BLAST of Cp4.1LG04g01890 vs. Swiss-Prot
Match:
RAF2_ARATH (Rubisco accumulation factor 2, chloroplastic OS=Arabidopsis thaliana GN=RAF2 PE=1 SV=1)
HSP 1 Score: 446.0 bits (1146), Expect = 4.7e-124
Identity = 250/458 (54.59%), Postives = 333/458 (72.71%), Query Frame = 1
Query: 10 SLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLIS----ASLNPYPSPSPLV-----AKP 69
SL + + T +TT L T P+ + P +S AS+ P S + ++ A+
Sbjct: 3 SLKSLISSPFTQSTTHGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQ 62
Query: 70 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 129
Q+YQPFRPP SP+P+Q+RSLD+AGK+++LA R+ LWFEYAPLISSL +GFTPPTIEE+T
Sbjct: 63 QLYQPFRPPSSPIPTQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELT 122
Query: 130 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 189
GI ++QN L+VGAQVR+S++Q+I+ +P+LI+AFDTGGAELLYEIRLL+ +R AAA +
Sbjct: 123 GISSIEQNRLIVGAQVRDSILQSIH--EPELISAFDTGGAELLYEIRLLSTTQRVAAATF 182
Query: 190 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 249
I+D +D KGAQDLARA+KD+P RRGD GW F+Y+ PGDCL+F++YR SRE N S+ R
Sbjct: 183 IIDRNIDSKGAQDLARAIKDYPNRRGDVGWLDFDYNLPGDCLSFLYYRQSRENKNPSDQR 242
Query: 250 TSALEDALKVAVTEEARSLIVRDL------EREGEGKDEAEEEIEAGVKVPVVRLKIGEV 309
TS L AL VA +E+A++ + +L E+E E K + EEE++A +++PVVRLK GEV
Sbjct: 243 TSMLLQALGVAESEKAKNRLNTELYGDKEAEKEKE-KKKKEEEVKA-IRIPVVRLKFGEV 302
Query: 310 AEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGK 369
AEAT+VVVLPVC EEG K + EAPME+ + G+F VV E+GW+RWVVLP W P+A +GK
Sbjct: 303 AEATSVVVLPVCKAEEGEKKILEAPMEIIAGGDFKVVEAEKGWKRWVVLPSWNPVAAIGK 362
Query: 370 GGVVVAFKDAR-ALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQR 429
GGV V+F+D R LPW KEE +LVVADR R VEA DG+YL A + LK+++
Sbjct: 363 GGVAVSFRDDRKVLPWD----GKEEPLLVVADRVRNVVEADDGYYLVVA---ENGLKLEK 422
Query: 430 GSELMEMGLKESLGTVLLVVRPPKDMDDD-QLSDEDWD 451
GS+L +KESLG V+LVVRPP++ DDD Q S ++WD
Sbjct: 423 GSDLKAREVKESLGMVVLVVRPPREDDDDWQTSHQNWD 449
BLAST of Cp4.1LG04g01890 vs. Swiss-Prot
Match:
RAF1_ARATH (Rubisco accumulation factor 1, chloroplastic OS=Arabidopsis thaliana GN=RAF1 PE=2 SV=1)
HSP 1 Score: 444.9 bits (1143), Expect = 1.1e-123
Identity = 261/452 (57.74%), Postives = 327/452 (72.35%), Query Frame = 1
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLS TA T+LS++ T + T +T P+ R+P I+++L P S K
Sbjct: 1 MLSLTA--TTLSSSIF--TQSKTHGFFNTRPV---YRKPFTTITSALIP-ASNRQAPPKQ 60
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
Q+YQPFRPPPSP+P ++RSLD AGK++VLA+RLGLWFEYAPLISSL EGFTPP+IEE+T
Sbjct: 61 QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GI GV+QN+L+VGAQVR+SLVQ+ A P+LIAAFDT GAELLYEIRLLN +R AAA Y
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS--GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEY 180
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
IVD+ D KGA DLARA+KDFP RRGD G F+Y+ PGDCL+FM YR SRE+ + SE R
Sbjct: 181 IVDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIR 240
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
T+ LE AL+ AVTE+A+ ++R+L E E + EEEI+ ++VPVVRL+ GEVA A++V
Sbjct: 241 TTLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEIKI-IRVPVVRLRFGEVAGASSV 300
Query: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
VVLPVC EEG + + EAPME S GEFGVV E+ W RWVVLPGW+P+ + K GV V+
Sbjct: 301 VVLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK-GVAVS 360
Query: 361 FKDAR-ALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELME 420
F D R LPW K EAI+VV DR +K VEA +G+Y DG +K+ RG L E
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVA--DGGMKLDRGLVLKE 420
Query: 421 MGLKESLGTVLLVVRPPKDMDDD-QLSDEDWD 451
G+ ESLG V+LVVRPP+D DD+ Q++DEDWD
Sbjct: 421 KGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434
BLAST of Cp4.1LG04g01890 vs. Swiss-Prot
Match:
RAF1_ORYSJ (Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=RAF1 PE=2 SV=1)
HSP 1 Score: 351.7 bits (901), Expect = 1.2e-95
Identity = 214/478 (44.77%), Postives = 291/478 (60.88%), Query Frame = 1
Query: 1 MLSATAP-----ATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYP---- 60
MLS + P +T+ +AAA H F H R F + + + P
Sbjct: 1 MLSLSHPHPHPASTTAAAAARHHHRRNAPFAPHHRRRRRFAHLTTSAVILGPDGRPIGGG 60
Query: 61 --------SPSPLVAKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLI 120
+P P Q+YQPF PPPSPLP +Y+ LD +L VL +RLGLW EYAPLI
Sbjct: 61 PRDNKLPFTPPPTAPPDQLYQPFHPPPSPLPDKYKDLDLGQRLAVLRDRLGLWHEYAPLI 120
Query: 121 SSLIQEGFTPPTIEEITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDT-GGAEL 180
S+L +EGFTP +IEE TGI GV+QN++VV QVR+SLV +L+ FD+ GG EL
Sbjct: 121 SALSREGFTPSSIEEATGISGVEQNSVVVATQVRDSLVADEGGFPAELLRYFDSYGGPEL 180
Query: 181 LYEIRLLNAEKRAAAARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCL 240
LYE+R LNA +RA AAR+ +D RL+ +G ++LAR+MKDFP+RRGD GWE+F D PGDCL
Sbjct: 181 LYELRFLNARQRADAARHAIDRRLEPRGVRELARSMKDFPQRRGDDGWEAFTRDNPGDCL 240
Query: 241 AFMHYRLSREYSNMSEARTSALEDALKVAVTEEARSLIVRDLERE-----GEGKDEAEEE 300
AF +R SRE + +E + LE AL+V TE AR+ + +L+R GE D+ +
Sbjct: 241 AFARFRQSREAID-AEDSVAELERALEVVDTEPARARVEAELDRARRKAAGEEVDDEDGA 300
Query: 301 IEAGVK-----VPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVV 360
A VPVVRL GEVAEATTV++LPV +GG+ + AP R++ + G+V
Sbjct: 301 ANAAAAASRPAVPVVRLMYGEVAEATTVLLLPVVREGDGGEALAHAPRRTRTDADLGMVE 360
Query: 361 VEEGWRRWVVLPGWEPIAGLGKGGVVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVE 420
V++GW RW V+PGW P+A + VV+ D R LPWR + E +LVVA+R R+EV
Sbjct: 361 VDKGWTRWAVVPGWGPVAEVAGEAVVIELADGRTLPWRSA---EAERVLVVANRGRREV- 420
Query: 421 AGDGFYLTGATGNDGELKVQRGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
DG Y+ +G L V++G +L G+ E+ VL+VVRPP+D +DD +SD++WD
Sbjct: 421 VEDGIYVVE---REGRLVVEKGRKLAAEGVGEAAAEVLVVVRPPRD-EDDMISDDEWD 469
BLAST of Cp4.1LG04g01890 vs. Swiss-Prot
Match:
RAF1_MAIZE (Rubisco accumulation factor 1, chloroplastic OS=Zea mays GN=RAF1 PE=1 SV=1)
HSP 1 Score: 348.2 bits (892), Expect = 1.3e-94
Identity = 198/411 (48.18%), Postives = 273/411 (66.42%), Query Frame = 1
Query: 52 SPSPLVAKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGF 111
+P P+ Q+YQPF PPPSPLP R+LD + +L +L +R+GLW EYAPLISSL ++GF
Sbjct: 62 TPPPMAPPGQLYQPFHPPPSPLPPSLRNLDLSERLQILRDRMGLWHEYAPLISSLSRDGF 121
Query: 112 TPPTIEEITGIGGVQQNTLVVGAQVRESLVQTINDA-DPDLIAAFDT-GGAELLYEIRLL 171
P +I+E TGI GV+QN LVV +QVR+SL+ A PDL+ FD+ GG E+LYE+R L
Sbjct: 122 NPSSIQEATGISGVEQNCLVVASQVRDSLLDDRAAAFPPDLLPYFDSLGGPEVLYELRFL 181
Query: 172 NAEKRAAAARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRL 231
NA +RA AAR+ + RL+ KG ++LARAMK FPR RG++GWE+F+ D P DCLAF +R
Sbjct: 182 NARQRADAARHAIGYRLEPKGVRELARAMKGFPRWRGEEGWEAFSKDSPADCLAFARFRQ 241
Query: 232 SREYSNMSEARTSALEDALKVAVTEEARSLIVRDLE---REGEGKDEAEEEIE-----AG 291
SRE ++ + R + LE AL+V TE R+ + +LE R+ G++E +EE E A
Sbjct: 242 SREAIDVQD-RVAELERALQVVETESGRARVELELERARRKAAGEEEVDEEGEEDDAAAS 301
Query: 292 VK--VPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRR 351
++ V VVRL+ GEVAEATTV++LPV +G + AP +++ GVV V+ W R
Sbjct: 302 LRPGVTVVRLRYGEVAEATTVILLPVVRETDGVAAMESAPRRAKTDVGLGVVEVDRAWAR 361
Query: 352 WVVLPGWEPIAGLGKGGVVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYL 411
W V+PGW P+A VVV D R LPWR++ EE +LV+A+RS+KEV +G Y+
Sbjct: 362 WAVVPGWGPVAEAADDAVVVELADGRRLPWRMS---DEEPVLVIANRSKKEV-VEEGVYV 421
Query: 412 TGATGNDGELKVQRGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
+G L V+RG +L E G+ + V++VVRPPKD +DD +SDE+WD
Sbjct: 422 ---LEREGRLVVERGKKLAEQGIAAAAAEVVIVVRPPKD-EDDMVSDEEWD 463
BLAST of Cp4.1LG04g01890 vs. TrEMBL
Match:
A0A0A0LY43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690280 PE=4 SV=1)
HSP 1 Score: 647.1 bits (1668), Expect = 1.6e-182
Identity = 343/455 (75.38%), Postives = 389/455 (85.49%), Query Frame = 1
Query: 1 MLSATAP-ATSLSAAAAHTTTTTTTFLLHTP---PLRLFLRRPPNLISASLNPYPSPSPL 60
MLS+T A SLS+ ++ TT+ LH P PLRLFLRR N ISA +NP S S L
Sbjct: 1 MLSSTITNANSLSSLSS--IAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINP--SSSSL 60
Query: 61 VAKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTI 120
AK QVYQPFRPPPSPLP QYRSLD GKL++L+NRLGLWFEYAPLISSL+QEGFTPP +
Sbjct: 61 AAKQQVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVL 120
Query: 121 EEITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAA 180
EEITGI GVQQN+ +VGAQVRESL+Q+ ND+DPD+IA+FDTGGAELLYEIRLL+ EKRAA
Sbjct: 121 EEITGISGVQQNSFIVGAQVRESLLQS-NDSDPDVIASFDTGGAELLYEIRLLSTEKRAA 180
Query: 181 AARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNM 240
AA+YIV+NRLD KGAQDLARAMKDFPRRRGDKGWE F+YD+ GDCLA+M+YRLSREY++
Sbjct: 181 AAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSS 240
Query: 241 SEARTSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAE 300
+E RT+ALE+ALKV VTE+AR LIV DLE +G+GKD EEEI A VKVPVVR+KIGEVAE
Sbjct: 241 TERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAE 300
Query: 301 ATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGK-G 360
ATTVVV+PVC EG KGVGEAPMEVRSEGEFGVVV E+GW RWVVLPGWEP+AGL K G
Sbjct: 301 ATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGG 360
Query: 361 GVVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGS 420
GVVVAF+DAR LPWRVNRWYKEE ILVVADRSR+EV AGDGFYL G G+LKV+RG+
Sbjct: 361 GVVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLMGGGDGGGDLKVERGN 420
Query: 421 ELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
LMEMG+KESLGTVLLVVRPP++ +DDQLSDEDWD
Sbjct: 421 ALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450
BLAST of Cp4.1LG04g01890 vs. TrEMBL
Match:
W9RQR4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024527 PE=4 SV=1)
HSP 1 Score: 541.6 bits (1394), Expect = 9.2e-151
Identity = 283/434 (65.21%), Postives = 337/434 (77.65%), Query Frame = 1
Query: 18 TTTTTTTFLLHTPPLRLFLRRPPNLISASL-NPYPSPSPLVAKPQVYQPFRPPPSPLPSQ 77
T+ T F P L + ISA+ NP+P PS + Q+YQPFRPPPSPLP+Q
Sbjct: 5 TSNTLKPFSSFHPSFLLLSKPSLKPISATFSNPFPPPS----QQQLYQPFRPPPSPLPNQ 64
Query: 78 YRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEITGIGGVQQNTLVVGAQV 137
+RSLD +L+VLA+RLGLWFEYAPLI SLIQEGFTPP++EE TGI G++QN LVV AQV
Sbjct: 65 FRSLDVKSRLEVLADRLGLWFEYAPLIPSLIQEGFTPPSLEEATGISGIEQNHLVVAAQV 124
Query: 138 RESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARYIVDNRLDGKGAQDLAR 197
R+SL+Q+ + DP +++AFD GGAELLYEIRLLNA++R+AAA YI N LD +G QDLAR
Sbjct: 125 RDSLIQS--NTDPAVVSAFDLGGAELLYEIRLLNAQQRSAAASYIAANGLDARGVQDLAR 184
Query: 198 AMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEARTSALEDALKVAVTEEA 257
+++DFPRRRGDKGWESF+Y PGDCLAFM++R SRE+ SE RT+ALE AL AVTE A
Sbjct: 185 SVRDFPRRRGDKGWESFDYTQPGDCLAFMYFRQSREHKKPSEQRTAALEQALSAAVTERA 244
Query: 258 RSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVG 317
+ ++ +L EGEG+ E EI V+VPVVRLKIGEVAEA+TV VLPVC E KG+
Sbjct: 245 KGRVLEELNAEGEGEITGEGEIGEEVRVPVVRLKIGEVAEASTVAVLPVCKAGERDKGLE 304
Query: 318 EAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVAFKDARALPWRVNRWYK 377
EAP E +EGEFGVVV E+GW RWVVLP WEP+AGLGKGGVVV+F DAR LPWR NRWYK
Sbjct: 305 EAPRECWTEGEFGVVVAEKGWARWVVLPAWEPVAGLGKGGVVVSFSDARVLPWRTNRWYK 364
Query: 378 EEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELMEMGLKESLGTVLLVVRPP 437
EEAILVVADR RKEV +GFYL G G+ G+LKV+RGS L E G++ESLGTV+LVVRPP
Sbjct: 365 EEAILVVADRDRKEVSVDNGFYLVG--GDGGDLKVERGSALKETGVEESLGTVVLVVRPP 424
Query: 438 KDMDDDQLSDEDWD 451
KD DDQLSDEDW+
Sbjct: 425 KDAVDDQLSDEDWE 430
BLAST of Cp4.1LG04g01890 vs. TrEMBL
Match:
M5WAU1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005554mg PE=4 SV=1)
HSP 1 Score: 541.2 bits (1393), Expect = 1.2e-150
Identity = 289/462 (62.55%), Postives = 354/462 (76.62%), Query Frame = 1
Query: 1 MLSATAPATS-LSAAAAHTTTTTTTFLL---------HTPPLRLFLRRPPNL--ISASLN 60
MLS TA S+ +T T T T LL H PPL +P +L ISA+L
Sbjct: 1 MLSVTANILKPFSSFNPNTNTNTNTNLLLFSTSFLNPHPPPL--LYPKPSSLKPISATLT 60
Query: 61 PYPSPSPLVAKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQ 120
P S + QVYQPFRPPPSP+P+++RSLDA G+L++LANRLGLW+E+APLI SL+Q
Sbjct: 61 PSSSSQ----QQQVYQPFRPPPSPVPAKFRSLDANGRLEILANRLGLWYEFAPLIPSLLQ 120
Query: 121 EGFTPPTIEEITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRL 180
EGFTPPTIEE+TGI GV+QN LVV AQVR+SLVQ + DP ++A FDTGG+ELLYEIRL
Sbjct: 121 EGFTPPTIEEVTGISGVEQNRLVVAAQVRDSLVQ--SKTDPKILAEFDTGGSELLYEIRL 180
Query: 181 LNAEKRAAAARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYR 240
L+ ++RAAAARYI++N+LD KG QDLAR+MKDFPRRRGDKGWESF+Y +PGDCL F++YR
Sbjct: 181 LSVQQRAAAARYIIENKLDAKGTQDLARSMKDFPRRRGDKGWESFDYAHPGDCLGFIYYR 240
Query: 241 LSREYSNMSEARTSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVR 300
+RE+ N SE RT+ALE ALKVA T++A+ +I+ DLE E + K+ E ++ V+VPVVR
Sbjct: 241 QAREHKNPSEPRTAALEQALKVAGTDKAKKIILTDLEGETDEKEGREGDVIDVVRVPVVR 300
Query: 301 LKIGEVAEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEP 360
LK GEVAE++ VV+LPVC +E K V EAP E SEGEFGVVV E+GW+RWVVLPGWEP
Sbjct: 301 LKFGEVAESSKVVILPVCRADEKDKEVLEAPWECSSEGEFGVVVAEKGWKRWVVLPGWEP 360
Query: 361 IAGLGKGGVVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGE 420
+ GLGKGGVVV+F DAR LPW+VNRWYKEE IL+VADRS+KEV A DGFYL G
Sbjct: 361 VVGLGKGGVVVSFSDARVLPWKVNRWYKEEPILLVADRSKKEVTADDGFYLAAVEGGGLG 420
Query: 421 LKVQRGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
KV RGS L E G+KESLGTV+++VRPP+D DDQLS+EDW+
Sbjct: 421 FKVVRGSALKETGVKESLGTVVMIVRPPRDETDDQLSEEDWE 454
BLAST of Cp4.1LG04g01890 vs. TrEMBL
Match:
B9I5M2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04210g PE=4 SV=1)
HSP 1 Score: 535.8 bits (1379), Expect = 5.0e-149
Identity = 280/444 (63.06%), Postives = 344/444 (77.48%), Query Frame = 1
Query: 11 LSAAAAHTTTTTTTFLLHTPPLRLFLRRPP----NLISASLNPYPSPSPLVAKPQVYQPF 70
L ++++ ++ FL P L L + P +S S PS P Q+YQPF
Sbjct: 12 LFLSSSNNKPFSSPFLSQQPLFILHLSKTPFKPTKTLSVSATRIPSSPP--PYQQLYQPF 71
Query: 71 RPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEITGIGGVQ 130
RPPPSP+PSQY+SLDA +L++L+NRLGLW+EYAPLI SL QEGFTPP+IEE TGI GV+
Sbjct: 72 RPPPSPIPSQYKSLDAPSRLEILSNRLGLWYEYAPLIPSLFQEGFTPPSIEEATGISGVE 131
Query: 131 QNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARYIVDNRL 190
QN LVVGAQVR+SLVQ ++ DP+++A+FD GGAELLYEIRLL+A +R+AAAR+IV N++
Sbjct: 132 QNRLVVGAQVRDSLVQ--SNTDPEIVASFDLGGAELLYEIRLLSATQRSAAARFIVVNKM 191
Query: 191 DGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEARTSALED 250
D KGAQDLARAMKDFPRRRGDK WESF+Y PGDCL+FM+YR SRE+ N SE+RT+AL+
Sbjct: 192 DTKGAQDLARAMKDFPRRRGDKFWESFDYVLPGDCLSFMYYRQSREHKNPSESRTNALQM 251
Query: 251 ALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTVVVLPVC 310
AL+VA +E+A+S I+++LE GE K+ AE E GV+VPVVRLKIGEVAEAT+VVVLPVC
Sbjct: 252 ALEVAESEKAKSAILKELEGGGERKERAEGETADGVRVPVVRLKIGEVAEATSVVVLPVC 311
Query: 311 NGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVAFKDARA 370
E+G + + EAP E + +GEFGVVV E+ W RWVVLPGWEP+ GLG+GGV VAF DAR
Sbjct: 312 RSEDGERKIVEAPWECKGQGEFGVVVAEKAWERWVVLPGWEPVLGLGRGGVAVAFPDARV 371
Query: 371 LPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELMEMGLKESL 430
LPW+ NRWYKEE+ILVVADR KEV+A DGFYL G G+ KV+RGS L E + E L
Sbjct: 372 LPWKANRWYKEESILVVADRGSKEVKADDGFYLVTLDGAGGDFKVERGSALKERNVVECL 431
Query: 431 GTVLLVVRPPKDMDDDQLSDEDWD 451
GTVLLVVRPP+ DDQLSDEDW+
Sbjct: 432 GTVLLVVRPPRYETDDQLSDEDWE 451
BLAST of Cp4.1LG04g01890 vs. TrEMBL
Match:
A0A0S3SQ12_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G157600 PE=4 SV=1)
HSP 1 Score: 535.8 bits (1379), Expect = 5.0e-149
Identity = 287/452 (63.50%), Postives = 351/452 (77.65%), Query Frame = 1
Query: 6 APATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNL--ISASLNPYP----SPSPLVAK 65
+P+ + + + FL+ +P F R ++ ISA +NPY P P +
Sbjct: 5 SPSVTANTLSLKPNNLNDLFLISSPS---FTNRRHSIKPISAIINPYSFRNQQPLPPPPQ 64
Query: 66 PQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEI 125
QVYQPFRPPP PLPSQY +LD AG++D+LANRLGLW++YAPLISSLI+EGF+PPTIEE
Sbjct: 65 QQVYQPFRPPPEPLPSQYGNLDIAGRIDILANRLGLWYQYAPLISSLIREGFSPPTIEET 124
Query: 126 TGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAAR 185
TGI GV+QN L+V AQVR+SLV++ +ADP+L+AAF+TGGAELLYEIRLL+ +R AAA
Sbjct: 125 TGISGVEQNRLIVAAQVRDSLVES--NADPELLAAFETGGAELLYEIRLLSTSQRVAAAL 184
Query: 186 YIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEA 245
++V+NR DGK AQ+LARAMKDFP RRGDKGWESF+Y PGDCL+FM+YR RE+ N SE
Sbjct: 185 FLVENRCDGKAAQELARAMKDFPSRRGDKGWESFDYTLPGDCLSFMYYRQGREHRNPSEQ 244
Query: 246 RTSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATT 305
R+ ALE AL+VA TE AR++++ +LER GE KDE EE++E +VPVVRL+IGEVAEA++
Sbjct: 245 RSLALEQALRVAGTERARNVVLEELERSGEEKDE-EEDVEGVTRVPVVRLRIGEVAEASS 304
Query: 306 VVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVV 365
VVVLPVC +E + V EAP E RSEGEFGVVV E+GW RWVVLPGW+P+ GLGKGGVVV
Sbjct: 305 VVVLPVCAADE--REVLEAPFECRSEGEFGVVVSEKGWGRWVVLPGWDPLVGLGKGGVVV 364
Query: 366 AFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGE-LKVQRGSELM 425
+F DAR LPW+ NRWYKEEAILVVADRS+ EV A DGFYL G DG+ LKV+RG L
Sbjct: 365 SFADARVLPWKANRWYKEEAILVVADRSKIEVGADDGFYL--VNGGDGKGLKVERGFTLK 424
Query: 426 EMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
E +SLGTVLLVVRPPK+ DDDQLSDEDW+
Sbjct: 425 EKDFTQSLGTVLLVVRPPKEEDDDQLSDEDWE 446
BLAST of Cp4.1LG04g01890 vs. TAIR10
Match:
AT3G04550.1 (AT3G04550.1 unknown protein)
HSP 1 Score: 446.0 bits (1146), Expect = 2.7e-125
Identity = 250/458 (54.59%), Postives = 333/458 (72.71%), Query Frame = 1
Query: 10 SLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLIS----ASLNPYPSPSPLV-----AKP 69
SL + + T +TT L T P+ + P +S AS+ P S + ++ A+
Sbjct: 3 SLKSLISSPFTQSTTHGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQ 62
Query: 70 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 129
Q+YQPFRPP SP+P+Q+RSLD+AGK+++LA R+ LWFEYAPLISSL +GFTPPTIEE+T
Sbjct: 63 QLYQPFRPPSSPIPTQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELT 122
Query: 130 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 189
GI ++QN L+VGAQVR+S++Q+I+ +P+LI+AFDTGGAELLYEIRLL+ +R AAA +
Sbjct: 123 GISSIEQNRLIVGAQVRDSILQSIH--EPELISAFDTGGAELLYEIRLLSTTQRVAAATF 182
Query: 190 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 249
I+D +D KGAQDLARA+KD+P RRGD GW F+Y+ PGDCL+F++YR SRE N S+ R
Sbjct: 183 IIDRNIDSKGAQDLARAIKDYPNRRGDVGWLDFDYNLPGDCLSFLYYRQSRENKNPSDQR 242
Query: 250 TSALEDALKVAVTEEARSLIVRDL------EREGEGKDEAEEEIEAGVKVPVVRLKIGEV 309
TS L AL VA +E+A++ + +L E+E E K + EEE++A +++PVVRLK GEV
Sbjct: 243 TSMLLQALGVAESEKAKNRLNTELYGDKEAEKEKE-KKKKEEEVKA-IRIPVVRLKFGEV 302
Query: 310 AEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGK 369
AEAT+VVVLPVC EEG K + EAPME+ + G+F VV E+GW+RWVVLP W P+A +GK
Sbjct: 303 AEATSVVVLPVCKAEEGEKKILEAPMEIIAGGDFKVVEAEKGWKRWVVLPSWNPVAAIGK 362
Query: 370 GGVVVAFKDAR-ALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQR 429
GGV V+F+D R LPW KEE +LVVADR R VEA DG+YL A + LK+++
Sbjct: 363 GGVAVSFRDDRKVLPWD----GKEEPLLVVADRVRNVVEADDGYYLVVA---ENGLKLEK 422
Query: 430 GSELMEMGLKESLGTVLLVVRPPKDMDDD-QLSDEDWD 451
GS+L +KESLG V+LVVRPP++ DDD Q S ++WD
Sbjct: 423 GSDLKAREVKESLGMVVLVVRPPREDDDDWQTSHQNWD 449
BLAST of Cp4.1LG04g01890 vs. TAIR10
Match:
AT5G28500.1 (AT5G28500.1 unknown protein)
HSP 1 Score: 444.9 bits (1143), Expect = 5.9e-125
Identity = 261/452 (57.74%), Postives = 327/452 (72.35%), Query Frame = 1
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLS TA T+LS++ T + T +T P+ R+P I+++L P S K
Sbjct: 1 MLSLTA--TTLSSSIF--TQSKTHGFFNTRPV---YRKPFTTITSALIP-ASNRQAPPKQ 60
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
Q+YQPFRPPPSP+P ++RSLD AGK++VLA+RLGLWFEYAPLISSL EGFTPP+IEE+T
Sbjct: 61 QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GI GV+QN+L+VGAQVR+SLVQ+ A P+LIAAFDT GAELLYEIRLLN +R AAA Y
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS--GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEY 180
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
IVD+ D KGA DLARA+KDFP RRGD G F+Y+ PGDCL+FM YR SRE+ + SE R
Sbjct: 181 IVDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIR 240
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
T+ LE AL+ AVTE+A+ ++R+L E E + EEEI+ ++VPVVRL+ GEVA A++V
Sbjct: 241 TTLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEIKI-IRVPVVRLRFGEVAGASSV 300
Query: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
VVLPVC EEG + + EAPME S GEFGVV E+ W RWVVLPGW+P+ + K GV V+
Sbjct: 301 VVLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK-GVAVS 360
Query: 361 FKDAR-ALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELME 420
F D R LPW K EAI+VV DR +K VEA +G+Y DG +K+ RG L E
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVA--DGGMKLDRGLVLKE 420
Query: 421 MGLKESLGTVLLVVRPPKDMDDD-QLSDEDWD 451
G+ ESLG V+LVVRPP+D DD+ Q++DEDWD
Sbjct: 421 KGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434
BLAST of Cp4.1LG04g01890 vs. NCBI nr
Match:
gi|659125493|ref|XP_008462710.1| (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo])
HSP 1 Score: 651.7 bits (1680), Expect = 9.1e-184
Identity = 348/458 (75.98%), Postives = 389/458 (84.93%), Query Frame = 1
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTP---PLRLFLRRPPNLISASLNPYPSPSPLV 60
MLS+T + S + + TT LH P PLRLFLRR N ISA +NP SPSPL
Sbjct: 1 MLSSTITNAN-SLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINP--SPSPLA 60
Query: 61 AKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIE 120
AK QVYQPFRPPPSPLP QYRSLD GKL+VL+NRLGLWF+YAPLISSL+QEGFTPPT+E
Sbjct: 61 AKQQVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLE 120
Query: 121 EITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAA 180
EITGI GVQQNT VVGAQVRESLVQ+ ND+DPD+IA+FDT GAELLYEIRLL+ EKR AA
Sbjct: 121 EITGISGVQQNTFVVGAQVRESLVQS-NDSDPDVIASFDTSGAELLYEIRLLSTEKRVAA 180
Query: 181 ARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMS 240
A+YIV+NRLD KGAQDLARA+KDFPRR+GD+GWE F+YD GDCLA+M+YRLSREY+N S
Sbjct: 181 AKYIVENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSS 240
Query: 241 EARTSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEA 300
E RT+ALE+ALKV VTE+AR+LIV DLER+G+GKD EEE AGV+VPVVRLKIGEVAEA
Sbjct: 241 ERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEA 300
Query: 301 TTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGK-GG 360
T VVV+PVC EG KGVGEAPMEVRSEG+FGVVV E+GW RWVVLPGWEP+AGL K GG
Sbjct: 301 TKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGG 360
Query: 361 VVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGAT--GND--GELKVQ 420
VVVAFKDAR LPWRVNRWYKEE ILVVADRSRKEV AGDGFYL G T G D GELKV+
Sbjct: 361 VVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVE 420
Query: 421 RGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
RG+ L EMG+KESLGTV+LVVRPPK+M+DDQLSDEDWD
Sbjct: 421 RGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454
BLAST of Cp4.1LG04g01890 vs. NCBI nr
Match:
gi|449449643|ref|XP_004142574.1| (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis sativus])
HSP 1 Score: 647.1 bits (1668), Expect = 2.2e-182
Identity = 343/455 (75.38%), Postives = 389/455 (85.49%), Query Frame = 1
Query: 1 MLSATAP-ATSLSAAAAHTTTTTTTFLLHTP---PLRLFLRRPPNLISASLNPYPSPSPL 60
MLS+T A SLS+ ++ TT+ LH P PLRLFLRR N ISA +NP S S L
Sbjct: 1 MLSSTITNANSLSSLSS--IAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINP--SSSSL 60
Query: 61 VAKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTI 120
AK QVYQPFRPPPSPLP QYRSLD GKL++L+NRLGLWFEYAPLISSL+QEGFTPP +
Sbjct: 61 AAKQQVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVL 120
Query: 121 EEITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAA 180
EEITGI GVQQN+ +VGAQVRESL+Q+ ND+DPD+IA+FDTGGAELLYEIRLL+ EKRAA
Sbjct: 121 EEITGISGVQQNSFIVGAQVRESLLQS-NDSDPDVIASFDTGGAELLYEIRLLSTEKRAA 180
Query: 181 AARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNM 240
AA+YIV+NRLD KGAQDLARAMKDFPRRRGDKGWE F+YD+ GDCLA+M+YRLSREY++
Sbjct: 181 AAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSS 240
Query: 241 SEARTSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAE 300
+E RT+ALE+ALKV VTE+AR LIV DLE +G+GKD EEEI A VKVPVVR+KIGEVAE
Sbjct: 241 TERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAE 300
Query: 301 ATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGK-G 360
ATTVVV+PVC EG KGVGEAPMEVRSEGEFGVVV E+GW RWVVLPGWEP+AGL K G
Sbjct: 301 ATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGG 360
Query: 361 GVVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGS 420
GVVVAF+DAR LPWRVNRWYKEE ILVVADRSR+EV AGDGFYL G G+LKV+RG+
Sbjct: 361 GVVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLMGGGDGGGDLKVERGN 420
Query: 421 ELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
LMEMG+KESLGTVLLVVRPP++ +DDQLSDEDWD
Sbjct: 421 ALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450
BLAST of Cp4.1LG04g01890 vs. NCBI nr
Match:
gi|657958419|ref|XP_008370732.1| (PREDICTED: rubisco accumulation factor 1, chloroplastic-like [Malus domestica])
HSP 1 Score: 553.9 bits (1426), Expect = 2.6e-154
Identity = 291/453 (64.24%), Postives = 357/453 (78.81%), Query Frame = 1
Query: 1 MLSATAPATSLSAAAAHTTT--TTTTFLLHTPPLRLFLR-RPPNLISASLNPYPSPSPLV 60
MLS T + ++ TTT ++T+FL PPL L + P ISA+L P S S
Sbjct: 1 MLSLTVNSLKPFSSFNPTTTFLSSTSFLNPHPPLLLHHKPSSPKPISATLTP--SSSTQQ 60
Query: 61 AKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIE 120
+ QVYQPFRPPPSP+PS++RSLDA G+L++LANRLGLWFEYAPLI SL QEGFTPPTIE
Sbjct: 61 QQKQVYQPFRPPPSPIPSKFRSLDANGRLEILANRLGLWFEYAPLIPSLTQEGFTPPTIE 120
Query: 121 EITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAA 180
EITGI GV+QN LVV AQVR+SLVQ+ + DP++++ FD GG+ELLYEIRLL+ ++RAAA
Sbjct: 121 EITGISGVEQNRLVVAAQVRDSLVQS--NTDPEIVSEFDLGGSELLYEIRLLSVQQRAAA 180
Query: 181 ARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMS 240
+R+I++N+LDGKGAQDLAR+MKDFPRRR +KGWESF+Y PGDCL FM++R RE+ N S
Sbjct: 181 SRFIIENKLDGKGAQDLARSMKDFPRRRTEKGWESFDYASPGDCLGFMYFRQGREHKNPS 240
Query: 241 EARTSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEA 300
E RT+ALE ALKVA T++A+ +I+++LE E E K+E EE++ AGV+VPVVRLK GEVAE+
Sbjct: 241 EPRTAALEQALKVAQTDKAKKVILKELEGESEDKEEEEEDVAAGVRVPVVRLKFGEVAES 300
Query: 301 TTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGV 360
T VV+LPVC EE K V EAP E SEGE GV+V E+GW+RWVVLPGWEP+ LGKGGV
Sbjct: 301 TKVVILPVCRAEEKDKEVMEAPWECTSEGELGVMVAEKGWKRWVVLPGWEPVVSLGKGGV 360
Query: 361 VVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSEL 420
VV+F DAR LPW+ NRWYKEE ILVVADRS++EVEA DGFYL G KV RGS L
Sbjct: 361 VVSFSDARVLPWKANRWYKEEPILVVADRSKREVEADDGFYLAAXDGEGLGFKVVRGSAL 420
Query: 421 MEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
E G++ESLGTV+L+VRPP+D DDQLSDEDW+
Sbjct: 421 KEAGVEESLGTVVLIVRPPRDETDDQLSDEDWE 449
BLAST of Cp4.1LG04g01890 vs. NCBI nr
Match:
gi|1009117834|ref|XP_015875531.1| (PREDICTED: rubisco accumulation factor 1, chloroplastic-like [Ziziphus jujuba])
HSP 1 Score: 547.0 bits (1408), Expect = 3.1e-152
Identity = 295/462 (63.85%), Postives = 356/462 (77.06%), Query Frame = 1
Query: 1 MLSATAPATSLSAAAAHTTT-------TTTTFLLHTPPLRLFLRRP---PNLISASLNPY 60
MLS TA + S++ ++++FL PL + +P P ISA+LNP
Sbjct: 1 MLSLTANSVKPSSSFISNNNNNNNKPFSSSSFLNAHRPLLISHSKPLPSPKPISATLNPS 60
Query: 61 PSPS--PLVAKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQ 120
P+PS P + +YQPFRPPPSPLPSQ+R+LD A +++VLANRLGLWF+YAPLI +LIQ
Sbjct: 61 PTPSSSPQHQQQNLYQPFRPPPSPLPSQFRNLDTASRIEVLANRLGLWFDYAPLIPTLIQ 120
Query: 121 EGFTPPTIEEITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRL 180
EGF+PP IEE TGI GV+QN LVV A+VR+SLVQ+ DP++++AFD GGAELLYEIRL
Sbjct: 121 EGFSPPFIEEATGISGVEQNCLVVAAKVRDSLVQS--KIDPEIVSAFDLGGAELLYEIRL 180
Query: 181 LNAEKRAAAARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYR 240
LN ++R AAARYI +NRLD KGAQDLARAMKDFPRRRGD+GWESF+Y PGDCL+FM YR
Sbjct: 181 LNGQQRFAAARYIAENRLDAKGAQDLARAMKDFPRRRGDRGWESFDYALPGDCLSFMFYR 240
Query: 241 LSREYSNMSEARTSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVR 300
SRE+ N SE RT+ALE AL+VA +E+A+S ++R+LER GE KD E +E GV+VP+VR
Sbjct: 241 QSREHKNPSEQRTAALEQALEVAESEKAKSRVLRELERGGEAKDGVEGNVEEGVRVPIVR 300
Query: 301 LKIGEVAEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEP 360
+ IGEVAEA++VVVLPVC EE K V EAP E R+EGEFGVV+ E+GW RWVVLPGWEP
Sbjct: 301 MMIGEVAEASSVVVLPVCRAEEREKEVLEAPWECRNEGEFGVVLAEKGWTRWVVLPGWEP 360
Query: 361 IAGLGKGGVVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGE 420
+ GL KGGVVV+F DARALPWR NRWYKEE ILVVADRS+KEVEA GFYL D
Sbjct: 361 VVGLEKGGVVVSFVDARALPWRTNRWYKEEPILVVADRSKKEVEADGGFYLVAV---DDG 420
Query: 421 LKVQRGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
LKV RGS L E +KESLGTV+LV+RPPK+ DDQLSDEDW+
Sbjct: 421 LKVVRGSALKEKDVKESLGTVVLVIRPPKEDIDDQLSDEDWE 457
BLAST of Cp4.1LG04g01890 vs. NCBI nr
Match:
gi|764596079|ref|XP_011465980.1| (PREDICTED: LOW QUALITY PROTEIN: rubisco accumulation factor 1, chloroplastic [Fragaria vesca subsp. vesca])
HSP 1 Score: 546.2 bits (1406), Expect = 5.4e-152
Identity = 292/451 (64.75%), Postives = 350/451 (77.61%), Query Frame = 1
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPS-PSPLVAK 60
MLS T+ ++L + T+TTT H PP L + ISAS+ PS P P
Sbjct: 1 MLSLTS--STLKPTFSPFTSTTTFLNPHQPPRLLHPKPSLKPISASIQHLPSHPKP---N 60
Query: 61 PQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEI 120
QVYQPFRPPPSP+P QY SLD G+L++LANRLGLW+EYAPLI SL+Q+GFTPPTIEEI
Sbjct: 61 QQVYQPFRPPPSPIPEQYSSLDVNGRLEILANRLGLWYEYAPLIPSLLQQGFTPPTIEEI 120
Query: 121 TGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAAR 180
TGI GV+QN LVV AQVRESL+ + DP+++A FDTGG+ELLYEIRLL+ ++RAAAAR
Sbjct: 121 TGISGVEQNRLVVAAQVRESLIH--SKTDPEIMAEFDTGGSELLYEIRLLSVQQRAAAAR 180
Query: 181 YIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEA 240
+IV+ +LD KGA DLARA KDFPRRRGDKGWESF+Y PGDCLAFM+YR +RE+++MSE
Sbjct: 181 FIVEKKLDAKGAGDLARATKDFPRRRGDKGWESFDYTNPGDCLAFMYYRQAREHNDMSET 240
Query: 241 RTSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATT 300
RT ALE+ALKV +E+ARS+IVR+L EG + EEE+ A VKVPVVRLK GEV E++
Sbjct: 241 RTDALEEALKVVGSEKARSVIVREL--EGASVRDEEEEVVAVVKVPVVRLKFGEVGESSR 300
Query: 301 VVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVV 360
VVVLPVC EE K V EAP E SEGE GVVV E+GW+RWVVLPGWEP+ GLGKGGVVV
Sbjct: 301 VVVLPVCKAEEKDKEVMEAPWECESEGELGVVVAEKGWKRWVVLPGWEPVVGLGKGGVVV 360
Query: 361 AFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELME 420
+F DAR LPW+VNRWYKEE ILVVADRS+KEVEA DGFYL G KV+RGS L E
Sbjct: 361 SFSDARVLPWKVNRWYKEEPILVVADRSKKEVEADDGFYLAAVDGEGLGFKVERGSALKE 420
Query: 421 MGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
G+KESLGTV+L+VRPPKD +++L++EDW+
Sbjct: 421 AGVKESLGTVVLIVRPPKDDTENELAEEDWE 442
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| RAF2_ARATH | 4.7e-124 | 54.59 | Rubisco accumulation factor 2, chloroplastic OS=Arabidopsis thaliana GN=RAF2 PE=... | [more] |
| RAF1_ARATH | 1.1e-123 | 57.74 | Rubisco accumulation factor 1, chloroplastic OS=Arabidopsis thaliana GN=RAF1 PE=... | [more] |
| RAF1_ORYSJ | 1.2e-95 | 44.77 | Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=... | [more] |
| RAF1_MAIZE | 1.3e-94 | 48.18 | Rubisco accumulation factor 1, chloroplastic OS=Zea mays GN=RAF1 PE=1 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LY43_CUCSA | 1.6e-182 | 75.38 | Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690280 PE=4 SV=1 | [more] |
| W9RQR4_9ROSA | 9.2e-151 | 65.21 | Uncharacterized protein OS=Morus notabilis GN=L484_024527 PE=4 SV=1 | [more] |
| M5WAU1_PRUPE | 1.2e-150 | 62.55 | Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005554mg PE=4 SV=1 | [more] |
| B9I5M2_POPTR | 5.0e-149 | 63.06 | Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04210g PE=4 SV=1 | [more] |
| A0A0S3SQ12_PHAAN | 5.0e-149 | 63.50 | Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G157600 PE=... | [more] |
