MELO3C021109 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021109
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description2-oxoglutarate dehydrogenase E1 component
Locationchr1 : 26481205 .. 26481619 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACGAACCTAGTTCGGCCATGGGAGGGCTAGTGGGGATGCTAAAGGACTCATTAATGGAGGGGGTTGGTTCATCAATGGAAGGAGTTCGAGGTATTGTTGAGAGCTTTATAGAGAAGATGGTGAATGCAAGTTCTGAAGTCGTAAGTTCTTCAGCGTTTGGTTTGTTTGAGATTGTGAAAACTGTTATGAATTTGGTGGTTGATTCGGGATATAGTGTTGGAGGGTTAGTTGAGAAGACACGAACTGCATTGGAGATTCTAAGAATGGAAGAGCTTCGAGAGATTATTGTGAACATTGCTAACATAGGTGTGAATATGATTATTACTTATTTATTAGGTTAAAATCTTCGATATTCTGTCTTTTTTTCATTTAAGTCTTTAAGTTTTTAGTAATTGATGCGTTTGATTCTTACG

mRNA sequence

TAACGAACCTAGTTCGGCCATGGGAGGGCTAGTGGGGATGCTAAAGGACTCATTAATGGAGGGGGTTGGTTCATCAATGGAAGGAGTTCGAGGTATTGTTGAGAGCTTTATAGAGAAGATGGTGAATGCAAGTTCTGAAGTCGTAAGTTCTTCAGCGTTTGGTTTGTTTGAGATTGTGAAAACTGTTATGAATTTGGTGGTTGATTCGGGATATAGTGTTGGAGGGTTAGTTGAGAAGACACGAACTGCATTGGAGATTCTAAGAATGGAAGAGCTTCGAGAGATTATTGTGAACATTGCTAACATAGGTGTGAATATGATTATTACTTATTTATTAGGTTAAAATCTTCGATATTCTGTCTTTTTTTCATTTAAGTCTTTAAGTTTTTAGTAATTGATGCGTTTGATTCTTACG

Coding sequence (CDS)

ATGGGAGGGCTAGTGGGGATGCTAAAGGACTCATTAATGGAGGGGGTTGGTTCATCAATGGAAGGAGTTCGAGGTATTGTTGAGAGCTTTATAGAGAAGATGGTGAATGCAAGTTCTGAAGTCGTAAGTTCTTCAGCGTTTGGTTTGTTTGAGATTGTGAAAACTGTTATGAATTTGGTGGTTGATTCGGGATATAGTGTTGGAGGGTTAGTTGAGAAGACACGAACTGCATTGGAGATTCTAAGAATGGAAGAGCTTCGAGAGATTATTGTGAACATTGCTAACATAGGTGTGAATATGATTATTACTTATTTATTAGGTTAA

Protein sequence

MGGLVGMLKDSLMEGVGSSMEGVRGIVESFIEKMVNASSEVVSSSAFGLFEIVKTVMNLVVDSGYSVGGLVEKTRTALEILRMEELREIIVNIANIGVNMIITYLLG*
Homology
[Close]
BLAST of MELO3C021109 vs. TrEMBL
Match: A0A0A0K6V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368070 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.9e-36
Identity = 83/107 (77.57%), Postives = 91/107 (85.05%), Query Frame = 1 

Query: 1   MGGLVGMLKDSLMEGVGSSMEGVRGIVESFIEKMVNASSEVVSSSAFGLFEIVKTVMNLV 60
           +GGLV  LK SLM+GVGS MEGV+GIVE  IEKMVN SSEV +SS +GLFEIVKTV NLV
Sbjct: 173 IGGLVETLKGSLMDGVGSWMEGVQGIVERLIEKMVNTSSEVANSSTYGLFEIVKTVFNLV 232

Query: 61  VDSGYSVGGLVEKTRTALEILRMEELREIIVNIANIGVNMIITYLLG 108
           VDSGYSVGGLVEKTRT LEIL+ME+LR IIVNIA I VNM+I YL G
Sbjct: 233 VDSGYSVGGLVEKTRTGLEILKMEKLRGIIVNIAKISVNMVINYLFG 279

[Close]
BLAST of MELO3C021109 vs. TrEMBL
Match: A0A0A0K6V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368070 PE=4 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 2.5e-01
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1 

Query: 2   GGLVGMLKDSLMEGVGSSMEGVRGIVESFIEKMVNASSEVVSSSAFGLFEIVKTVMNLVV 61
           GGL+   K S  EG  +  E VRGI+ESF E ++    E+ +S A G+FE   T M+ + 
Sbjct: 109 GGLLENTKGS-WEGF-NLFEQVRGIIESFCEFVLQQVWEIATSFAGGMFEFTMTNMSTMF 168

Query: 62  -DSGYSVGGLVEKTRTAL 79
            + G  +GGLVE  + +L
Sbjct: 169 NEPGSVIGGLVETLKGSL 184

[Close]
BLAST of MELO3C021109 vs. NCBI nr
Match: gi|778730356|ref|XP_011659765.1| (PREDICTED: uncharacterized protein LOC105436268 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 9.9e-36
Identity = 83/107 (77.57%), Postives = 91/107 (85.05%), Query Frame = 1 

Query: 1   MGGLVGMLKDSLMEGVGSSMEGVRGIVESFIEKMVNASSEVVSSSAFGLFEIVKTVMNLV 60
           +GGLV  LK SLM+GVGS MEGV+GIVE  IEKMVN SSEV +SS +GLFEIVKTV NLV
Sbjct: 173 IGGLVETLKGSLMDGVGSWMEGVQGIVERLIEKMVNTSSEVANSSTYGLFEIVKTVFNLV 232

Query: 61  VDSGYSVGGLVEKTRTALEILRMEELREIIVNIANIGVNMIITYLLG 108
           VDSGYSVGGLVEKTRT LEIL+ME+LR IIVNIA I VNM+I YL G
Sbjct: 233 VDSGYSVGGLVEKTRTGLEILKMEKLRGIIVNIAKISVNMVINYLFG 279

[Close]
BLAST of MELO3C021109 vs. NCBI nr
Match: gi|778730356|ref|XP_011659765.1| (PREDICTED: uncharacterized protein LOC105436268 [Cucumis sativus])

HSP 1 Score: 43.1 bits (100), Expect = 3.5e-01
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1 

Query: 2   GGLVGMLKDSLMEGVGSSMEGVRGIVESFIEKMVNASSEVVSSSAFGLFEIVKTVMNLVV 61
           GGL+   K S  EG  +  E VRGI+ESF E ++    E+ +S A G+FE   T M+ + 
Sbjct: 109 GGLLENTKGS-WEGF-NLFEQVRGIIESFCEFVLQQVWEIATSFAGGMFEFTMTNMSTMF 168

Query: 62  -DSGYSVGGLVEKTRTAL 79
            + G  +GGLVE  + +L
Sbjct: 169 NEPGSVIGGLVETLKGSL 184

The following BLAST results are available for this feature:
BLAST of MELO3C021109 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6V2_CUCSA6.9e-3677.57Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368070 PE=4 SV=1[more]
A0A0A0K6V2_CUCSA2.5e-0139.74Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368070 PE=4 SV=1[more]
BLAST of MELO3C021109 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730356|ref|XP_011659765.1|9.9e-3677.57PREDICTED: uncharacterized protein LOC105436268 [Cucumis sativus][more]
gi|778730356|ref|XP_011659765.1|3.5e-0139.74PREDICTED: uncharacterized protein LOC105436268 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021109T1MELO3C021109T1mRNA