Carg11474 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11474
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	B3 domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_083 : 108842 .. 109969 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTTCTTGCATTCCTTGCTTAGCTTCAACTCTTCTCCTCCTCCTCCTTCTAATCCCATCGCTAAAGCTCCTCATTAATGGCCTCAACTCCTTGCCCACTTTGGTTTTTTGCCTGTTCTTCAAGGCCCCACCTTGTGTTCTTGTTTCCCTTCTCAACGCCCTTAGGCCCCCTGCAGAGGCCTCTCTCGGTGCACTCCAGAGCCTTGCCGATGCCTTGAAGTGGGTTTTTGTAAGCACCGTTGAGATGGGTCTGGGAATTATAGGCTCTTTTTTGATGGCTGTGTTGGGGGCTCTGAAGAATGTGGTTTTTGGTTCTTTTGGTGAGCTTGGCTCCGTGTTTGGTGGCCTTTTGGACAAGCCTCAGGCTTCTGGGGAAGGGTCTTTGTTGGAACAAGTGCGCGAGATTATCGGGTTCATTTCGAGTAAGATCCTTGACCGTGTTTTGGAAACCGCCACTTCTTCTGCAGGTAGGCTCTGTTAAGAATTACAACTCTCCACAATGATATAACGTCCACTTTAAGTATAAGCTCTTATGATTTTGCTTTGAGTTTTCCCAAAATGCCTAGTATCTTCTTTACTTATAAGCCCAGGATCGTGGGACTCCCTCCTAACCATCTCGAGGCTCAGTTGAGGATTGATCATGGGTTATAAGTAACGAATAAGACATTTTGGGGAAACCAAAACAAATAAATATTCTCGGTTATTTCCTTACGTTTTTAAGTTTAGTGGTGATTTACCAGGCGGGGTGTTCGGGTTTGCAATGACGAGCATTTCCGCTCTCTTGAACGACCCGGGTTCAGCCATGGGAAAGTTAGTGGGGATTCTGAAGGGCTTATTGGAGGGGACTGGTTCGTCCATGGGAGGGGTGCGAGGGATTGTTGAGAGCTTGGTGGAGAAGGTGGCCGAGTTGGGTCTGGGAGTGGCAAGCTCTTCAGCATCTGGTTGGTTTGAAGCTGTGAAAAAAGCCATGGATTTGGTGATCGAGTCTGGTTTTACCGTTGGAGGGTTAGTTGAGAAGACCAAGGCTGCATTGGAGGTTCTCCACATGGAAGACCTTCGAAGCCTTATTCAAAGCCTTGCTAGGCTAAGTGTGAATATGATTATTAGTTATTTTCTAGGTTAA

mRNA sequence

ATGTCTTCTTCTTGCATTCCTTGCTTAGCTTCAACTCTTCTCCTCCTCCTCCTTCTAATCCCATCGCTAAAGCTCCTCATTAATGGCCTCAACTCCTTGCCCACTTTGGTTTTTTGCCTGTTCTTCAAGGCCCCACCTTGTGTTCTTGTTTCCCTTCTCAACGCCCTTAGGCCCCCTGCAGAGGCCTCTCTCGGTGCACTCCAGAGCCTTGCCGATGCCTTGAAGTGGGTTTTTGTAAGCACCGTTGAGATGGGTCTGGGAATTATAGGCTCTTTTTTGATGGCTGTGTTGGGGGCTCTGAAGAATGTGGTTTTTGGTTCTTTTGGTGAGCTTGGCTCCGTGTTTGGTGGCCTTTTGGACAAGCCTCAGGCTTCTGGGGAAGGCATTTCCGCTCTCTTGAACGACCCGGGTTCAGCCATGGGAAAGTTAGTGGGGATTCTGAAGGGCTTATTGGAGGGGACTGGTTCGTCCATGGGAGGGGTGCGAGGGATTGTTGAGAGCTTGGTGGAGAAGGTGGCCGAGTTGGGTCTGGGAGTGGCAAGCTCTTCAGCATCTGGTTGGTTTGAAGCTGTGAAAAAAGCCATGGATTTGGTGATCGAGTCTGGTTTTACCGTTGGAGGGTTAGTTGAGAAGACCAAGGCTGCATTGGAGGTTCTCCACATGGAAGACCTTCGAAGCCTTATTCAAAGCCTTGCTAGGCTAAGTGTGAATATGATTATTAGTTATTTTCTAGGTTAA

Coding sequence (CDS)

ATGTCTTCTTCTTGCATTCCTTGCTTAGCTTCAACTCTTCTCCTCCTCCTCCTTCTAATCCCATCGCTAAAGCTCCTCATTAATGGCCTCAACTCCTTGCCCACTTTGGTTTTTTGCCTGTTCTTCAAGGCCCCACCTTGTGTTCTTGTTTCCCTTCTCAACGCCCTTAGGCCCCCTGCAGAGGCCTCTCTCGGTGCACTCCAGAGCCTTGCCGATGCCTTGAAGTGGGTTTTTGTAAGCACCGTTGAGATGGGTCTGGGAATTATAGGCTCTTTTTTGATGGCTGTGTTGGGGGCTCTGAAGAATGTGGTTTTTGGTTCTTTTGGTGAGCTTGGCTCCGTGTTTGGTGGCCTTTTGGACAAGCCTCAGGCTTCTGGGGAAGGCATTTCCGCTCTCTTGAACGACCCGGGTTCAGCCATGGGAAAGTTAGTGGGGATTCTGAAGGGCTTATTGGAGGGGACTGGTTCGTCCATGGGAGGGGTGCGAGGGATTGTTGAGAGCTTGGTGGAGAAGGTGGCCGAGTTGGGTCTGGGAGTGGCAAGCTCTTCAGCATCTGGTTGGTTTGAAGCTGTGAAAAAAGCCATGGATTTGGTGATCGAGTCTGGTTTTACCGTTGGAGGGTTAGTTGAGAAGACCAAGGCTGCATTGGAGGTTCTCCACATGGAAGACCTTCGAAGCCTTATTCAAAGCCTTGCTAGGCTAAGTGTGAATATGATTATTAGTTATTTTCTAGGTTAA

Protein sequence

MSSSCIPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALQSLADALKWVFVSTVEMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLLDKPQASGEGISALLNDPGSAMGKLVGILKGLLEGTGSSMGGVRGIVESLVEKVAELGLGVASSSASGWFEAVKKAMDLVIESGFTVGGLVEKTKAALEVLHMEDLRSLIQSLARLSVNMIISYFLG

Homology

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BLAST of Carg11474 vs. NCBI nr
Match: XP_022954027.1 (uncharacterized protein LOC111456411 [Cucurbita moschata])

HSP 1 Score: 344.4 bits (882), Expect = 3.3e-91
Identity = 240/284 (84.51%), Postives = 241/284 (84.86%), Query Frame = 0


Query: 1   MSSSCIPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPA 60
           MSSSCIPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPA
Sbjct: 1   MSSSCIPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPA 60

Query: 61  EASLGALQSLADALKWVFVSTVEMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLLD 120
           EASLGALQSLADALKWVFVS+VEMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLLD
Sbjct: 61  EASLGALQSLADALKWVFVSSVEMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLLD 120

Query: 121 KPQASGEG---------------------------------------ISALLNDPGSAMX 180
           KPQASGEG                                       ISALLNDPGS  X
Sbjct: 121 KPQASGEGSLLELVREIIGFVSSKILDRVLETATSSAGGVFGFAMTSISALLNDPGSXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGVASSSASGWFEAVKKAMDLVIES 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGVASSSASGWFEAVKKAMDLVIES
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGVASSSASGWFEAVKKAMDLVIES 240

Query: 241 GFTVGGLVEKTKAALEVLHMEDLRSLIQSLARLSVNMIISYFLG 246
           GFTVGGLVEKTKAALEVLHMEDLRSLIQSLARL VNM ISYFLG
Sbjct: 241 GFTVGGLVEKTKAALEVLHMEDLRSLIQSLARLGVNMTISYFLG 284

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BLAST of Carg11474 vs. NCBI nr
Match: XP_022991981.1 (uncharacterized protein LOC111488468 [Cucurbita maxima])

HSP 1 Score: 339.7 bits (870), Expect = 8.1e-90
Identity = 238/284 (83.80%), Postives = 239/284 (84.15%), Query Frame = 0


Query: 1   MSSSCIPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPA 60
           MSSSCIPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPA
Sbjct: 1   MSSSCIPCLASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPA 60

Query: 61  EASLGALQSLADALKWVFVSTVEMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLLD 120
           EASLGALQSLADALKWV VSTVEMGLGIIGSFLMAVLGALKNVVFGSF E GS FGGLLD
Sbjct: 61  EASLGALQSLADALKWVCVSTVEMGLGIIGSFLMAVLGALKNVVFGSFREFGSAFGGLLD 120

Query: 121 KPQASGEG---------------------------------------ISALLNDPGSAMX 180
           KP+ASGEG                                       ISA LNDPGSAMX
Sbjct: 121 KPKASGEGSLLEQVREIIGFVSSKILDHVLETATSSAGGVFGFAMTSISAFLNDPGSAMX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGVASSSASGWFEAVKKAMDLVIES 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGVASSSASGWFE VKKAMDLVIES
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGVASSSASGWFETVKKAMDLVIES 240

Query: 241 GFTVGGLVEKTKAALEVLHMEDLRSLIQSLARLSVNMIISYFLG 246
           GFTVGGLVEKTKAALEVLHMEDLRSLIQSLARLSVNMIISYFLG
Sbjct: 241 GFTVGGLVEKTKAALEVLHMEDLRSLIQSLARLSVNMIISYFLG 284

[Close]

BLAST of Carg11474 vs. NCBI nr
Match: XP_022156757.1 (uncharacterized protein LOC111023598 [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 1.3e-34
Identity = 120/292 (41.10%), Postives = 155/292 (53.08%), Query Frame = 0


Query: 2   SSSCIPCLASTLLL-LLLLIPSLK-------LLINGLNSLPTLVFCLFFKAPPCVLVSLL 61
           SSS +   AST LL LLL+I SLK       LL NG NSLPT +F LFFK+ PCVL+S  
Sbjct: 5   SSSPLSSKASTFLLYLLLVITSLKILNLTLNLLSNGFNSLPTFIFSLFFKSTPCVLISF- 64

Query: 62  NALRPPAEASLGALQSLADALKWVFVSTVEMGLGIIGSFLMAVLGALKNVVFGSFGELGS 121
             ++ PA+A L A Q LA A++ V + T+EMGLGII SF++ VL  LKN VFGS  E GS
Sbjct: 65  --IKLPAQALLSAFQQLAQAMRAVLMYTIEMGLGIITSFVLMVLEFLKNAVFGSILESGS 124

Query: 122 VFGGLLDKPQAS----------------------------------------GEGISALL 181
           +FGGL++K ++S                                         + I  LL
Sbjct: 125 IFGGLVEKTKSSFMESSMTDQVREIIESISKKIIDMALETASSFAGSMFDFVKDTILELL 184

Query: 182 NDPGSAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGVASSSASGWFEAVKK 241
           N+P SA+                                   G GVASSSASG FE VK 
Sbjct: 185 NEPSSAI-GELVEKMKEALAGSSAMDGVREIVQNFLSKMIGAGSGVASSSASGLFEFVKN 244

Query: 242 AMDLVIESGFTVGGLVEKTKAALEVLHMEDLRSLIQSLARLSVNMIISYFLG 246
           A+ L +ESG TVGGL+EK K +LEVL ME LR +I+S++++ +++I SY  G
Sbjct: 245 ALSLAVESGLTVGGLLEKMKESLEVLSMEGLRGIIESISKIILDVIFSYLFG 292

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BLAST of Carg11474 vs. NCBI nr
Match: XP_011659765.1 (PREDICTED: uncharacterized protein LOC105436268 [Cucumis sativus] >KGN44654.1 hypothetical protein Csa_7G368070 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 88/303 (29.04%), Postives = 115/303 (37.95%), Query Frame = 0


Query: 9   LASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALQ 68
           + ST LLLLLLIPSLK++ING NSL TL  CLF KAPPC+                    
Sbjct: 1   MVSTFLLLLLLIPSLKIIINGFNSLSTLAICLFLKAPPCLXXXXXXXXXXXXXXXXXXXX 60

Query: 69  SLADAL---------------------------------------------------KWV 128
                                                                     W 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKGSWE 120

Query: 129 FVSTVEMGLGIIGSFLMAVLGALKNVVFG---------------SFGELGSVFGGLLDKP 188
             +  E   GII SF   VL  +  +                   F E GSV GGL++  
Sbjct: 121 GFNLFEQVRGIIESFCEFVLQQVWEIATSFAGGMFEFTMTNMSTMFNEPGSVIGGLVETL 180

Query: 189 QASGEGISALLNDPGSAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGVASS 246
           + S      L++  GS M                                      VA+S
Sbjct: 181 KGS------LMDGVGSWMEGVQGIVERLIEKMVNTSSE------------------VANS 240

[Close]

BLAST of Carg11474 vs. NCBI nr
Match: PSS09629.1 (B3 domain-containing protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-04
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 23  LKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALQSLADALKWVFVSTV 82
           L ++   L +L  LVF + F     +LV ++ + + P EA+ GAL+ +AD +K      V
Sbjct: 6   LNIIFLALGTLSNLVFRIIFNVTMYMLVLVIQSFKVPGEAAKGALEQVADVIKLCVEYLV 65

Query: 83  EMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLLDKPQASGEG 129
           E     I S L A+   +K  VFGS    GS  GGLL+  + S +G
Sbjct: 66  EFAWEAISSLLSALFDLVKEGVFGSVVATGSAIGGLLEHMRNSMDG 111

[Close]

BLAST of Carg11474 vs. TrEMBL
Match: tr|A0A0A0K6V2|A0A0A0K6V2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368070 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 88/303 (29.04%), Postives = 115/303 (37.95%), Query Frame = 0


Query: 9   LASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALQ 68
           + ST LLLLLLIPSLK++ING NSL TL  CLF KAPPC+                    
Sbjct: 1   MVSTFLLLLLLIPSLKIIINGFNSLSTLAICLFLKAPPCLXXXXXXXXXXXXXXXXXXXX 60

Query: 69  SLADAL---------------------------------------------------KWV 128
                                                                     W 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKGSWE 120

Query: 129 FVSTVEMGLGIIGSFLMAVLGALKNVVFG---------------SFGELGSVFGGLLDKP 188
             +  E   GII SF   VL  +  +                   F E GSV GGL++  
Sbjct: 121 GFNLFEQVRGIIESFCEFVLQQVWEIATSFAGGMFEFTMTNMSTMFNEPGSVIGGLVETL 180

Query: 189 QASGEGISALLNDPGSAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLGVASS 246
           + S      L++  GS M                                      VA+S
Sbjct: 181 KGS------LMDGVGSWMEGVQGIVERLIEKMVNTSSE------------------VANS 240

[Close]

BLAST of Carg11474 vs. TrEMBL
Match: tr|A0A2R6QJP5|A0A2R6QJP5_ACTCH (B3 domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16651 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-04
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 23  LKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALQSLADALKWVFVSTV 82
           L ++   L +L  LVF + F     +LV ++ + + P EA+ GAL+ +AD +K      V
Sbjct: 6   LNIIFLALGTLSNLVFRIIFNVTMYMLVLVIQSFKVPGEAAKGALEQVADVIKLCVEYLV 65

Query: 83  EMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLLDKPQASGEG 129
           E     I S L A+   +K  VFGS    GS  GGLL+  + S +G
Sbjct: 66  EFAWEAISSLLSALFDLVKEGVFGSVVATGSAIGGLLEHMRNSMDG 111

The following BLAST results are available for this feature:

BLAST of Carg11474 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954027.1	3.3e-91	84.51	uncharacterized protein LOC111456411 [Cucurbita moschata]	[more]
XP_022991981.1	8.1e-90	83.80	uncharacterized protein LOC111488468 [Cucurbita maxima]	[more]
XP_022156757.1	1.3e-34	41.10	uncharacterized protein LOC111023598 [Momordica charantia]	[more]
XP_011659765.1	2.1e-13	29.04	PREDICTED: uncharacterized protein LOC105436268 [Cucumis sativus] >KGN44654.1 hy...	[more]
PSS09629.1	5.2e-04	34.91	B3 domain-containing protein [Actinidia chinensis var. chinensis]	[more]

BLAST of Carg11474 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11474 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11474 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6V2\|A0A0A0K6V2_CUCSA	1.4e-13	29.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368070 PE=4 SV=1	[more]
tr\|A0A2R6QJP5\|A0A2R6QJP5_ACTCH	3.4e-04	34.91	B3 domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11474-RA	Carg11474-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11474	Cla014902	Watermelon (97103) v1	carwmB0014
Carg11474	Csa7G368070	Cucumber (Chinese Long) v2	carcuB0013
Carg11474	MELO3C021109	Melon (DHL92) v3.5.1	carmeB0011
Carg11474	ClCG09G008470	Watermelon (Charleston Gray)	carwcgB0012
Carg11474	CSPI07G14810	Wild cucumber (PI 183967)	carcpiB0013
Carg11474	Cucsa.387750	Cucumber (Gy14) v1	carcgyB0013
Carg11474	CmoCh17G012650	Cucurbita moschata (Rifu)	carcmoB0021
Carg11474	Cp4.1LG12g10700	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11474	CsaV3_7G026590	Cucumber (Chinese Long) v3	carcucB0013
Carg11474	Cla97C09G171230	Watermelon (97103) v2	carwmbB0012
Carg11474	Bhi09G001056	Wax gourd	carwgoB0015

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11474	Silver-seed gourd	carcarB009
Carg11474	Cucumber (Gy14) v2	carcgybB0012
Carg11474	Cucurbita maxima (Rimu)	carcmaB0020
Carg11474	Cucurbita maxima (Rimu)	carcmaB0021
Carg11474	Cucurbita moschata (Rifu)	carcmoB0022
Carg11474	Cucurbita pepo (Zucchini)	carcpeB0019
Carg11474	Cucurbita pepo (Zucchini)	carcpeB0020
Carg11474	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11474	Melon (DHL92) v3.6.1	carmedB0012