24744	Cucurbita maxima (Rimu)	carcmaB0602
Carg24744	Cucurbita moschata (Rifu)	carcmoB0586
Carg24744	Cucurbita pepo (Zucchini)	carcpeB0607
Carg24744	Cucurbita pepo (Zucchini)	carcpeB0608