Cp4.1LG06g08220 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g08220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Serine-rich family protein
Location	Cp4.1LG06 : 5360144 .. 5360470 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCATAAACCAGATCACAAGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCTTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

mRNA sequence

ATGGATCATAAACCAGATCACAAGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCTTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

Coding sequence (CDS)

ATGGATCATAAACCAGATCACAAGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCTTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

Protein sequence

MDHKPDHKAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP

Homology

[Close]

BLAST of Cp4.1LG06g08220 vs. TrEMBL
Match: A0A0A0K3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-31
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 1


Query: 1   MDHKPDHKAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60
           MD+K DH+APRP DRNN N        HHHK  FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 109
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]

BLAST of Cp4.1LG06g08220 vs. TrEMBL
Match: W9SBP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-15
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 1  MDHKPDHKAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
          MD K + ++P+ I  NN N   K +  D +L + K+ T+LLAS  ++    K+ SS + +
Sbjct: 1  MDEKVEQRSPQKIKENNMNF--KLKIPDINLNELKKQTHLLASPRAQRAVTKS-SSTRWN 60

Query: 61 CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK 99
          CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Sbjct: 61 CLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARK 95

[Close]

BLAST of Cp4.1LG06g08220 vs. TrEMBL
Match: A0A0A0L7C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.9e-11
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 1


Query: 5   PDHKAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCS 64
           P    P+    N      K+   + + +D K+  NLL S  + S   K+  S K++CLCS
Sbjct: 3   PIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKS-RSIKSNCLCS 62

Query: 65  PTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
           PTTHIGSFRCR HR T + RG SVGSNLS+L  KS
Sbjct: 63  PTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKS 96

[Close]

BLAST of Cp4.1LG06g08220 vs. TrEMBL
Match: A0A072UXD4_MEDTR (PGPS/D10 protein, putative OS=Medicago truncatula GN=MTR_3g461010 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-11
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 41  LASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
           LAS  S    P+  SS + +CLCSPTTH GSFRCRHHR +GM+RG SVGSNL++L +K+
Sbjct: 38  LASPTSLKSNPRKSSSGRWNCLCSPTTHAGSFRCRHHRSSGMIRGGSVGSNLAQLGNKA 96

[Close]

BLAST of Cp4.1LG06g08220 vs. TrEMBL
Match: A0A151S4K4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028449 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-10
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1


Query: 1   MDHKPDHKAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
           M+ K + K P+    N+P         + D+E  K+ +++L S  S+S+  K  S+ + +
Sbjct: 1   MEPKVEQKPPKIKLSNSP---------EIDVETLKKNSHMLVSPTSQSITRKN-SNGRLN 60

Query: 61  CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTS 106
           CLCSPTTH+GSFRCRHHR   M RGRS+GSNL+ L  ++  +  S
Sbjct: 61  CLCSPTTHVGSFRCRHHRSAVMRRGRSIGSNLAALGSEAGSISDS 95

[Close]

BLAST of Cp4.1LG06g08220 vs. TAIR10
Match: AT3G13227.1 (AT3G13227.1 serine-rich protein-related)

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-08
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1


Query: 48  SLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHT---GMLRGRSVGSNLSELA 97
           S+     SS + +CLC+PTTH GSFRCR+HR     GM RG SV SNLS LA
Sbjct: 52  SVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

[Close]

BLAST of Cp4.1LG06g08220 vs. TAIR10
Match: AT5G55980.1 (AT5G55980.1 serine-rich protein-related)

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1


Query: 56 SAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSEL 96
          S + +CLCSPTTH GSFRCR+HR   + R  S+GSNL+ L
Sbjct: 59 STRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

[Close]

BLAST of Cp4.1LG06g08220 vs. NCBI nr
Match: gi|700189152|gb|KGN44385.1| (hypothetical protein Csa_7G278200 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-31
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 1


Query: 1   MDHKPDHKAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60
           MD+K DH+APRP DRNN N        HHHK  FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 109
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]

BLAST of Cp4.1LG06g08220 vs. NCBI nr
Match: gi|659126143|ref|XP_008463032.1| (PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-26
Identity = 70/121 (57.85%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 1   MDHKPDHKAPRPIDRNNPNH------------HHKTQFTDFDLEDFKQGTNLLASSPSR- 60
           MD+K D KAPRP DRN PNH            +H+   T+ +L D K   + L  SPS  
Sbjct: 1   MDNKADRKAPRPNDRNIPNHNHNHNHHHNHHHYHRMAITELNLADLKHNNHHLLVSPSPP 60

Query: 61  SLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYS 109
           S A K PSSAKA+CLCSPTTHIGSFRCRHHRH GM+RG SVGSNLS+LA K T++M  +S
Sbjct: 61  STATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRGGSVGSNLSDLARKPTEIMGPFS 120

[Close]

BLAST of Cp4.1LG06g08220 vs. NCBI nr
Match: gi|703127862|ref|XP_010103953.1| (hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 1  MDHKPDHKAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
          MD K + ++P+ I  NN N   K +  D +L + K+ T+LLAS  ++    K+ SS + +
Sbjct: 1  MDEKVEQRSPQKIKENNMNF--KLKIPDINLNELKKQTHLLASPRAQRAVTKS-SSTRWN 60

Query: 61 CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK 99
          CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Sbjct: 61 CLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARK 95

[Close]

BLAST of Cp4.1LG06g08220 vs. NCBI nr
Match: gi|700200858|gb|KGN55991.1| (hypothetical protein Csa_3G045050 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 8.4e-11
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 1


Query: 5   PDHKAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCS 64
           P    P+    N      K+   + + +D K+  NLL S  + S   K+  S K++CLCS
Sbjct: 3   PIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKS-RSIKSNCLCS 62

Query: 65  PTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
           PTTHIGSFRCR HR T + RG SVGSNLS+L  KS
Sbjct: 63  PTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKS 96

[Close]

BLAST of Cp4.1LG06g08220 vs. NCBI nr
Match: gi|922379672|ref|XP_013460070.1| (PGPS/D10 protein, putative [Medicago truncatula])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 41  LASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKS 100
           LAS  S    P+  SS + +CLCSPTTH GSFRCRHHR +GM+RG SVGSNL++L +K+
Sbjct: 38  LASPTSLKSNPRKSSSGRWNCLCSPTTHAGSFRCRHHRSSGMIRGGSVGSNLAQLGNKA 96

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g08220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g08220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3W3_CUCSA	1.0e-31	63.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278200 PE=4 SV=1	[more]
W9SBP1_9ROSA	1.3e-15	53.06	Uncharacterized protein OS=Morus notabilis GN=L484_020205 PE=4 SV=1	[more]
A0A0A0L7C7_CUCSA	5.9e-11	46.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045050 PE=4 SV=1	[more]
A0A072UXD4_MEDTR	7.6e-11	61.02	PGPS/D10 protein, putative OS=Medicago truncatula GN=MTR_3g461010 PE=4 SV=1	[more]
A0A151S4K4_CAJCA	1.0e-10	40.95	Uncharacterized protein OS=Cajanus cajan GN=KK1_028449 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g08220 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13227.1	2.4e-08	57.69	serine-rich protein-related	[more]
AT5G55980.1	4.1e-08	60.00	serine-rich protein-related	[more]

BLAST of Cp4.1LG06g08220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189152\|gb\|KGN44385.1\|	1.5e-31	63.25	hypothetical protein Csa_7G278200 [Cucumis sativus]	[more]
gi\|659126143\|ref\|XP_008463032.1\|	1.4e-26	57.85	PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A [Cucumi...	[more]
gi\|703127862\|ref\|XP_010103953.1\|	1.9e-15	53.06	hypothetical protein L484_020205 [Morus notabilis]	[more]
gi\|700200858\|gb\|KGN55991.1\|	8.4e-11	46.32	hypothetical protein Csa_3G045050 [Cucumis sativus]	[more]
gi\|922379672\|ref\|XP_013460070.1\|	1.1e-10	61.02	PGPS/D10 protein, putative [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009693	ethylene biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g08220.1	Cp4.1LG06g08220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 55..96 score: 1.5
None	No IPR available	PANTHER	PTHR33132:SF9	SUBFAMILY NOT NAMED	coord: 55..96 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g08220	Cucsa.240730	Cucumber (Gy14) v1	cgycpeB0648
Cp4.1LG06g08220	CmoCh09G010300	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g08220	CmoCh01G011020	Cucurbita moschata (Rifu)	cmocpeB464
Cp4.1LG06g08220	Cla003331	Watermelon (97103) v1	cpewmB753
Cp4.1LG06g08220	Csa7G278200	Cucumber (Chinese Long) v2	cpecuB803
Cp4.1LG06g08220	MELO3C024968	Melon (DHL92) v3.5.1	cpemeB710
Cp4.1LG06g08220	ClCG09G021530	Watermelon (Charleston Gray)	cpewcgB689
Cp4.1LG06g08220	CSPI07G11920	Wild cucumber (PI 183967)	cpecpiB803
Cp4.1LG06g08220	Lsi02G018090	Bottle gourd (USVL1VR-Ls)	cpelsiB633
Cp4.1LG06g08220	MELO3C024968.2	Melon (DHL92) v3.6.1	cpemedB847
Cp4.1LG06g08220	CsaV3_7G023850	Cucumber (Chinese Long) v3	cpecucB0993
Cp4.1LG06g08220	Bhi09G001507	Wax gourd	cpewgoB0989
Cp4.1LG06g08220	CsGy7G011120	Cucumber (Gy14) v2	cgybcpeB985
Cp4.1LG06g08220	Carg23345	Silver-seed gourd	carcpeB0111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g08220	Silver-seed gourd	carcpeB0608
Cp4.1LG06g08220	Cucurbita pepo (Zucchini)	cpecpeB460
Cp4.1LG06g08220	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g08220	Cucurbita maxima (Rimu)	cmacpeB508