Cp4.1LG12g10700 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g10700
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 9160616 .. 9161785 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAACTCTCCTCCTCCTCCTCCTTCTAATCCCATCGCTAAAACTCCTCATTAATGGCCTCAACTCCTTGCCCACTTTGGTTTTTTGCCTGTTCTTCAAGGCCCCACCTTGTGTTCTTGTTTCCCTTCTCAACGCCCTTAGGCCCCCTGCAGAGGCCTCTCTCGGTGCACTCCACAGCCTTGCTGATGCCTTGAAGTGGGTTTTTGTAAGCACCGTTGAGATGGGTCTGGGAATTATAGGCTCTTTTTTCATGGCTGTGTTGGGGGCTCTGAAGAATGTGGTTTTTGGTTCTTTTGGTGAGCTTGGCTCGGCGTTTGCTCGCCTTTTGGACAAGCCTAAGGCTTCTGGGGAAGGGTCTTTGTTGGAACAAGTGCGCCAGATTATCGGGTTCGTTTCGAGTAAGATCCTTGACCATGTTTTGGAAACCGCCACTTCTTCTGCAGGTAGGCTCTCTTAAGATCCTTGACCATGTTTTGGAAACCGCCACTTCTTCTGCAGGTAGGCTCTCTTAAGAATTACATACTATAATGCCCTGTATCTTCTTTACTTATAAGCCCAGGATCGTCGGACGCCCTCCCAACCATCCTCAAACTCAATTGAGGATTGATCATGGGTTATAAGTAACGAATAAGACATTTCCGCTAGGGACAATATCGTACCACCGTGGAGAGTCATGATTCCTAACATGTATCTGAACAAATTTCTTTACTGTCGTTTTCTCTCATATTTGCTAACAGATAAATATTCTCGCTTATTTCCTTACGTTTTTAAGTTTAGTGGTGATTTACCAGGCGGGGTGTTCGGGTTTGCAATGACGAGCATTTCGGCTCTCTTGAACGACCCGGGTTCAGCCATGGGAAAGTTAGTGGGGATGCTGAAGGGCTTATTGGAGGGGACTGGTTCGTCCATGGGAGGGGTGCGAGGGATTGTTCAGAGCTTGGTGGAGAAGGTGGCGGAGTTGGGTCTGGGAGTGGCAAGCTCTTCAGCATCCGGTTGGTTTGAAACTGTGAAAAAGGCTATGGATTTGGTGATCGAGTCTGGTTTTACCGTTGGAGGGTTAGTTGAGAAGACCAAGGCTGCATTGGAGGTTCTCCACATGGAAGACCTTCGAAGCCTTATTCAAACCCTTGCTAGGCTAAGTGTGAATATGATTATTAGTTATTTTCTAGGT

mRNA sequence

TCAACTCTCCTCCTCCTCCTCCTTCTAATCCCATCGCTAAAACTCCTCATTAATGGCCTCAACTCCTTGCCCACTTTGGTTTTTTGCCTGTTCTTCAAGGCCCCACCTTGTGTTCTTGTTTCCCTTCTCAACGCCCTTAGGCCCCCTGCAGAGGCCTCTCTCGGTGCACTCCACAGCCTTGCTGATGCCTTGAAGTGGGTTTTTGTAAGCACCGTTGAGATGGGTCTGGGAATTATAGGCTCTTTTTTCATGGCTGTGTTGGGGGCTCTGAAGAATGTGGTTTTTGGTTCTTTTGGTGAGCTTGGCTCGGCGTTTGCTCGCCTTTTGGACAAGCCTAAGGCTTCTGGGGAAGGGTCTTTGTTGGAACAAGTGCGCCAGATTATCGGGTTCGTTTCGAGTAAGATCCTTGACCATGTTTTGGAAACCGCCACTTCTTCTGCAGGCGGGGTGTTCGGGTTTGCAATGACGAGCATTTCGGCTCTCTTGAACGACCCGGGTTCAGCCATGGGAAAGTTAGTGGGGATGCTGAAGGGCTTATTGGAGGGGACTGGTTCGTCCATGGGAGGGGTGCGAGGGATTGTTCAGAGCTTGGTGGAGAAGGTGGCGGAGTTGGGTCTGGGAGTGGCAAGCTCTTCAGCATCCGGTTGGTTTGAAACTGTGAAAAAGGCTATGGATTTGGTGATCGAGTCTGGTTTTACCGTTGGAGGGTTAGTTGAGAAGACCAAGGCTGCATTGGAGGTTCTCCACATGGAAGACCTTCGAAGCCTTATTCAAACCCTTGCTAGGCTAAGTGTGAATATGATTATTAGTTATTTTCTAGGT

Coding sequence (CDS)

TCAACTCTCCTCCTCCTCCTCCTTCTAATCCCATCGCTAAAACTCCTCATTAATGGCCTCAACTCCTTGCCCACTTTGGTTTTTTGCCTGTTCTTCAAGGCCCCACCTTGTGTTCTTGTTTCCCTTCTCAACGCCCTTAGGCCCCCTGCAGAGGCCTCTCTCGGTGCACTCCACAGCCTTGCTGATGCCTTGAAGTGGGTTTTTGTAAGCACCGTTGAGATGGGTCTGGGAATTATAGGCTCTTTTTTCATGGCTGTGTTGGGGGCTCTGAAGAATGTGGTTTTTGGTTCTTTTGGTGAGCTTGGCTCGGCGTTTGCTCGCCTTTTGGACAAGCCTAAGGCTTCTGGGGAAGGGTCTTTGTTGGAACAAGTGCGCCAGATTATCGGGTTCGTTTCGAGTAAGATCCTTGACCATGTTTTGGAAACCGCCACTTCTTCTGCAGGCGGGGTGTTCGGGTTTGCAATGACGAGCATTTCGGCTCTCTTGAACGACCCGGGTTCAGCCATGGGAAAGTTAGTGGGGATGCTGAAGGGCTTATTGGAGGGGACTGGTTCGTCCATGGGAGGGGTGCGAGGGATTGTTCAGAGCTTGGTGGAGAAGGTGGCGGAGTTGGGTCTGGGAGTGGCAAGCTCTTCAGCATCCGGTTGGTTTGAAACTGTGAAAAAGGCTATGGATTTGGTGATCGAGTCTGGTTTTACCGTTGGAGGGTTAGTTGAGAAGACCAAGGCTGCATTGGAGGTTCTCCACATGGAAGACCTTCGAAGCCTTATTCAAACCCTTGCTAGGCTAAGTGTGAATATGATTATTAGTTATTTTCTAGGT

Protein sequence

STLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALHSLADALKWVFVSTVEMGLGIIGSFFMAVLGALKNVVFGSFGELGSAFARLLDKPKASGEGSLLEQVRQIIGFVSSKILDHVLETATSSAGGVFGFAMTSISALLNDPGSAMGKLVGMLKGLLEGTGSSMGGVRGIVQSLVEKVAELGLGVASSSASGWFETVKKAMDLVIESGFTVGGLVEKTKAALEVLHMEDLRSLIQTLARLSVNMIISYFLG
Homology
[Close]
BLAST of Cp4.1LG12g10700 vs. TrEMBL
Match: A0A0A0K6V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368070 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.9e-68
Identity = 157/277 (56.68%), Postives = 197/277 (71.12%), Query Frame = 1 

Query: 1   STLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALHSL 60
           ST LLLLLLIPSLK++ING NSL TL  CLF KAPPC+++S L A++ PAEA L A  SL
Sbjct: 3   STFLLLLLLIPSLKIIINGFNSLSTLAICLFLKAPPCLILSFLKAIKLPAEAFLSAFQSL 62

Query: 61  ADALKWVFVSTVEMGLGIIGSFFMAVLGALKNVVFGSFGE-LGSAFARLLDKPKASGEG- 120
            +ALK +FVST+EMG GII SF M VL A+ NVVFGSF E   SAF  LL+  K S EG 
Sbjct: 63  GEALKSIFVSTIEMGFGIISSFVMGVLEAVMNVVFGSFVESSASAFGGLLENTKGSWEGF 122

Query: 121 SLLEQVRQIIGFVSSKILDHVLETATSSAGGVFGFAMTSISALLNDPGSAMGKLVGMLKG 180
           +L EQVR II      +L  V E ATS AGG+F F MT++S + N+PGS +G LV  LKG
Sbjct: 123 NLFEQVRGIIESFCEFVLQQVWEIATSFAGGMFEFTMTNMSTMFNEPGSVIGGLVETLKG 182

Query: 181 -LLEGTGSSMGGVRGIVQSLVEKVAELGLGVASSSASGWFETVKKAMDLVIESGFTVGGL 240
            L++G GS M GV+GIV+ L+EK+      VA+SS  G FE VK   +LV++SG++VGGL
Sbjct: 183 SLMDGVGSWMEGVQGIVERLIEKMVNTSSEVANSSTYGLFEIVKTVFNLVVDSGYSVGGL 242

Query: 241 VEKTKAALEVLHMEDLRSLIQTLARLSVNMIISYFLG 275
           VEKT+  LE+L ME LR +I  +A++SVNM+I+Y  G
Sbjct: 243 VEKTRTGLEILKMEKLRGIIVNIAKISVNMVINYLFG 279

[Close]
BLAST of Cp4.1LG12g10700 vs. NCBI nr
Match: gi|778730356|ref|XP_011659765.1| (PREDICTED: uncharacterized protein LOC105436268 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 8.5e-68
Identity = 157/277 (56.68%), Postives = 197/277 (71.12%), Query Frame = 1 

Query: 1   STLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALHSL 60
           ST LLLLLLIPSLK++ING NSL TL  CLF KAPPC+++S L A++ PAEA L A  SL
Sbjct: 3   STFLLLLLLIPSLKIIINGFNSLSTLAICLFLKAPPCLILSFLKAIKLPAEAFLSAFQSL 62

Query: 61  ADALKWVFVSTVEMGLGIIGSFFMAVLGALKNVVFGSFGE-LGSAFARLLDKPKASGEG- 120
            +ALK +FVST+EMG GII SF M VL A+ NVVFGSF E   SAF  LL+  K S EG 
Sbjct: 63  GEALKSIFVSTIEMGFGIISSFVMGVLEAVMNVVFGSFVESSASAFGGLLENTKGSWEGF 122

Query: 121 SLLEQVRQIIGFVSSKILDHVLETATSSAGGVFGFAMTSISALLNDPGSAMGKLVGMLKG 180
           +L EQVR II      +L  V E ATS AGG+F F MT++S + N+PGS +G LV  LKG
Sbjct: 123 NLFEQVRGIIESFCEFVLQQVWEIATSFAGGMFEFTMTNMSTMFNEPGSVIGGLVETLKG 182

Query: 181 -LLEGTGSSMGGVRGIVQSLVEKVAELGLGVASSSASGWFETVKKAMDLVIESGFTVGGL 240
            L++G GS M GV+GIV+ L+EK+      VA+SS  G FE VK   +LV++SG++VGGL
Sbjct: 183 SLMDGVGSWMEGVQGIVERLIEKMVNTSSEVANSSTYGLFEIVKTVFNLVVDSGYSVGGL 242

Query: 241 VEKTKAALEVLHMEDLRSLIQTLARLSVNMIISYFLG 275
           VEKT+  LE+L ME LR +I  +A++SVNM+I+Y  G
Sbjct: 243 VEKTRTGLEILKMEKLRGIIVNIAKISVNMVINYLFG 279

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g10700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g10700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6V2_CUCSA5.9e-6856.68Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368070 PE=4 SV=1[more]
BLAST of Cp4.1LG12g10700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g10700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730356|ref|XP_011659765.1|8.5e-6856.68PREDICTED: uncharacterized protein LOC105436268 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g10700.1Cp4.1LG12g10700.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g10700Cucsa.387750Cucumber (Gy14) v1cgycpeB1027
Cp4.1LG12g10700CmoCh17G012650Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g10700Cla014902Watermelon (97103) v1cpewmB135
Cp4.1LG12g10700Csa7G368070Cucumber (Chinese Long) v2cpecuB157
Cp4.1LG12g10700MELO3C021109Melon (DHL92) v3.5.1cpemeB119
Cp4.1LG12g10700ClCG09G008470Watermelon (Charleston Gray)cpewcgB129
Cp4.1LG12g10700CSPI07G14810Wild cucumber (PI 183967)cpecpiB159
Cp4.1LG12g10700Lsi02G021360Bottle gourd (USVL1VR-Ls)cpelsiB111
Cp4.1LG12g10700CsaV3_7G026590Cucumber (Chinese Long) v3cpecucB0182
Cp4.1LG12g10700Bhi09G001056Wax gourdcpewgoB0209
Cp4.1LG12g10700Carg11474Silver-seed gourdcarcpeB0018
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g10700Silver-seed gourdcarcpeB0116
Cp4.1LG12g10700Cucurbita pepo (Zucchini)cpecpeB153
Cp4.1LG12g10700Cucurbita pepo (Zucchini)cpecpeB160
Cp4.1LG12g10700Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g10700Cucurbita maxima (Rimu)cmacpeB896
Cp4.1LG12g10700Cucurbita moschata (Rifu)cmocpeB834
Cp4.1LG12g10700Cucumber (Gy14) v2cgybcpeB900
Cp4.1LG12g10700Melon (DHL92) v3.6.1cpemedB146