Csa7G278200 (gene) Cucumber (Chinese Long) v2

NameCsa7G278200
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPGPS/D10
LocationChr7 : 9798101 .. 9798656 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGCAAAGAGCAAAAAATGAGGAGTTGAGTACGAATGTCAAAATTTGCATACATTTCTCAAACATCTCCTTTCTCCCCATATTAATAATATTTTTGGTTTCAAGCCCTAATAACTCCTCCATCTTAACTTCTAACTAAAATCTAATTTATTATCCCCCCCAATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCAAACGATAGAAACAATCACAATAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGACTTCACTTGCCTTGCCTTTTTCCTTCTCTTTTCGAGGCGG

mRNA sequence

ATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCAAACGATAGAAACAATCACAATAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGA

Coding sequence (CDS)

ATGGATAATAAAGCAGATCACAGAGCTCCAAGGCCAAACGATAGAAACAATCACAATAACAATCACAATCACAATCACCATCACCATCACAAAATGGCTTTCACAGACTTAAATTTAGAAGACCTTAAGCAGAATCCTCGCATCCTCGTCTCTCCTTCCCCACCATCCTCCATCGCCGCCAGGACTCCCTCCTCTGCTAAAGCCAATTGTCTCTGTTCTCCAACCACTCACATTGGCTCCTTCCGTTGCCGGCACCACCGGCATTCCGGTATGATCCGCGGCGGCTCCGTTGGCTCTAATCTCTCCGATTTGACCCGTAAACCTACCGAAATTGTGGGATCTTTTTCGCCTTGA

Protein sequence

MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP*
BLAST of Csa7G278200 vs. TrEMBL
Match: A0A0A0K3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 7.7e-65
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1

Query: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 118
           RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

BLAST of Csa7G278200 vs. TrEMBL
Match: W9SBP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 55/114 (48.25%), Postives = 68/114 (59.65%), Query Frame = 1

Query: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MD K + R+P+    NN N           K+   D+NL +LK+   +L SP    ++  
Sbjct: 1   MDEKVEQRSPQKIKENNMN----------FKLKIPDINLNELKKQTHLLASPRAQRAVTK 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGS 115
              SS + NCLCSPTTH GSFRCRHHR S M+RGGSVGSNLS+L RKP  I  S
Sbjct: 61  S--SSTRWNCLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAISDS 102

BLAST of Csa7G278200 vs. TrEMBL
Match: A0A0A0L7C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.3e-15
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1

Query: 31  KMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSG 90
           K A  +   +DLK+N  +L+SP+  S +      S K+NCLCSPTTHIGSFRCR HR + 
Sbjct: 21  KSAMVETEFDDLKKNANLLMSPTALSRMTKSR--SIKSNCLCSPTTHIGSFRCRRHRSTS 80

Query: 91  MIRGGSVGSNLSDLTRK 108
           + RGGSVGSNLSDL +K
Sbjct: 81  ISRGGSVGSNLSDLVQK 95

BLAST of Csa7G278200 vs. TrEMBL
Match: A0A072UXD4_MEDTR (PGPS/D10 protein, putative OS=Medicago truncatula GN=MTR_3g461010 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1

Query: 43  KQNPRILVSPSP---PSSIAA--RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSV 102
           K+N  +LVSP+    P+S+ +  R  SS + NCLCSPTTH GSFRCRHHR SGMIRGGSV
Sbjct: 26  KKNSHMLVSPTSLASPTSLKSNPRKSSSGRWNCLCSPTTHAGSFRCRHHRSSGMIRGGSV 85

Query: 103 GSNLSDLTRKPTEIVGS 115
           GSNL+ L  K   I  S
Sbjct: 86  GSNLAQLGNKAGAISDS 102

BLAST of Csa7G278200 vs. TrEMBL
Match: A0A0B2PP39_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_039434 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 44/84 (52.38%), Postives = 52/84 (61.90%), Query Frame = 1

Query: 39  LEDLKQNPRILVSP--------SPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSG 98
           +E +K+N  +LVSP        SP S    R  S+ + NCLCSPTTH GSFRCRHHR SG
Sbjct: 31  VETIKKNSHMLVSPTTSQNSLMSPTSQTITRNNSNGRLNCLCSPTTHAGSFRCRHHRSSG 90

Query: 99  MIRGGSVGSNLSDLTRKPTEIVGS 115
             RG SVGSNL++L  K   I  S
Sbjct: 91  FRRGKSVGSNLAELGSKAGSISDS 114

BLAST of Csa7G278200 vs. TAIR10
Match: AT5G55980.1 (AT5G55980.1 serine-rich protein-related)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-10
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query: 65  SAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDL 105
           S + NCLCSPTTH GSFRCR+HR   + R GS+GSNL+ L
Sbjct: 59  STRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

BLAST of Csa7G278200 vs. TAIR10
Match: AT3G13227.1 (AT3G13227.1 serine-rich protein-related)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-10
Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1

Query: 36  DLNLEDLKQNPRILVSP-------SPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRH 95
           D++ +D+K+     +SP           S+     SS + NCLC+PTTH GSFRCR+HR 
Sbjct: 24  DVSQDDIKRQEAYNMSPRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRR 83

Query: 96  S---GMIRGGSVGSNLSDL 105
           +   GM RG SV SNLS L
Sbjct: 84  NAGLGMSRGTSVPSNLSML 102

BLAST of Csa7G278200 vs. TAIR10
Match: AT5G20370.1 (AT5G20370.1 serine-rich protein-related)

HSP 1 Score: 55.1 bits (131), Expect = 3.5e-08
Identity = 29/78 (37.18%), Postives = 36/78 (46.15%), Query Frame = 1

Query: 10 PRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKAN 69
          P  + +  HNN+H+H+          +LNL     +P    S   PS +   +    K  
Sbjct: 14 PLSSSQRLHNNHHHHHRQRSPSPCNKNLNLRLKFYSPG---SIPKPSVVTVSSNHQTKRK 73

Query: 70 CLCSPTTHIGSFRCRHHR 88
          CLCSPTTH GSFRC  HR
Sbjct: 74 CLCSPTTHPGSFRCSFHR 88

BLAST of Csa7G278200 vs. TAIR10
Match: AT1G67910.1 (AT1G67910.1 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.8e-07
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1

Query: 60  ARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSV-GSNLSDLTRKPTE 111
           +R  S  K NCLCSPTTH GSFRCR HR   + R  S+  ++L D   KP +
Sbjct: 34  SRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPAD 85

BLAST of Csa7G278200 vs. TAIR10
Match: AT5G25280.1 (AT5G25280.1 serine-rich protein-related)

HSP 1 Score: 51.2 bits (121), Expect = 5.0e-07
Identity = 31/95 (32.63%), Postives = 48/95 (50.53%), Query Frame = 1

Query: 20  NNHNHNHHHHHKMAF-TDLNL---EDLKQNPRILV-----SPSPPSSIAARTPSS----- 79
           ++HN N+HH H+ A  T +NL     + Q+ R  +     SP+   ++++  PS+     
Sbjct: 61  SSHNQNNHHQHRSASPTRVNLFTSAPMTQSFRYSIDNRSISPNRSIAVSSNKPSNHHKIP 120

Query: 80  -AKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGS 100
            ++  C+CSPTTH GSFRC  H++     G    S
Sbjct: 121 DSRRRCMCSPTTHPGSFRCSLHKNVANPHGQGTAS 155

BLAST of Csa7G278200 vs. NCBI nr
Match: gi|700189152|gb|KGN44385.1| (hypothetical protein Csa_7G278200 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-64
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1

Query: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 118
           RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

BLAST of Csa7G278200 vs. NCBI nr
Match: gi|659126143|ref|XP_008463032.1| (PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 6.5e-49
Identity = 96/122 (78.69%), Postives = 107/122 (87.70%), Query Frame = 1

Query: 1   MDNKADHRAPRPNDRN----NHNNNHNHNHHHHHKMAFTDLNLEDLKQNPR-ILVSPSPP 60
           MDNKAD +APRPNDRN    NHN+NH+HNHHH+H+MA T+LNL DLK N   +LVSPSPP
Sbjct: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60

Query: 61  SSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSF 118
           S+ A +TPSSAKANCLCSPTTHIGSFRCRHHRH+GMIRGGSVGSNLSDL RKPTEI+G F
Sbjct: 61  ST-ATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPF 120

BLAST of Csa7G278200 vs. NCBI nr
Match: gi|703127862|ref|XP_010103953.1| (hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 55/114 (48.25%), Postives = 68/114 (59.65%), Query Frame = 1

Query: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60
           MD K + R+P+    NN N           K+   D+NL +LK+   +L SP    ++  
Sbjct: 1   MDEKVEQRSPQKIKENNMN----------FKLKIPDINLNELKKQTHLLASPRAQRAVTK 60

Query: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGS 115
              SS + NCLCSPTTH GSFRCRHHR S M+RGGSVGSNLS+L RKP  I  S
Sbjct: 61  S--SSTRWNCLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAISDS 102

BLAST of Csa7G278200 vs. NCBI nr
Match: gi|700200858|gb|KGN55991.1| (hypothetical protein Csa_3G045050 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-14
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1

Query: 31  KMAFTDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSG 90
           K A  +   +DLK+N  +L+SP+  S +      S K+NCLCSPTTHIGSFRCR HR + 
Sbjct: 21  KSAMVETEFDDLKKNANLLMSPTALSRMTKSR--SIKSNCLCSPTTHIGSFRCRRHRSTS 80

Query: 91  MIRGGSVGSNLSDLTRK 108
           + RGGSVGSNLSDL +K
Sbjct: 81  ISRGGSVGSNLSDLVQK 95

BLAST of Csa7G278200 vs. NCBI nr
Match: gi|922379672|ref|XP_013460070.1| (PGPS/D10 protein, putative [Medicago truncatula])

HSP 1 Score: 86.3 bits (212), Expect = 4.0e-14
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1

Query: 43  KQNPRILVSPSP---PSSIAA--RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSV 102
           K+N  +LVSP+    P+S+ +  R  SS + NCLCSPTTH GSFRCRHHR SGMIRGGSV
Sbjct: 26  KKNSHMLVSPTSLASPTSLKSNPRKSSSGRWNCLCSPTTHAGSFRCRHHRSSGMIRGGSV 85

Query: 103 GSNLSDLTRKPTEIVGS 115
           GSNL+ L  K   I  S
Sbjct: 86  GSNLAQLGNKAGAISDS 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K3W3_CUCSA7.7e-65100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278200 PE=4 SV=1[more]
W9SBP1_9ROSA1.7e-1948.25Uncharacterized protein OS=Morus notabilis GN=L484_020205 PE=4 SV=1[more]
A0A0A0L7C7_CUCSA7.3e-1555.84Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045050 PE=4 SV=1[more]
A0A072UXD4_MEDTR2.8e-1459.74PGPS/D10 protein, putative OS=Medicago truncatula GN=MTR_3g461010 PE=4 SV=1[more]
A0A0B2PP39_GLYSO1.4e-1352.38Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_039434 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G55980.12.8e-1065.00 serine-rich protein-related[more]
AT3G13227.12.8e-1044.30 serine-rich protein-related[more]
AT5G20370.13.5e-0837.18 serine-rich protein-related[more]
AT1G67910.13.8e-0750.00 unknown protein[more]
AT5G25280.15.0e-0732.63 serine-rich protein-related[more]
Match NameE-valueIdentityDescription
gi|700189152|gb|KGN44385.1|1.1e-64100.00hypothetical protein Csa_7G278200 [Cucumis sativus][more]
gi|659126143|ref|XP_008463032.1|6.5e-4978.69PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A [Cucumi... [more]
gi|703127862|ref|XP_010103953.1|2.4e-1948.25hypothetical protein L484_020205 [Morus notabilis][more]
gi|700200858|gb|KGN55991.1|1.0e-1455.84hypothetical protein Csa_3G045050 [Cucumis sativus][more]
gi|922379672|ref|XP_013460070.1|4.0e-1459.74PGPS/D10 protein, putative [Medicago truncatula][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009693 ethylene biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU143492cucumber EST collection version 3.0transcribed_cluster
CU170866cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G278200.1Csa7G278200.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU170866CU170866transcribed_cluster
CU143492CU143492transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 37..104
score: 2.4
NoneNo IPR availablePANTHERPTHR33132:SF9SUBFAMILY NOT NAMEDcoord: 37..104
score: 2.4