MELO3C024664 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024664
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Rubisco accumulation factor 2, chloroplastic
Location	chr2 : 19897073 .. 19897898 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTACAGGTTGAGTAGAGAGTACAATAATTCATCGGAGCGGAGGACGGCGGCGTTGGAGGAGGCGTTGAAAGTGGTAGTGACGGAGAAGGCGAGGAATCTGATTGTTGGGGATTTGGAGAGGAAAGGAGATGGGAAGGACGGGGTTGAAGAAGAAACTGGAGCGGGAGTTAGGGTTCCGGTGGTGCGGCTGAAGATTGGGGAGGTTGCGGAGGCGACGAAGGTGGTGGTGATGCCGGTGTGCAAGGCAGGGGAAGGGGAAAAGGGAGTTGGAGAGGCGCCAATGGAGGTGAGAAGCGAGGGAGACTTCGGGGTTGTGGTGGCGGAAAAGGGGTGGAGCAGGTGGGTAGTGCTGCCGGGATGGGAGCCGGTGGCGGGGTTGGTGAAGGGTGGTGGCGTAGTGGTGGCGTTTAAGGATGCGAGGGTTCTGCCATGGCGAGTGAACAGGTGGTACAAGGAGGAGCCAATTCTGGTAGTGGCTGATCGGAGTAGGAAGGAGGTGGTGGCAGGAGATGGATTTTATCTGATGGGTGGAACTGTGGGCGGCGGAGATGGAGGTGGGGAGTTGAAGGTGGAGAGAGGAAATGCATTGACGGAAATGGGAGTGAAGGAGAGTTTAGGAACGGTAGTGTTGGTGGTTAGGCCGCCAAAGGAGATGGAAGATGATCAATTGAGTGATGAAGATTGGGATTAAAACTAAACAAAACTCATTTTTAAGACTCACGACAATTCAGTATTAGGTATTATTATATTATATTCTACACTTACAAATGTTGTATCATTGATTTTGGTTATTCAATTTTACGTTCCTTTTCCTCTTTTTT

mRNA sequence

ATGTATTACAGGTTGAGTAGAGAGTACAATAATTCATCGGAGCGGAGGACGGCGGCGTTGGAGGAGGCGTTGAAAGTGGTAGTGACGGAGAAGGCGAGGAATCTGATTGTTGGGGATTTGGAGAGGAAAGGAGATGGGAAGGACGGGGTTGAAGAAGAAACTGGAGCGGGAGTTAGGGTTCCGGTGGTGCGGCTGAAGATTGGGGAGGTTGCGGAGGCGACGAAGGTGGTGGTGATGCCGGTGTGCAAGGCAGGGGAAGGGGAAAAGGGAGTTGGAGAGGCGCCAATGGAGGTGAGAAGCGAGGGAGACTTCGGGGTTGTGGTGGCGGAAAAGGGGTGGAGCAGGTGGGTAGTGCTGCCGGGATGGGAGCCGGTGGCGGGGTTGGTGAAGGGTGGTGGCGTAGTGGTGGCGTTTAAGGATGCGAGGGTTCTGCCATGGCGAGTGAACAGGTGGTACAAGGAGGAGCCAATTCTGGTAGTGGCTGATCGGAGTAGGAAGGAGGTGGTGGCAGGAGATGGATTTTATCTGATGGGTGGAACTGTGGGCGGCGGAGATGGAGGTGGGGAGTTGAAGGTGGAGAGAGGAAATGCATTGACGGAAATGGGAGTGAAGGAGAGTTTAGGAACGGTAGTGTTGGTGGTTAGGCCGCCAAAGGAGATGGAAGATGATCAATTGAGTGATGAAGATTGGGATTAAAACTAAACAAAACTCATTTTTAAGACTCACGACAATTCAGTATTAGGTATTATTATATTATATTCTACACTTACAAATGTTGTATCATTGATTTTGGTTATTCAATTTTACGTTCCTTTTCCTCTTTTTT

Coding sequence (CDS)

ATGTATTACAGGTTGAGTAGAGAGTACAATAATTCATCGGAGCGGAGGACGGCGGCGTTGGAGGAGGCGTTGAAAGTGGTAGTGACGGAGAAGGCGAGGAATCTGATTGTTGGGGATTTGGAGAGGAAAGGAGATGGGAAGGACGGGGTTGAAGAAGAAACTGGAGCGGGAGTTAGGGTTCCGGTGGTGCGGCTGAAGATTGGGGAGGTTGCGGAGGCGACGAAGGTGGTGGTGATGCCGGTGTGCAAGGCAGGGGAAGGGGAAAAGGGAGTTGGAGAGGCGCCAATGGAGGTGAGAAGCGAGGGAGACTTCGGGGTTGTGGTGGCGGAAAAGGGGTGGAGCAGGTGGGTAGTGCTGCCGGGATGGGAGCCGGTGGCGGGGTTGGTGAAGGGTGGTGGCGTAGTGGTGGCGTTTAAGGATGCGAGGGTTCTGCCATGGCGAGTGAACAGGTGGTACAAGGAGGAGCCAATTCTGGTAGTGGCTGATCGGAGTAGGAAGGAGGTGGTGGCAGGAGATGGATTTTATCTGATGGGTGGAACTGTGGGCGGCGGAGATGGAGGTGGGGAGTTGAAGGTGGAGAGAGGAAATGCATTGACGGAAATGGGAGTGAAGGAGAGTTTAGGAACGGTAGTGTTGGTGGTTAGGCCGCCAAAGGAGATGGAAGATGATCAATTGAGTGATGAAGATTGGGATTAA

Protein sequence

MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD*

Homology

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BLAST of MELO3C024664 vs. Swiss-Prot
Match: RAF2_ARATH (Rubisco accumulation factor 2, chloroplastic OS=Arabidopsis thaliana GN=RAF2 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.4e-57
Identity = 130/237 (54.85%), Postives = 159/237 (67.09%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLI----VGDLERKGDGKDGVEEETGA 60
           +YYR SRE  N S++RT+ L +AL V  +EKA+N +     GD E + + +   +EE   
Sbjct: 225 LYYRQSRENKNPSDQRTSMLLQALGVAESEKAKNRLNTELYGDKEAEKEKEKKKKEEEVK 284

Query: 61  GVRVPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRW 120
            +R+PVVRLK GEVAEAT VVV+PVCKA EGEK + EAPME+ + GDF VV AEKGW RW
Sbjct: 285 AIRIPVVRLKFGEVAEATSVVVLPVCKAEEGEKKILEAPMEIIAGGDFKVVEAEKGWKRW 344

Query: 121 VVLPGWEPVAGLVKGGGVVVAFKDAR-VLPWRVNRWYKEEPILVVADRSRKEVVAGDGFY 180
           VVLP W PVA + K GGV V+F+D R VLPW      KEEP+LVVADR R  V A DG+Y
Sbjct: 345 VVLPSWNPVAAIGK-GGVAVSFRDDRKVLPWD----GKEEPLLVVADRVRNVVEADDGYY 404

Query: 181 LMGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDD-QLSDEDWD 232
           L+    G       LK+E+G+ L    VKESLG VVLVVRPP+E +DD Q S ++WD
Sbjct: 405 LVVAENG-------LKLEKGSDLKAREVKESLGMVVLVVRPPREDDDDWQTSHQNWD 449

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BLAST of MELO3C024664 vs. Swiss-Prot
Match: RAF1_ARATH (Rubisco accumulation factor 1, chloroplastic OS=Arabidopsis thaliana GN=RAF1 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 9.1e-55
Identity = 123/233 (52.79%), Postives = 158/233 (67.81%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           M YR SRE+ + SE RT  LE+AL+  VTEKA+  ++ +L  + + ++ V+EE    +RV
Sbjct: 215 MLYRKSREHRSPSEIRTTLLEQALETAVTEKAKKAVLRELHGESE-EERVKEEEIKIIRV 274

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVRL+ GEVA A+ VVV+PVCKA EGE+ + EAPME  S G+FGVV AEK WSRWVVLP
Sbjct: 275 PVVRLRFGEVAGASSVVVLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLP 334

Query: 121 GWEPVAGLVKGGGVVVAFKDAR-VLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGG 180
           GW+PV  + K  GV V+F D R VLPW      K E I+VV DR +K V A +G+Y +  
Sbjct: 335 GWDPVVAVRK--GVAVSFSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVV 394

Query: 181 TVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDD-QLSDEDWD 232
             GG      +K++RG  L E GV ESLG VVLVVRPP++ +D+ Q++DEDWD
Sbjct: 395 ADGG------MKLDRGLVLKEKGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434

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BLAST of MELO3C024664 vs. Swiss-Prot
Match: RAF1_ORYSJ (Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=RAF1 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.7e-41
Identity = 104/239 (43.51%), Postives = 141/239 (59.00%), Query Frame = 1


Query: 3   YRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLER--------KGDGKDGVEEET 62
           +R SRE  ++ E   A LE AL+VV TE AR  +  +L+R        + D +DG     
Sbjct: 245 FRQSREAIDA-EDSVAELERALEVVDTEPARARVEAELDRARRKAAGEEVDDEDGAANAA 304

Query: 63  GAGVR--VPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKG 122
            A  R  VPVVRL  GEVAEAT V+++PV + G+G + +  AP   R++ D G+V  +KG
Sbjct: 305 AAASRPAVPVVRLMYGEVAEATTVLLLPVVREGDGGEALAHAPRRTRTDADLGMVEVDKG 364

Query: 123 WSRWVVLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGD 182
           W+RW V+PGW PVA  V G  VV+   D R LPWR     + E +LVVA+R R+EVV  D
Sbjct: 365 WTRWAVVPGWGPVAE-VAGEAVVIELADGRTLPWRS---AEAERVLVVANRGRREVVE-D 424

Query: 183 GFYLMGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
           G Y++       +  G L VE+G  L   GV E+   V++VVRPP++ EDD +SD++WD
Sbjct: 425 GIYVV-------EREGRLVVEKGRKLAAEGVGEAAAEVLVVVRPPRD-EDDMISDDEWD 469

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BLAST of MELO3C024664 vs. Swiss-Prot
Match: RAF1_MAIZE (Rubisco accumulation factor 1, chloroplastic OS=Zea mays GN=RAF1 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-39
Identity = 104/239 (43.51%), Postives = 142/239 (59.41%), Query Frame = 1


Query: 3   YRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLER---KGDGKDGVEEE-----T 62
           +R SRE  +  +R  A LE AL+VV TE  R  +  +LER   K  G++ V+EE      
Sbjct: 239 FRQSREAIDVQDR-VAELERALQVVETESGRARVELELERARRKAAGEEEVDEEGEEDDA 298

Query: 63  GAGVR--VPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKG 122
            A +R  V VVRL+ GEVAEAT V+++PV +  +G   +  AP   +++   GVV  ++ 
Sbjct: 299 AASLRPGVTVVRLRYGEVAEATTVILLPVVRETDGVAAMESAPRRAKTDVGLGVVEVDRA 358

Query: 123 WSRWVVLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGD 182
           W+RW V+PGW PVA       VVV   D R LPWR++    EEP+LV+A+RS+KEVV  +
Sbjct: 359 WARWAVVPGWGPVAE-AADDAVVVELADGRRLPWRMS---DEEPVLVIANRSKKEVVE-E 418

Query: 183 GFYLMGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
           G Y++       +  G L VERG  L E G+  +   VV+VVRPPK+ EDD +SDE+WD
Sbjct: 419 GVYVL-------EREGRLVVERGKKLAEQGIAAAAAEVVIVVRPPKD-EDDMVSDEEWD 463

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BLAST of MELO3C024664 vs. TrEMBL
Match: A0A0A0LY43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690280 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 5.5e-115
Identity = 210/231 (90.91%), Postives = 221/231 (95.67%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           MYYRLSREYN+S+ERRTAALEEALKVVVTEKAR+LIVGDLE KGDGKDGVEEE GA V+V
Sbjct: 224 MYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKV 283

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVR+KIGEVAEAT VVVMPVCKAGEGEKGVGEAPMEVRSEG+FGVVVAEKGWSRWVVLP
Sbjct: 284 PVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLP 343

Query: 121 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 180
           GWEPVAGLVKGGGVVVAF+DARVLPWRVNRWYKEEPILVVADRSR+EVVAGDGFYLM   
Sbjct: 344 GWEPVAGLVKGGGVVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM--- 403

Query: 181 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
            GGGDGGG+LKVERGNAL EMGVKESLGTV+LVVRPP+E EDDQLSDEDWD
Sbjct: 404 -GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450

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BLAST of MELO3C024664 vs. TrEMBL
Match: W9RQR4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024527 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.0e-80
Identity = 157/231 (67.97%), Postives = 184/231 (79.65%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           MY+R SRE+   SE+RTAALE+AL   VTE+A+  ++ +L  +G+G+   E E G  VRV
Sbjct: 207 MYFRQSREHKKPSEQRTAALEQALSAAVTERAKGRVLEELNAEGEGEITGEGEIGEEVRV 266

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVRLKIGEVAEA+ V V+PVCKAGE +KG+ EAP E  +EG+FGVVVAEKGW+RWVVLP
Sbjct: 267 PVVRLKIGEVAEASTVAVLPVCKAGERDKGLEEAPRECWTEGEFGVVVAEKGWARWVVLP 326

Query: 121 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 180
            WEPVAGL K GGVVV+F DARVLPWR NRWYKEE ILVVADR RKEV   +GFYL+GG 
Sbjct: 327 AWEPVAGLGK-GGVVVSFSDARVLPWRTNRWYKEEAILVVADRDRKEVSVDNGFYLVGG- 386

Query: 181 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
                 GG+LKVERG+AL E GV+ESLGTVVLVVRPPK+  DDQLSDEDW+
Sbjct: 387 -----DGGDLKVERGSALKETGVEESLGTVVLVVRPPKDAVDDQLSDEDWE 430

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BLAST of MELO3C024664 vs. TrEMBL
Match: A0A067D231_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027357mg PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.2e-79
Identity = 159/231 (68.83%), Postives = 178/231 (77.06%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           MYYR S+EY N SE RTAAL+ AL VV +E A+N+I  +LE    GKD   +E    V+V
Sbjct: 1   MYYRQSKEYKNPSEERTAALQLALDVVESEDAKNVITRELEGGRAGKDSTGDELVDVVKV 60

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVRLKIGEV+EAT VVV+PVC+A E E  V EAP E +SEGDFGVVVAEKGW+RWVVLP
Sbjct: 61  PVVRLKIGEVSEATTVVVLPVCRAEEKENNVLEAPWECKSEGDFGVVVAEKGWTRWVVLP 120

Query: 121 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 180
           GWEPV GL + GGVVVAF DARVLPWR NRWY EE ILVVADRSRKEV   DGFYL+ G 
Sbjct: 121 GWEPVVGL-RNGGVVVAFSDARVLPWRANRWYYEEAILVVADRSRKEVAVDDGFYLVVG- 180

Query: 181 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
                 GGELKVERG+ L E GV+ESLGTV LVVRPPKE  DDQ++DEDWD
Sbjct: 181 -----DGGELKVERGSMLKERGVEESLGTVALVVRPPKEETDDQIADEDWD 224

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BLAST of MELO3C024664 vs. TrEMBL
Match: A0A061F0U6_THECC (F7O18.2 protein OS=Theobroma cacao GN=TCM_026242 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 8.3e-79
Identity = 158/231 (68.40%), Postives = 184/231 (79.65%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           MYYR SRE+ N SE+RT+AL +ALKV  +E A+  ++ +LE   DGK+  EE+   GVRV
Sbjct: 280 MYYRQSREHKNPSEQRTSALRQALKVAESESAKKELLEELECGEDGKEEKEEDLDYGVRV 339

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVRLKIGEVAEA+ VVV+PVCKA E ++ + +AP+E RS+GDFGVV AEKGW+RWVVLP
Sbjct: 340 PVVRLKIGEVAEASSVVVLPVCKAEEKDREILQAPLECRSKGDFGVVEAEKGWNRWVVLP 399

Query: 121 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 180
           GWEPV GL   GGVVVAF DAR LPW+ NRWYKEEPILVVADRSRKEV   DGFYL+  T
Sbjct: 400 GWEPVVGL-SNGGVVVAFGDARGLPWKANRWYKEEPILVVADRSRKEVEFDDGFYLV--T 459

Query: 181 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
           V      GELKV+RG+AL E GVKESLGTVVLVVRPPKE  D+QLSDEDW+
Sbjct: 460 V----DSGELKVDRGSALKETGVKESLGTVVLVVRPPKEETDNQLSDEDWE 503

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BLAST of MELO3C024664 vs. TrEMBL
Match: F6HVH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00710 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.8e-78
Identity = 157/231 (67.97%), Postives = 180/231 (77.92%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           MYYR SRE+ NS ++R AALE+AL+V  TEKA+ +++ +LER  D  DG  E  GA VRV
Sbjct: 216 MYYRQSREHRNSLDKRRAALEKALEVAETEKAKRVLLEELERNDDADDGKSEIEGA-VRV 275

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVR+K GEVAEAT VVV+PVC+A EG   V  AP+E RS+G+FGVVVAEKGW RWVVLP
Sbjct: 276 PVVRMKTGEVAEATTVVVLPVCEAQEGVDVVLGAPLECRSQGEFGVVVAEKGWKRWVVLP 335

Query: 121 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 180
           GWEPVAGL    GVVVAF DAR LPWRVNRWYKEE ILVVA+R  KEVVA  GFYL+  +
Sbjct: 336 GWEPVAGL--RAGVVVAFGDARALPWRVNRWYKEEAILVVANRGAKEVVADAGFYLVAVS 395

Query: 181 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
              G  GGELKVERG+AL E GVKESLGTVVLVVRPP+E  D +L DEDW+
Sbjct: 396 SDNGSAGGELKVERGSALKERGVKESLGTVVLVVRPPREETDHELRDEDWE 443

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BLAST of MELO3C024664 vs. TAIR10
Match: AT3G04550.1 (AT3G04550.1 unknown protein)

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-58
Identity = 130/237 (54.85%), Postives = 159/237 (67.09%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLI----VGDLERKGDGKDGVEEETGA 60
           +YYR SRE  N S++RT+ L +AL V  +EKA+N +     GD E + + +   +EE   
Sbjct: 225 LYYRQSRENKNPSDQRTSMLLQALGVAESEKAKNRLNTELYGDKEAEKEKEKKKKEEEVK 284

Query: 61  GVRVPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRW 120
            +R+PVVRLK GEVAEAT VVV+PVCKA EGEK + EAPME+ + GDF VV AEKGW RW
Sbjct: 285 AIRIPVVRLKFGEVAEATSVVVLPVCKAEEGEKKILEAPMEIIAGGDFKVVEAEKGWKRW 344

Query: 121 VVLPGWEPVAGLVKGGGVVVAFKDAR-VLPWRVNRWYKEEPILVVADRSRKEVVAGDGFY 180
           VVLP W PVA + K GGV V+F+D R VLPW      KEEP+LVVADR R  V A DG+Y
Sbjct: 345 VVLPSWNPVAAIGK-GGVAVSFRDDRKVLPWD----GKEEPLLVVADRVRNVVEADDGYY 404

Query: 181 LMGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDD-QLSDEDWD 232
           L+    G       LK+E+G+ L    VKESLG VVLVVRPP+E +DD Q S ++WD
Sbjct: 405 LVVAENG-------LKLEKGSDLKAREVKESLGMVVLVVRPPREDDDDWQTSHQNWD 449

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BLAST of MELO3C024664 vs. TAIR10
Match: AT5G28500.1 (AT5G28500.1 unknown protein)

HSP 1 Score: 214.9 bits (546), Expect = 5.1e-56
Identity = 123/233 (52.79%), Postives = 158/233 (67.81%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           M YR SRE+ + SE RT  LE+AL+  VTEKA+  ++ +L  + + ++ V+EE    +RV
Sbjct: 215 MLYRKSREHRSPSEIRTTLLEQALETAVTEKAKKAVLRELHGESE-EERVKEEEIKIIRV 274

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVRL+ GEVA A+ VVV+PVCKA EGE+ + EAPME  S G+FGVV AEK WSRWVVLP
Sbjct: 275 PVVRLRFGEVAGASSVVVLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLP 334

Query: 121 GWEPVAGLVKGGGVVVAFKDAR-VLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGG 180
           GW+PV  + K  GV V+F D R VLPW      K E I+VV DR +K V A +G+Y +  
Sbjct: 335 GWDPVVAVRK--GVAVSFSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVV 394

Query: 181 TVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDD-QLSDEDWD 232
             GG      +K++RG  L E GV ESLG VVLVVRPP++ +D+ Q++DEDWD
Sbjct: 395 ADGG------MKLDRGLVLKEKGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434

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BLAST of MELO3C024664 vs. NCBI nr
Match: gi|659125493|ref|XP_008462710.1| (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo])

HSP 1 Score: 464.5 bits (1194), Expect = 1.1e-127
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV
Sbjct: 224 MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 283

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP
Sbjct: 284 PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 343

Query: 121 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 180
           GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT
Sbjct: 344 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 403

Query: 181 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
           VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD
Sbjct: 404 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

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BLAST of MELO3C024664 vs. NCBI nr
Match: gi|449449643|ref|XP_004142574.1| (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 421.8 bits (1083), Expect = 7.9e-115
Identity = 210/231 (90.91%), Postives = 221/231 (95.67%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           MYYRLSREYN+S+ERRTAALEEALKVVVTEKAR+LIVGDLE KGDGKDGVEEE GA V+V
Sbjct: 224 MYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKV 283

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVR+KIGEVAEAT VVVMPVCKAGEGEKGVGEAPMEVRSEG+FGVVVAEKGWSRWVVLP
Sbjct: 284 PVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLP 343

Query: 121 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 180
           GWEPVAGLVKGGGVVVAF+DARVLPWRVNRWYKEEPILVVADRSR+EVVAGDGFYLM   
Sbjct: 344 GWEPVAGLVKGGGVVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM--- 403

Query: 181 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
            GGGDGGG+LKVERGNAL EMGVKESLGTV+LVVRPP+E EDDQLSDEDWD
Sbjct: 404 -GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450

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BLAST of MELO3C024664 vs. NCBI nr
Match: gi|720060227|ref|XP_010274815.1| (PREDICTED: rubisco accumulation factor 1, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 308.9 bits (790), Expect = 7.4e-81
Identity = 159/231 (68.83%), Postives = 182/231 (78.79%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           MYYR SRE+ N SE+RT+ALE AL+VV +EKA+  I+ +LE K   ++G + E G G+RV
Sbjct: 225 MYYRQSREHRNPSEQRTSALERALEVVESEKAKAKILDELEGKSGREEGTDGEIGVGIRV 284

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVR+KIGEVAEAT VVV+PVC A EG + V EAP E RSEG+FGVVVAEKGW RWVVLP
Sbjct: 285 PVVRMKIGEVAEATSVVVLPVCGATEGARAVEEAPGECRSEGEFGVVVAEKGWRRWVVLP 344

Query: 121 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 180
           GWEPV GL  G GVVVAF DARVLPW+VNRWYKEE ILVVADR  +EVVA  GFYL+G  
Sbjct: 345 GWEPVVGL--GRGVVVAFPDARVLPWKVNRWYKEEAILVVADRRTREVVAEGGFYLVGSK 404

Query: 181 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
            GG DG   LKVERG  L ++GVKE LG+VVLVVRPPKE  DDQL DEDW+
Sbjct: 405 EGGSDG---LKVERGTNLKKLGVKECLGSVVLVVRPPKEETDDQLQDEDWE 450

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BLAST of MELO3C024664 vs. NCBI nr
Match: gi|703121088|ref|XP_010102246.1| (hypothetical protein L484_024527 [Morus notabilis])

HSP 1 Score: 307.0 bits (785), Expect = 2.8e-80
Identity = 157/231 (67.97%), Postives = 184/231 (79.65%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           MY+R SRE+   SE+RTAALE+AL   VTE+A+  ++ +L  +G+G+   E E G  VRV
Sbjct: 207 MYFRQSREHKKPSEQRTAALEQALSAAVTERAKGRVLEELNAEGEGEITGEGEIGEEVRV 266

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVRLKIGEVAEA+ V V+PVCKAGE +KG+ EAP E  +EG+FGVVVAEKGW+RWVVLP
Sbjct: 267 PVVRLKIGEVAEASTVAVLPVCKAGERDKGLEEAPRECWTEGEFGVVVAEKGWARWVVLP 326

Query: 121 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 180
            WEPVAGL K GGVVV+F DARVLPWR NRWYKEE ILVVADR RKEV   +GFYL+GG 
Sbjct: 327 AWEPVAGLGK-GGVVVSFSDARVLPWRTNRWYKEEAILVVADRDRKEVSVDNGFYLVGG- 386

Query: 181 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
                 GG+LKVERG+AL E GV+ESLGTVVLVVRPPK+  DDQLSDEDW+
Sbjct: 387 -----DGGDLKVERGSALKETGVEESLGTVVLVVRPPKDAVDDQLSDEDWE 430

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BLAST of MELO3C024664 vs. NCBI nr
Match: gi|641809974|gb|KDO36843.1| (hypothetical protein CISIN_1g027357mg [Citrus sinensis])

HSP 1 Score: 303.5 bits (776), Expect = 3.1e-79
Identity = 159/231 (68.83%), Postives = 178/231 (77.06%), Query Frame = 1


Query: 1   MYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRV 60
           MYYR S+EY N SE RTAAL+ AL VV +E A+N+I  +LE    GKD   +E    V+V
Sbjct: 1   MYYRQSKEYKNPSEERTAALQLALDVVESEDAKNVITRELEGGRAGKDSTGDELVDVVKV 60

Query: 61  PVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLP 120
           PVVRLKIGEV+EAT VVV+PVC+A E E  V EAP E +SEGDFGVVVAEKGW+RWVVLP
Sbjct: 61  PVVRLKIGEVSEATTVVVLPVCRAEEKENNVLEAPWECKSEGDFGVVVAEKGWTRWVVLP 120

Query: 121 GWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGT 180
           GWEPV GL + GGVVVAF DARVLPWR NRWY EE ILVVADRSRKEV   DGFYL+ G 
Sbjct: 121 GWEPVVGL-RNGGVVVAFSDARVLPWRANRWYYEEAILVVADRSRKEVAVDDGFYLVVG- 180

Query: 181 VGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 232
                 GGELKVERG+ L E GV+ESLGTV LVVRPPKE  DDQ++DEDWD
Sbjct: 181 -----DGGELKVERGSMLKERGVEESLGTVALVVRPPKEETDDQIADEDWD 224

The following BLAST results are available for this feature:

BLAST of MELO3C024664 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAF2_ARATH	4.4e-57	54.85	Rubisco accumulation factor 2, chloroplastic OS=Arabidopsis thaliana GN=RAF2 PE=...	[more]
RAF1_ARATH	9.1e-55	52.79	Rubisco accumulation factor 1, chloroplastic OS=Arabidopsis thaliana GN=RAF1 PE=...	[more]
RAF1_ORYSJ	5.7e-41	43.51	Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=...	[more]
RAF1_MAIZE	1.1e-39	43.51	Rubisco accumulation factor 1, chloroplastic OS=Zea mays GN=RAF1 PE=1 SV=1	[more]

BLAST of MELO3C024664 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY43_CUCSA	5.5e-115	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690280 PE=4 SV=1	[more]
W9RQR4_9ROSA	2.0e-80	67.97	Uncharacterized protein OS=Morus notabilis GN=L484_024527 PE=4 SV=1	[more]
A0A067D231_CITSI	2.2e-79	68.83	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027357mg PE=4 SV=1	[more]
A0A061F0U6_THECC	8.3e-79	68.40	F7O18.2 protein OS=Theobroma cacao GN=TCM_026242 PE=4 SV=1	[more]
F6HVH7_VITVI	1.8e-78	67.97	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00710 PE=4 SV=...	[more]

BLAST of MELO3C024664 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04550.1	2.5e-58	54.85	unknown protein	[more]
AT5G28500.1	5.1e-56	52.79	unknown protein	[more]

BLAST of MELO3C024664 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125493\|ref\|XP_008462710.1\|	1.1e-127	100.00	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo]	[more]
gi\|449449643\|ref\|XP_004142574.1\|	7.9e-115	90.91	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis sativus]	[more]
gi\|720060227\|ref\|XP_010274815.1\|	7.4e-81	68.83	PREDICTED: rubisco accumulation factor 1, chloroplastic-like [Nelumbo nucifera]	[more]
gi\|703121088\|ref\|XP_010102246.1\|	2.8e-80	67.97	hypothetical protein L484_024527 [Morus notabilis]	[more]
gi\|641809974\|gb\|KDO36843.1\|	3.1e-79	68.83	hypothetical protein CISIN_1g027357mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024664T1	MELO3C024664T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35299	FAMILY NOT NAMED	coord: 1..231 score: 7.0E
None	No IPR available	PANTHER	PTHR35299:SF2	RUBISCO ACCUMULATION FACTOR 1, CHLOROPLASTIC-RELATED	coord: 1..231 score: 7.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024664	Csa1G690280	Cucumber (Chinese Long) v2	cumeB045
MELO3C024664	Cla002983	Watermelon (97103) v1	mewmB292
MELO3C024664	ClCG06G009410	Watermelon (Charleston Gray)	mewcgB257
MELO3C024664	Cla97C06G119120	Watermelon (97103) v2	mewmbB264
MELO3C024664	Bhi02G001029	Wax gourd	mewgoB310
MELO3C024664	CSPI01G33590	Wild cucumber (PI 183967)	cpimeB045
MELO3C024664	Cucsa.291680	Cucumber (Gy14) v1	cgymeB484
MELO3C024664	CmaCh11G009810	Cucurbita maxima (Rimu)	cmameB109
MELO3C024664	CmoCh11G010010	Cucurbita moschata (Rifu)	cmomeB102
MELO3C024664	Lsi06G007970	Bottle gourd (USVL1VR-Ls)	lsimeB401
MELO3C024664	Cp4.1LG04g01890	Cucurbita pepo (Zucchini)	cpemeB617
MELO3C024664	CsGy1G032240	Cucumber (Gy14) v2	cgybmeB041
MELO3C024664	Carg16480	Silver-seed gourd	carmeB0896
MELO3C024664	CsaV3_1G045560	Cucumber (Chinese Long) v3	cucmeB045

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024664	Silver-seed gourd	carmeB0020
MELO3C024664	Watermelon (97103) v2	mewmbB262
MELO3C024664	Watermelon (97103) v2	mewmbB266
MELO3C024664	Cucurbita maxima (Rimu)	cmameB071
MELO3C024664	Cucurbita moschata (Rifu)	cmomeB064
MELO3C024664	Watermelon (Charleston Gray)	mewcgB259
MELO3C024664	Watermelon (97103) v1	mewmB290
MELO3C024664	Cucurbita pepo (Zucchini)	cpemeB686