CsGy1G032240 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G032240
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	rubisco accumulation factor 1, chloroplastic
Location	Chr1 : 31496687 .. 31497754 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGAGTACGCCCCCTCATTTCCTCCTTGCTTCAAGAGGGCTTCACTCCTCCTGTTCTAGAAGAAATCACCGGAATTAGCGGTGTTCAGCAGAATAGCTTCATCGTTGGCGCTCAGGTTCGCGAATCCCTACTTCAGTCCAATGACTCCGATCCAGATGTAATCGCCTCCTTCGATACTGGTGGTGCGGAGTTGCTCTATGAAATTCGGCTTCTAAGTACTGAGAAACGCGCTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCCCAGGATCTGGCTCGAGCAATGAAGGATTTTCCTCGACGAAGAGGGGACAAAGGTTGGGAGTATTTTGATTACGATTTTGCTGGGGATTGTTTGGCGTATATGTATTACAGGTTGAGTAGAGAGTACAATAGTTCAACGGAGAGGAGGACGGCGGCGTTGGAGGAGGCGTTGAAAGTGGTAGTGACGGAGAAGGCGAGGGATCTGATTGTTGGGGATTTGGAGGGGAAAGGAGATGGGAAGGACGGGGTTGAAGAGGAAATTGGAGCGGCAGTTAAAGTTCCGGTGGTGCGGATGAAGATTGGGGAGGTTGCGGAGGCGACGACAGTGGTGGTGATGCCGGTGTGCAAGGCAGGGGAAGGGGAAAAGGGAGTTGGAGAGGCGCCAATGGAGGTGAGAAGCGAGGGAGAATTCGGGGTTGTGGTGGCGGAAAAGGGGTGGAGCAGGTGGGTGGTGCTACCGGGATGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGTGGACTAGTAGTGGCGTTTGAGGATGCGAGGGTTCTGCCATGGCGAGTGAACAGGTGGTACAAGGAGGAGCCAATTCTGGTAGTGGCTGATCGGAGTAGAAGGGAGGTGGTGGCGGGAGATGGATTTTATCTGATGGGTGGAGGCGATGGAGGTGGGGATTTGAAGGTGGAGAGAGGGAATGCATTGATGGAAATGGGAGTGAAGGAGAGCTTAGGAACAGTATTGTTGGTGGTTAGGCCACCAAGGGAGACGGAAGATGATCAATTGAGTGATGAAGATTGGGACTAA

mRNA sequence

ATGGTTCGAGTACGCCCCCTCATTTCCTCCTTGCTTCAAGAGGGCTTCACTCCTCCTGTTCTAGAAGAAATCACCGGAATTAGCGGTGTTCAGCAGAATAGCTTCATCGTTGGCGCTCAGGTTCGCGAATCCCTACTTCAGTCCAATGACTCCGATCCAGATGTAATCGCCTCCTTCGATACTGGTGGTGCGGAGTTGCTCTATGAAATTCGGCTTCTAAGTACTGAGAAACGCGCTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCCCAGGATCTGGCTCGAGCAATGAAGGATTTTCCTCGACGAAGAGGGGACAAAGGTTGGGAGTATTTTGATTACGATTTTGCTGGGGATTGTTTGGCGTATATGTATTACAGGTTGAGTAGAGAGTACAATAGTTCAACGGAGAGGAGGACGGCGGCGTTGGAGGAGGCGTTGAAAGTGGTAGTGACGGAGAAGGCGAGGGATCTGATTGTTGGGGATTTGGAGGGGAAAGGAGATGGGAAGGACGGGGTTGAAGAGGAAATTGGAGCGGCAGTTAAAGTTCCGGTGGTGCGGATGAAGATTGGGGAGGTTGCGGAGGCGACGACAGTGGTGGTGATGCCGGTGTGCAAGGCAGGGGAAGGGGAAAAGGGAGTTGGAGAGGCGCCAATGGAGGTGAGAAGCGAGGGAGAATTCGGGGTTGTGGTGGCGGAAAAGGGGTGGAGCAGGTGGGTGGTGCTACCGGGATGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGTGGACTAGTAGTGGCGTTTGAGGATGCGAGGGTTCTGCCATGGCGAGTGAACAGGTGGTACAAGGAGGAGCCAATTCTGGTAGTGGCTGATCGGAGTAGAAGGGAGGTGGTGGCGGGAGATGGATTTTATCTGATGGGTGGAGGCGATGGAGGTGGGGATTTGAAGGTGGAGAGAGGGAATGCATTGATGGAAATGGGAGTGAAGGAGAGCTTAGGAACAGTATTGTTGGTGGTTAGGCCACCAAGGGAGACGGAAGATGATCAATTGAGTGATGAAGATTGGGACTAA

Coding sequence (CDS)

ATGGTTCGAGTACGCCCCCTCATTTCCTCCTTGCTTCAAGAGGGCTTCACTCCTCCTGTTCTAGAAGAAATCACCGGAATTAGCGGTGTTCAGCAGAATAGCTTCATCGTTGGCGCTCAGGTTCGCGAATCCCTACTTCAGTCCAATGACTCCGATCCAGATGTAATCGCCTCCTTCGATACTGGTGGTGCGGAGTTGCTCTATGAAATTCGGCTTCTAAGTACTGAGAAACGCGCTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCCCAGGATCTGGCTCGAGCAATGAAGGATTTTCCTCGACGAAGAGGGGACAAAGGTTGGGAGTATTTTGATTACGATTTTGCTGGGGATTGTTTGGCGTATATGTATTACAGGTTGAGTAGAGAGTACAATAGTTCAACGGAGAGGAGGACGGCGGCGTTGGAGGAGGCGTTGAAAGTGGTAGTGACGGAGAAGGCGAGGGATCTGATTGTTGGGGATTTGGAGGGGAAAGGAGATGGGAAGGACGGGGTTGAAGAGGAAATTGGAGCGGCAGTTAAAGTTCCGGTGGTGCGGATGAAGATTGGGGAGGTTGCGGAGGCGACGACAGTGGTGGTGATGCCGGTGTGCAAGGCAGGGGAAGGGGAAAAGGGAGTTGGAGAGGCGCCAATGGAGGTGAGAAGCGAGGGAGAATTCGGGGTTGTGGTGGCGGAAAAGGGGTGGAGCAGGTGGGTGGTGCTACCGGGATGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGTGGACTAGTAGTGGCGTTTGAGGATGCGAGGGTTCTGCCATGGCGAGTGAACAGGTGGTACAAGGAGGAGCCAATTCTGGTAGTGGCTGATCGGAGTAGAAGGGAGGTGGTGGCGGGAGATGGATTTTATCTGATGGGTGGAGGCGATGGAGGTGGGGATTTGAAGGTGGAGAGAGGGAATGCATTGATGGAAATGGGAGTGAAGGAGAGCTTAGGAACAGTATTGTTGGTGGTTAGGCCACCAAGGGAGACGGAAGATGATCAATTGAGTGATGAAGATTGGGACTAA

Protein sequence

MVRVRPLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLMGGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD

Homology

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BLAST of CsGy1G032240 vs. NCBI nr
Match: XP_004142574.1 (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis sativus] >KGN66790.1 hypothetical protein Csa_1G690280 [Cucumis sativus])

HSP 1 Score: 685.3 bits (1767), Expect = 1.1e-193
Identity = 349/350 (99.71%), Postives = 350/350 (100.00%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE
Sbjct: 101 PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 160

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC
Sbjct: 161 LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 220

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 185
           LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA
Sbjct: 221 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 280

Query: 186 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 245
           VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV
Sbjct: 281 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 340

Query: 246 VLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM 305
           VLPGWEPVAGLVKGGG+VVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM
Sbjct: 341 VLPGWEPVAGLVKGGGVVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM 400

Query: 306 GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 356
           GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD
Sbjct: 401 GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450

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BLAST of CsGy1G032240 vs. NCBI nr
Match: XP_008462710.1 (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo])

HSP 1 Score: 632.9 bits (1631), Expect = 6.7e-178
Identity = 321/354 (90.68%), Postives = 339/354 (95.76%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLISSLLQEGFTPP LEEITGISGVQQN+F+VGAQVRESL+QSNDSDPDVIASFDT GAE
Sbjct: 101 PLISSLLQEGFTPPTLEEITGISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAE 160

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLLSTEKR AAAKYIVENRLDSKGAQDLARA+KDFPRR+GD+GWE FDYD AGDC
Sbjct: 161 LLYEIRLLSTEKRVAAAKYIVENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDC 220

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 185
           LAYMYYRLSREYN+S+ERRTAALEEALKVVVTEKAR+LIVGDLE KGDGKDGVEEE GA 
Sbjct: 221 LAYMYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAG 280

Query: 186 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 245
           V+VPVVR+KIGEVAEAT VVVMPVCKAGEGEKGVGEAPMEVRSEG+FGVVVAEKGWSRWV
Sbjct: 281 VRVPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWV 340

Query: 246 VLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM 305
           VLPGWEPVAGLVKGGG+VVAF+DARVLPWRVNRWYKEEPILVVADRSR+EVVAGDGFYLM
Sbjct: 341 VLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLM 400

Query: 306 ----GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 356
               GGGDGGG+LKVERGNAL EMGVKESLGTV+LVVRPP+E EDDQLSDEDWD
Sbjct: 401 GGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

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BLAST of CsGy1G032240 vs. NCBI nr
Match: XP_022933155.1 (rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 551.6 bits (1420), Expect = 2.0e-153
Identity = 279/351 (79.49%), Postives = 316/351 (90.03%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQS-NDSDPDVIASFDTGGA 65
           PLISSL+QEGFTPP +EEITGI GVQQN+ +VGAQVRESL+Q+ ND+DPD+IA+FDTGGA
Sbjct: 98  PLISSLIQEGFTPPTIEEITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGA 157

Query: 66  ELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGD 125
           ELLYEIRLL+ EKRAAAA+YIVENRLD KGAQDLARAMKDFPRRRGDKGWE F+YD+ GD
Sbjct: 158 ELLYEIRLLNAEKRAAAARYIVENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGD 217

Query: 126 CLAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGA 185
           CLA+M+YRLSREY++ +E RTAALE+ALKV VTE+AR LIV DLE +G+GKD VEEEI A
Sbjct: 218 CLAFMHYRLSREYSNMSEARTAALEDALKVAVTEEARSLIVRDLEREGEGKDEVEEEIEA 277

Query: 186 AVKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRW 245
            V+VPVVR+KIGEVAEATTVVV+PVC   EG KGVGEAPMEVRSEGEFGVVVAE+GW RW
Sbjct: 278 GVRVPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVAEEGWRRW 337

Query: 246 VVLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL 305
           VVLPGWEP+AGL K GG+VVAF+DAR LPWRVNRWYKEE ILVVADRSR+EV AGDGFYL
Sbjct: 338 VVLPGWEPIAGLGK-GGVVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYL 397

Query: 306 MGGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 356
            G     G+LKV+RG+ LMEMG+KESLGTVLLVVRPP++ +DDQLSDEDWD
Sbjct: 398 TGATGSDGELKVQRGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 447

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BLAST of CsGy1G032240 vs. NCBI nr
Match: XP_023531170.1 (rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 547.4 bits (1409), Expect = 3.7e-152
Identity = 276/351 (78.63%), Postives = 314/351 (89.46%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQS-NDSDPDVIASFDTGGA 65
           PLISSL+QEGFTPP +EEITGI GVQQN+ +VGAQVRESL+Q+ ND+DPD+IA+FDTGGA
Sbjct: 101 PLISSLIQEGFTPPTIEEITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGA 160

Query: 66  ELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGD 125
           ELLYEIRLL+ EKRAAAA+YIV+NRLD KGAQDLARAMKDFPRRRGDKGWE F+YD+ GD
Sbjct: 161 ELLYEIRLLNAEKRAAAARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGD 220

Query: 126 CLAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGA 185
           CLA+M+YRLSREY++ +E RT+ALE+ALKV VTE+AR LIV DLE +G+GKD  EEEI A
Sbjct: 221 CLAFMHYRLSREYSNMSEARTSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEA 280

Query: 186 AVKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRW 245
            VKVPVVR+KIGEVAEATTVVV+PVC   EG KGVGEAPMEVRSEGEFGVVV E+GW RW
Sbjct: 281 GVKVPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRW 340

Query: 246 VVLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL 305
           VVLPGWEP+AGL K GG+VVAF+DAR LPWRVNRWYKEE ILVVADRSR+EV AGDGFYL
Sbjct: 341 VVLPGWEPIAGLGK-GGVVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYL 400

Query: 306 MGGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 356
            G     G+LKV+RG+ LMEMG+KESLGTVLLVVRPP++ +DDQLSDEDWD
Sbjct: 401 TGATGNDGELKVQRGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 450

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BLAST of CsGy1G032240 vs. NCBI nr
Match: XP_022965491.1 (rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 543.5 bits (1399), Expect = 5.3e-151
Identity = 274/351 (78.06%), Postives = 313/351 (89.17%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQS-NDSDPDVIASFDTGGA 65
           PLISSL+QEGFTPP +EEITGI GVQQN+ +VGAQVRESL+Q+ ND+DPD+IA+FDTGGA
Sbjct: 131 PLISSLIQEGFTPPTIEEITGIGGVQQNTLVVGAQVRESLVQTINDTDPDLIAAFDTGGA 190

Query: 66  ELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGD 125
           ELLYEIRLL+ EKRAAAA+YI+ENRLD KGAQDLARAMKDFPRRRGDKGWE F+YD+ GD
Sbjct: 191 ELLYEIRLLNAEKRAAAARYIMENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGD 250

Query: 126 CLAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGA 185
           CLA+M+YRLSREY++ +E RTAAL +ALKV VTE+AR LIV DLE +G+GKDG EEEI A
Sbjct: 251 CLAFMHYRLSREYSNMSEARTAALADALKVAVTEEARSLIVRDLEREGEGKDGAEEEIEA 310

Query: 186 AVKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRW 245
            V+VPVVR+KIGEVAEATTVVV+PVC   EG KGV EAPMEVRSEGEFGVVVAE+GW RW
Sbjct: 311 GVRVPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVREAPMEVRSEGEFGVVVAEEGWRRW 370

Query: 246 VVLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL 305
           VVLPGWEP+AGL K GG+VV F+DAR LPWRVNRWYKEE ILVVADRSR+EV AGDGFY+
Sbjct: 371 VVLPGWEPIAGLGK-GGVVVVFKDARSLPWRVNRWYKEEAILVVADRSRKEVEAGDGFYM 430

Query: 306 MGGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 356
            G     G+LKV+RG+ LMEMG+KESLGTVLLVVRPP++ +DDQLSDEDWD
Sbjct: 431 TGATGNDGELKVQRGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 480

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BLAST of CsGy1G032240 vs. TAIR10
Match: AT5G28500.1 (unknown protein)

HSP 1 Score: 374.4 bits (960), Expect = 7.8e-104
Identity = 207/352 (58.81%), Postives = 265/352 (75.28%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLISSL  EGFTPP +EE+TGISGV+QNS IVGAQVR+SL+QS  + P++IA+FDT GAE
Sbjct: 93  PLISSLYTEGFTPPSIEELTGISGVEQNSLIVGAQVRDSLVQSG-AKPELIAAFDTNGAE 152

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLL+T +R AAA+YIV++  D+KGA DLARA+KDFP RRGD G   FDY+  GDC
Sbjct: 153 LLYEIRLLNTTQRVAAAEYIVDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDC 212

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 185
           L++M YR SRE+ S +E RT  LE+AL+  VTEKA+  ++ +L G+ + +   EEEI   
Sbjct: 213 LSFMLYRKSREHRSPSEIRTTLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEI-KI 272

Query: 186 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 245
           ++VPVVR++ GEVA A++VVV+PVCKA EGE+ + EAPME  S GEFGVV AEK WSRWV
Sbjct: 273 IRVPVVRLRFGEVAGASSVVVLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWV 332

Query: 246 VLPGWEPVAGLVKGGGLVVAFEDAR-VLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL 305
           VLPGW+PV  + K  G+ V+F D R VLPW      K E I+VV DR ++ V A +G+Y 
Sbjct: 333 VLPGWDPVVAVRK--GVAVSFSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYY 392

Query: 306 MGGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDD-QLSDEDWD 356
           +   DGG  +K++RG  L E GV ESLG V+LVVRPPR+ +D+ Q++DEDWD
Sbjct: 393 LVVADGG--MKLDRGLVLKEKGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434

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BLAST of CsGy1G032240 vs. TAIR10
Match: AT3G04550.1 (unknown protein)

HSP 1 Score: 364.8 bits (935), Expect = 6.2e-101
Identity = 199/355 (56.06%), Postives = 256/355 (72.11%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLISSL  +GFTPP +EE+TGIS ++QN  IVGAQVR+S+LQS   +P++I++FDTGGAE
Sbjct: 103 PLISSLYTDGFTPPTIEELTGISSIEQNRLIVGAQVRDSILQS-IHEPELISAFDTGGAE 162

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLLST +R AAA +I++  +DSKGAQDLARA+KD+P RRGD GW  FDY+  GDC
Sbjct: 163 LLYEIRLLSTTQRVAAATFIIDRNIDSKGAQDLARAIKDYPNRRGDVGWLDFDYNLPGDC 222

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDL----IVGDLEGKGDGKDGVEEE 185
           L+++YYR SRE  + +++RT+ L +AL V  +EKA++     + GD              
Sbjct: 223 LSFLYYRQSRENKNPSDQRTSMLLQALGVAESEKAKNRLNTELYGDKXXXXXXXXXXXXX 282

Query: 186 IGAAVKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGW 245
               +++PVVR+K GEVAEAT+VVV+PVCKA EGEK + EAPME+ + G+F VV AEKGW
Sbjct: 283 XXXXIRIPVVRLKFGEVAEATSVVVLPVCKAEEGEKKILEAPMEIIAGGDFKVVEAEKGW 342

Query: 246 SRWVVLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDG 305
            RWVVLP W PVA + KGG  V   +D +VLPW      KEEP+LVVADR R  V A DG
Sbjct: 343 KRWVVLPSWNPVAAIGKGGVAVSFRDDRKVLPWD----GKEEPLLVVADRVRNVVEADDG 402

Query: 306 FYLMGGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDD-QLSDEDWD 356
           +YL+   +G   LK+E+G+ L    VKESLG V+LVVRPPRE +DD Q S ++WD
Sbjct: 403 YYLVVAENG---LKLEKGSDLKAREVKESLGMVVLVVRPPREDDDDWQTSHQNWD 449

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BLAST of CsGy1G032240 vs. Swiss-Prot
Match: sp|Q9LKR8|RAF1_ARATH (Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.1 PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.4e-102
Identity = 207/352 (58.81%), Postives = 265/352 (75.28%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLISSL  EGFTPP +EE+TGISGV+QNS IVGAQVR+SL+QS  + P++IA+FDT GAE
Sbjct: 93  PLISSLYTEGFTPPSIEELTGISGVEQNSLIVGAQVRDSLVQSG-AKPELIAAFDTNGAE 152

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLL+T +R AAA+YIV++  D+KGA DLARA+KDFP RRGD G   FDY+  GDC
Sbjct: 153 LLYEIRLLNTTQRVAAAEYIVDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDC 212

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 185
           L++M YR SRE+ S +E RT  LE+AL+  VTEKA+  ++ +L G+ + +   EEEI   
Sbjct: 213 LSFMLYRKSREHRSPSEIRTTLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEI-KI 272

Query: 186 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 245
           ++VPVVR++ GEVA A++VVV+PVCKA EGE+ + EAPME  S GEFGVV AEK WSRWV
Sbjct: 273 IRVPVVRLRFGEVAGASSVVVLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWV 332

Query: 246 VLPGWEPVAGLVKGGGLVVAFEDAR-VLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL 305
           VLPGW+PV  + K  G+ V+F D R VLPW      K E I+VV DR ++ V A +G+Y 
Sbjct: 333 VLPGWDPVVAVRK--GVAVSFSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYY 392

Query: 306 MGGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDD-QLSDEDWD 356
           +   DGG  +K++RG  L E GV ESLG V+LVVRPPR+ +D+ Q++DEDWD
Sbjct: 393 LVVADGG--MKLDRGLVLKEKGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434

[Close]

BLAST of CsGy1G032240 vs. Swiss-Prot
Match: sp|Q9SR19|RAF2_ARATH (Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.2 PE=1 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 1.1e-99
Identity = 199/355 (56.06%), Postives = 256/355 (72.11%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLISSL  +GFTPP +EE+TGIS ++QN  IVGAQVR+S+LQS   +P++I++FDTGGAE
Sbjct: 103 PLISSLYTDGFTPPTIEELTGISSIEQNRLIVGAQVRDSILQS-IHEPELISAFDTGGAE 162

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLLST +R AAA +I++  +DSKGAQDLARA+KD+P RRGD GW  FDY+  GDC
Sbjct: 163 LLYEIRLLSTTQRVAAATFIIDRNIDSKGAQDLARAIKDYPNRRGDVGWLDFDYNLPGDC 222

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDL----IVGDLEGKGDGKDGVEEE 185
           L+++YYR SRE  + +++RT+ L +AL V  +EKA++     + GD              
Sbjct: 223 LSFLYYRQSRENKNPSDQRTSMLLQALGVAESEKAKNRLNTELYGDKXXXXXXXXXXXXX 282

Query: 186 IGAAVKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGW 245
               +++PVVR+K GEVAEAT+VVV+PVCKA EGEK + EAPME+ + G+F VV AEKGW
Sbjct: 283 XXXXIRIPVVRLKFGEVAEATSVVVLPVCKAEEGEKKILEAPMEIIAGGDFKVVEAEKGW 342

Query: 246 SRWVVLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDG 305
            RWVVLP W PVA + KGG  V   +D +VLPW      KEEP+LVVADR R  V A DG
Sbjct: 343 KRWVVLPSWNPVAAIGKGGVAVSFRDDRKVLPWD----GKEEPLLVVADRVRNVVEADDG 402

Query: 306 FYLMGGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDD-QLSDEDWD 356
           +YL+   +G   LK+E+G+ L    VKESLG V+LVVRPPRE +DD Q S ++WD
Sbjct: 403 YYLVVAENG---LKLEKGSDLKAREVKESLGMVVLVVRPPREDDDDWQTSHQNWD 449

[Close]

BLAST of CsGy1G032240 vs. Swiss-Prot
Match: sp|Q7XDY9|RAF1_ORYSJ (Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RAF1 PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.9e-67
Identity = 158/362 (43.65%), Postives = 214/362 (59.12%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDP-DVIASFDT-GG 65
           PLIS+L +EGFTP  +EE TGISGV+QNS +V  QVR+SL+      P +++  FD+ GG
Sbjct: 118 PLISALSREGFTPSSIEEATGISGVEQNSVVVATQVRDSLVADEGGFPAELLRYFDSYGG 177

Query: 66  AELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAG 125
            ELLYE+R L+  +RA AA++ ++ RL+ +G ++LAR+MKDFP+RRGD GWE F  D  G
Sbjct: 178 PELLYELRFLNARQRADAARHAIDRRLEPRGVRELARSMKDFPQRRGDDGWEAFTRDNPG 237

Query: 126 DCLAYMYYRLSREYNSSTERRTAALEEALKVV----------VTEKARDLIVGDLEGKGD 185
           DCLA+  +R SRE     E   A LE AL+VV                            
Sbjct: 238 DCLAFARFRQSRE-AIDAEDSVAELERALEVVDXXXXXXXXXXXXXRXXXXXXXXXXXXX 297

Query: 186 GKDGVEEEIGAAVKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFG 245
                         VPVVR+  GEVAEATTV+++PV + G+G + +  AP   R++ + G
Sbjct: 298 XXXXXXXXXXXRPAVPVVRLMYGEVAEATTVLLLPVVREGDGGEALAHAPRRTRTDADLG 357

Query: 246 VVVAEKGWSRWVVLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSR 305
           +V  +KGW+RW V+PGW PVA  V G  +V+   D R LPWR     + E +LVVA+R R
Sbjct: 358 MVEVDKGWTRWAVVPGWGPVAE-VAGEAVVIELADGRTLPWRS---AEAERVLVVANRGR 417

Query: 306 REVVAGDGFYLMGGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDED 356
           REVV  DG Y++   +  G         L   GV E+   VL+VVRPPR+ EDD +SD++
Sbjct: 418 REVVE-DGIYVV---EREGRXXXXXXXKLAAEGVGEAAAEVLVVVRPPRD-EDDMISDDE 469

[Close]

BLAST of CsGy1G032240 vs. Swiss-Prot
Match: sp|B4FR29|RAF1_MAIZE (Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 6.6e-60
Identity = 148/363 (40.77%), Postives = 207/363 (57.02%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDS--DPDVIASFDT-G 65
           PLISSL ++GF P  ++E TGISGV+QN  +V +QVR+SLL    +   PD++  FD+ G
Sbjct: 111 PLISSLSRDGFNPSSIQEATGISGVEQNCLVVASQVRDSLLDDRAAAFPPDLLPYFDSLG 170

Query: 66  GAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFA 125
           G E+LYE+R L+  +RA AA++ +  RL+ KG ++LARAMK FPR RG++GWE F  D  
Sbjct: 171 GPEVLYELRFLNARQRADAARHAIGYRLEPKGVRELARAMKGFPRWRGEEGWEAFSKDSP 230

Query: 126 GDCLAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLE----------GKG 185
            DCLA+  +R SRE     + R A LE AL+VV TE  R  +  +LE             
Sbjct: 231 ADCLAFARFRQSRE-AIDVQDRVAELERALQVVETESGRARVELELERXXXXXXXXXXXX 290

Query: 186 DGKDGVEEEIGAAVKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEF 245
                          V VVR++ GEVAEATTV+++PV +  +G   +  AP   +++   
Sbjct: 291 XXXXXXXXXXSLRPGVTVVRLRYGEVAEATTVILLPVVRETDGVAAMESAPRRAKTDVGL 350

Query: 246 GVVVAEKGWSRWVVLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRS 305
           GVV  ++ W+RW V+PGW PVA       +VV   D R LPWR++    EEP+LV+A+RS
Sbjct: 351 GVVEVDRAWARWAVVPGWGPVAE-AADDAVVVELADGRRLPWRMS---DEEPVLVIANRS 410

Query: 306 RREVVAGDGFYLMGGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDE 356
           ++EVV  +G Y++   +  G L VERG  L E G+                      SDE
Sbjct: 411 KKEVVE-EGVYVL---EREGRLVVERGKKLAEQGI-XXXXXXXXXXXXXXXXXXXXXSDE 463

[Close]

BLAST of CsGy1G032240 vs. TrEMBL
Match: tr|A0A0A0LY43|A0A0A0LY43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690280 PE=4 SV=1)

HSP 1 Score: 685.3 bits (1767), Expect = 7.5e-194
Identity = 349/350 (99.71%), Postives = 350/350 (100.00%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE
Sbjct: 101 PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 160

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC
Sbjct: 161 LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 220

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 185
           LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA
Sbjct: 221 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 280

Query: 186 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 245
           VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV
Sbjct: 281 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 340

Query: 246 VLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM 305
           VLPGWEPVAGLVKGGG+VVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM
Sbjct: 341 VLPGWEPVAGLVKGGGVVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM 400

Query: 306 GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 356
           GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD
Sbjct: 401 GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450

[Close]

BLAST of CsGy1G032240 vs. TrEMBL
Match: tr|A0A1S3CHL8|A0A1S3CHL8_CUCME (rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501013 PE=4 SV=1)

HSP 1 Score: 632.9 bits (1631), Expect = 4.4e-178
Identity = 321/354 (90.68%), Postives = 339/354 (95.76%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLISSLLQEGFTPP LEEITGISGVQQN+F+VGAQVRESL+QSNDSDPDVIASFDT GAE
Sbjct: 101 PLISSLLQEGFTPPTLEEITGISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAE 160

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLLSTEKR AAAKYIVENRLDSKGAQDLARA+KDFPRR+GD+GWE FDYD AGDC
Sbjct: 161 LLYEIRLLSTEKRVAAAKYIVENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDC 220

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 185
           LAYMYYRLSREYN+S+ERRTAALEEALKVVVTEKAR+LIVGDLE KGDGKDGVEEE GA 
Sbjct: 221 LAYMYYRLSREYNNSSERRTAALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAG 280

Query: 186 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 245
           V+VPVVR+KIGEVAEAT VVVMPVCKAGEGEKGVGEAPMEVRSEG+FGVVVAEKGWSRWV
Sbjct: 281 VRVPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWV 340

Query: 246 VLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM 305
           VLPGWEPVAGLVKGGG+VVAF+DARVLPWRVNRWYKEEPILVVADRSR+EVVAGDGFYLM
Sbjct: 341 VLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLM 400

Query: 306 ----GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 356
               GGGDGGG+LKVERGNAL EMGVKESLGTV+LVVRPP+E EDDQLSDEDWD
Sbjct: 401 GGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of CsGy1G032240 vs. TrEMBL
Match: tr|A0A2I4EXP4|A0A2I4EXP4_9ROSI (rubisco accumulation factor 1, chloroplastic OS=Juglans regia OX=51240 GN=LOC108993631 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 1.4e-131
Identity = 246/351 (70.09%), Postives = 290/351 (82.62%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLI +L++EGF+P  +EE TGISGV+QN  +V AQVR+SLLQSN +DP++++SFDTGGAE
Sbjct: 95  PLIPTLIREGFSPSSIEESTGISGVEQNRLVVAAQVRDSLLQSN-TDPEILSSFDTGGAE 154

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLLS ++RAAAA YIVE R D+KGAQDLARAMKDFPRRRGDKGWE FDY   GDC
Sbjct: 155 LLYEIRLLSAQQRAAAASYIVEQRFDAKGAQDLARAMKDFPRRRGDKGWESFDYALPGDC 214

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 185
           L++MYYR SRE+   +E RTA+LE+AL+V  TEKA+  I+ DLEGKG+GK G+E ++   
Sbjct: 215 LSFMYYRQSREHKDPSEERTASLEQALRVAQTEKAKSRILEDLEGKGEGKGGMEGDMEYG 274

Query: 186 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 245
           V+VPVVR+KIGEVAEA++VVV+PVC+A E E G+ EAP E RSEGEFGVVVAEK W RWV
Sbjct: 275 VRVPVVRLKIGEVAEASSVVVLPVCRAEEMEGGILEAPWECRSEGEFGVVVAEKAWKRWV 334

Query: 246 VLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM 305
           VLPGW PV  L K GG+ V+F DAR LPW+ NRWYKEE ILVVADR R+EV A DGFYL+
Sbjct: 335 VLPGWTPVMELGK-GGVAVSFGDARALPWKANRWYKEEAILVVADRGRKEVAADDGFYLV 394

Query: 306 G-GGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 356
               DG G LKVERG+AL EMGVKESLGTV+LVVRPPRE  DDQLSDEDW+
Sbjct: 395 AVDSDGRGALKVERGSALKEMGVKESLGTVVLVVRPPREDTDDQLSDEDWE 443

[Close]

BLAST of CsGy1G032240 vs. TrEMBL
Match: tr|M5WAU1|M5WAU1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G348600 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 5.9e-130
Identity = 237/350 (67.71%), Postives = 290/350 (82.86%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLI SLLQEGFTPP +EE+TGISGV+QN  +V AQVR+SL+QS  +DP ++A FDTGG+E
Sbjct: 107 PLIPSLLQEGFTPPTIEEVTGISGVEQNRLVVAAQVRDSLVQSK-TDPKILAEFDTGGSE 166

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLLS ++RAAAA+YI+EN+LD+KG QDLAR+MKDFPRRRGDKGWE FDY   GDC
Sbjct: 167 LLYEIRLLSVQQRAAAARYIIENKLDAKGTQDLARSMKDFPRRRGDKGWESFDYAHPGDC 226

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 185
           L ++YYR +RE+ + +E RTAALE+ALKV  T+KA+ +I+ DLEG+ D K+G E ++   
Sbjct: 227 LGFIYYRQAREHKNPSEPRTAALEQALKVAGTDKAKKIILTDLEGETDEKEGREGDVIDV 286

Query: 186 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 245
           V+VPVVR+K GEVAE++ VV++PVC+A E +K V EAP E  SEGEFGVVVAEKGW RWV
Sbjct: 287 VRVPVVRLKFGEVAESSKVVILPVCRADEKDKEVLEAPWECSSEGEFGVVVAEKGWKRWV 346

Query: 246 VLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM 305
           VLPGWEPV GL K GG+VV+F DARVLPW+VNRWYKEEPIL+VADRS++EV A DGFYL 
Sbjct: 347 VLPGWEPVVGLGK-GGVVVSFSDARVLPWKVNRWYKEEPILLVADRSKKEVTADDGFYLA 406

Query: 306 GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 356
               GG   KV RG+AL E GVKESLGTV+++VRPPR+  DDQLS+EDW+
Sbjct: 407 AVEGGGLGFKVVRGSALKETGVKESLGTVVMIVRPPRDETDDQLSEEDWE 454

[Close]

BLAST of CsGy1G032240 vs. TrEMBL
Match: tr|W9RQR4|W9RQR4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024527 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 3.8e-129
Identity = 238/350 (68.00%), Postives = 290/350 (82.86%), Query Frame = 0


Query: 6   PLISSLLQEGFTPPVLEEITGISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAE 65
           PLI SL+QEGFTPP LEE TGISG++QN  +V AQVR+SL+QSN +DP V+++FD GGAE
Sbjct: 85  PLIPSLIQEGFTPPSLEEATGISGIEQNHLVVAAQVRDSLIQSN-TDPAVVSAFDLGGAE 144

Query: 66  LLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDC 125
           LLYEIRLL+ ++R+AAA YI  N LD++G QDLAR+++DFPRRRGDKGWE FDY   GDC
Sbjct: 145 LLYEIRLLNAQQRSAAASYIAANGLDARGVQDLARSVRDFPRRRGDKGWESFDYTQPGDC 204

Query: 126 LAYMYYRLSREYNSSTERRTAALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAA 185
           LA+MY+R SRE+   +E+RTAALE+AL   VTE+A+  ++ +L  +G+G+   E EIG  
Sbjct: 205 LAFMYFRQSREHKKPSEQRTAALEQALSAAVTERAKGRVLEELNAEGEGEITGEGEIGEE 264

Query: 186 VKVPVVRMKIGEVAEATTVVVMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWV 245
           V+VPVVR+KIGEVAEA+TV V+PVCKAGE +KG+ EAP E  +EGEFGVVVAEKGW+RWV
Sbjct: 265 VRVPVVRLKIGEVAEASTVAVLPVCKAGERDKGLEEAPRECWTEGEFGVVVAEKGWARWV 324

Query: 246 VLPGWEPVAGLVKGGGLVVAFEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYLM 305
           VLP WEPVAGL K GG+VV+F DARVLPWR NRWYKEE ILVVADR R+EV   +GFYL+
Sbjct: 325 VLPAWEPVAGLGK-GGVVVSFSDARVLPWRTNRWYKEEAILVVADRDRKEVSVDNGFYLV 384

Query: 306 GGGDGGGDLKVERGNALMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 356
           GG   GGDLKVERG+AL E GV+ESLGTV+LVVRPP++  DDQLSDEDW+
Sbjct: 385 GG--DGGDLKVERGSALKETGVEESLGTVVLVVRPPKDAVDDQLSDEDWE 430

The following BLAST results are available for this feature:

BLAST of CsGy1G032240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142574.1	1.1e-193	99.71	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis sativus] >KGN66...	[more]
XP_008462710.1	6.7e-178	90.68	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo]	[more]
XP_022933155.1	2.0e-153	79.49	rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita moschata]	[more]
XP_023531170.1	3.7e-152	78.63	rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965491.1	5.3e-151	78.06	rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of CsGy1G032240 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28500.1	7.8e-104	58.81	unknown protein	[more]
AT3G04550.1	6.2e-101	56.06	unknown protein	[more]

BLAST of CsGy1G032240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LKR8\|RAF1_ARATH	1.4e-102	58.81	Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q9SR19\|RAF2_ARATH	1.1e-99	56.06	Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q7XDY9\|RAF1_ORYSJ	1.9e-67	43.65	Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|B4FR29\|RAF1_MAIZE	6.6e-60	40.77	Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV...	[more]

BLAST of CsGy1G032240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY43\|A0A0A0LY43_CUCSA	7.5e-194	99.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690280 PE=4 SV=1	[more]
tr\|A0A1S3CHL8\|A0A1S3CHL8_CUCME	4.4e-178	90.68	rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
tr\|A0A2I4EXP4\|A0A2I4EXP4_9ROSI	1.4e-131	70.09	rubisco accumulation factor 1, chloroplastic OS=Juglans regia OX=51240 GN=LOC108...	[more]
tr\|M5WAU1\|M5WAU1_PRUPE	5.9e-130	67.71	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G348600 PE=4 SV=1	[more]
tr\|W9RQR4\|W9RQR4_9ROSA	3.8e-129	68.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024527 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR037494	RAF1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G032240.1	CsGy1G032240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35299:SF2	RUBISCO ACCUMULATION FACTOR 1, CHLOROPLASTIC-RELATED	coord: 6..355
IPR037494	Rubisco accumulation factor 1	PANTHER	PTHR35299	FAMILY NOT NAMED	coord: 6..355

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G032240	Cla002983	Watermelon (97103) v1	cgybwmB086
CsGy1G032240	Csa1G690280	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G032240	MELO3C024664	Melon (DHL92) v3.5.1	cgybmeB041
CsGy1G032240	ClCG06G009410	Watermelon (Charleston Gray)	cgybwcgB081
CsGy1G032240	CSPI01G33590	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G032240	CmaCh11G009810	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G032240	CmoCh11G010010	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G032240	Lsi06G007970	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G032240	Cp4.1LG04g01890	Cucurbita pepo (Zucchini)	cgybcpeB112
CsGy1G032240	MELO3C024664.2	Melon (DHL92) v3.6.1	cgybmedB035
CsGy1G032240	CsaV3_1G045560	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G032240	Cla97C06G119120	Watermelon (97103) v2	cgybwmbB073
CsGy1G032240	Bhi02G001029	Wax gourd	cgybwgoB100
CsGy1G032240	Carg16480	Silver-seed gourd	carcgybB0899

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G032240	Watermelon (97103) v2	cgybwmbB079
CsGy1G032240	Cucurbita maxima (Rimu)	cgybcmaB019
CsGy1G032240	Cucurbita moschata (Rifu)	cgybcmoB018
CsGy1G032240	Cucurbita pepo (Zucchini)	cgybcpeB135
CsGy1G032240	Watermelon (Charleston Gray)	cgybwcgB074
CsGy1G032240	Silver-seed gourd	carcgybB0015