Carg24744-RA (mRNA) Silver-seed gourd

Overview
NameCarg24744-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSerine-rich protein-related, putative
LocationCucurbita_argyrosperma_scaffold_259 : 148293 .. 148619 (-)
Sequence length327
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

mRNA sequence

ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

Coding sequence (CDS)

ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

Protein sequence

MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP
Homology
[Close]
BLAST of Carg24744-RA vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_7G278200 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 2.9e-23
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 0 

Query: 1   MDHKPDHRAPR--------PIDRNNPNHHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60
           MD+K DHRAPR                      FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDNKADHRAPRXXXXXXXXXXXXXXXXXXXXXAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 109
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]
BLAST of Carg24744-RA vs. NCBI nr
Match: XP_010103953.1 (uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0 

Query: 1  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
          MD K + R+P+ I  NN N   K +  D +L + K+ T+LLA SP    A    SS + +
Sbjct: 1  MDEKVEQRSPQKIKENNMN--FKLKIPDINLNELKKQTHLLA-SPRAQRAVTKSSSTRWN 60

Query: 61 CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK 99
          CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Sbjct: 61 CLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARK 95

[Close]
BLAST of Carg24744-RA vs. NCBI nr
Match: PON86349.1 (hypothetical protein TorRG33x02_179150 [Trema orientalis])

HSP 1 Score: 86.3 bits (212), Expect = 7.1e-14
Identity = 52/101 (51.49%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKA--PSSAK 60
           MD K   R+P      N    +K    + +LE+ K+ T++L  SP R  AP     SS +
Sbjct: 1   MDDKVVQRSPSSPKMKN----YKLNIPEINLEELKKHTHILVVSPRRVQAPAVTKSSSTR 60

Query: 61  ASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
            +CLCSPTTH GSFRCRHHR +GM RG SVGSNLSELA KS
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGGSVGSNLSELARKS 97

[Close]
BLAST of Carg24744-RA vs. NCBI nr
Match: PON32972.1 (hypothetical protein PanWU01x14_356530 [Parasponia andersonii])

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-13
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0 

Query: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKA--PSSAK 60
           MD K   R+P      N    +K    + +LE+ K+ T++L  SP    AP     SS +
Sbjct: 1   MDEKVVQRSPSSQKMKN----YKLNIPEINLEELKKHTHILVVSPRGVQAPAVTKSSSTR 60

Query: 61  ASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
            +CLCSPTTH GSFRCRHHR +GM RG SVGSNLSELA KS
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGSSVGSNLSELARKS 97

[Close]
BLAST of Carg24744-RA vs. NCBI nr
Match: XP_022143490.1 (uncharacterized protein LOC111013367 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-12
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 23  KTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGM 82
           K+   + DL++ K+ ++ L  SP+         S K++CLCSPTTHIGSFRCR HR T +
Sbjct: 21  KSALPELDLDELKKSSHNLVMSPTALSRMSKSPSTKSNCLCSPTTHIGSFRCRRHRSTAI 80

Query: 83  LRGRSVGSNLSELAHKSTDLMTS 106
            RG SVGSNLS+LA KS  +  S
Sbjct: 81  SRGGSVGSNLSDLAQKSAAMEDS 103

[Close]
BLAST of Carg24744-RA vs. TAIR10
Match: AT3G13227.1 (serine-rich protein-related)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 55  SSAKASCLCSPTTHIGSFRCRHHRHT---GMLRGRSVGSNLSELA 97
           SS + +CLC+PTTH GSFRCR+HR     GM RG SV SNLS LA
Sbjct: 59  SSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

[Close]
BLAST of Carg24744-RA vs. TAIR10
Match: AT5G55980.1 (serine-rich protein-related)

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 56 SAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSEL 96
          S + +CLCSPTTH GSFRCR+HR   + R  S+GSNL+ L
Sbjct: 59 STRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

[Close]
BLAST of Carg24744-RA vs. TAIR10
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 45.1 bits (105), Expect = 3.3e-05
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0 

Query: 46 SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSV 89
          SR L+ +  S  K +CLCSPTTH GSFRCR HR   + R +S+
Sbjct: 30 SRGLS-RQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

[Close]
BLAST of Carg24744-RA vs. TAIR10
Match: AT1G24577.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 7.3e-05
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 0 

Query: 55 SSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNL 93
          S  K  C+CSPTTH GSF+C+ HR   + R +SV +N+
Sbjct: 26 SITKTICICSPTTHPGSFKCKLHRTPSLQRNKSVETNI 63

[Close]
BLAST of Carg24744-RA vs. TrEMBL
Match: tr|A0A0A0K3W3|A0A0A0K3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 0 

Query: 1   MDHKPDHRAPR--------PIDRNNPNHHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60
           MD+K DHRAPR                      FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDNKADHRAPRXXXXXXXXXXXXXXXXXXXXXAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 109
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]
BLAST of Carg24744-RA vs. TrEMBL
Match: tr|W9SBP1|W9SBP1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0 

Query: 1  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
          MD K + R+P+ I  NN N   K +  D +L + K+ T+LLA SP    A    SS + +
Sbjct: 1  MDEKVEQRSPQKIKENNMN--FKLKIPDINLNELKKQTHLLA-SPRAQRAVTKSSSTRWN 60

Query: 61 CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK 99
          CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Sbjct: 61 CLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARK 95

[Close]
BLAST of Carg24744-RA vs. TrEMBL
Match: tr|A0A2P5ELH4|A0A2P5ELH4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_179150 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 52/101 (51.49%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKA--PSSAK 60
           MD K   R+P      N    +K    + +LE+ K+ T++L  SP R  AP     SS +
Sbjct: 1   MDDKVVQRSPSSPKMKN----YKLNIPEINLEELKKHTHILVVSPRRVQAPAVTKSSSTR 60

Query: 61  ASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
            +CLCSPTTH GSFRCRHHR +GM RG SVGSNLSELA KS
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGGSVGSNLSELARKS 97

[Close]
BLAST of Carg24744-RA vs. TrEMBL
Match: tr|A0A2P5A8U7|A0A2P5A8U7_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356530 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0 

Query: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKA--PSSAK 60
           MD K   R+P      N    +K    + +LE+ K+ T++L  SP    AP     SS +
Sbjct: 1   MDEKVVQRSPSSQKMKN----YKLNIPEINLEELKKHTHILVVSPRGVQAPAVTKSSSTR 60

Query: 61  ASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
            +CLCSPTTH GSFRCRHHR +GM RG SVGSNLSELA KS
Sbjct: 61  WNCLCSPTTHAGSFRCRHHRSSGMNRGSSVGSNLSELARKS 97

[Close]
BLAST of Carg24744-RA vs. TrEMBL
Match: tr|A0A0A0L7C7|A0A0A0L7C7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 0 

Query: 5   PDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCS 64
           P    P+    N      K+   + + +D K+  NLL S  + S   K+  S K++CLCS
Sbjct: 3   PIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKS-RSIKSNCLCS 62

Query: 65  PTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
           PTTHIGSFRCR HR T + RG SVGSNLS+L  KS
Sbjct: 63  PTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKS 96

The following BLAST results are available for this feature:
BLAST of Carg24744-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44385.12.9e-2355.56hypothetical protein Csa_7G278200 [Cucumis sativus][more]
XP_010103953.11.7e-1555.10uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical p... [more]
PON86349.17.1e-1451.49hypothetical protein TorRG33x02_179150 [Trema orientalis][more]
PON32972.12.7e-1350.50hypothetical protein PanWU01x14_356530 [Parasponia andersonii][more]
XP_022143490.16.6e-1249.40uncharacterized protein LOC111013367 [Momordica charantia][more]
BLAST of Carg24744-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13227.11.9e-0864.44serine-rich protein-related[more]
AT5G55980.14.1e-0860.00serine-rich protein-related[more]
AT1G67910.13.3e-0553.49unknown protein[more]
AT1G24577.17.3e-0550.00unknown protein[more]
BLAST of Carg24744-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg24744-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3W3|A0A0A0K3W3_CUCSA1.9e-2355.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1[more]
tr|W9SBP1|W9SBP1_9ROSA1.1e-1555.10Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1[more]
tr|A0A2P5ELH4|A0A2P5ELH4_9ROSA4.7e-1451.49Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_179150 PE=4 S... [more]
tr|A0A2P5A8U7|A0A2P5A8U7_PARAD1.8e-1350.50Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356530 PE... [more]
tr|A0A0A0L7C7|A0A0A0L7C7_CUCSA1.1e-1046.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg24744Carg24744gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24744-RA.CDS.1Carg24744-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24744-RA.exon.1Carg24744-RA.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg24744-RACarg24744-RA-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 38..100
NoneNo IPR availablePANTHERPTHR33132:SF29SERINE-RICH PROTEIN-LIKE PROTEINcoord: 38..100