CmoCh17G012650 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr17 : 9955998 .. 9957125 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTTCTTGCATTCCTTGCTTAGCTTCAACTCTTCTCCTCCTCCTCCTTCTAATCCCATCGCTAAAGCTCCTCATTAATGGCCTCAACTCCTTGCCCACTTTGGTTTTTTGCCTGTTCTTCAAGGCCCCACCTTGTGTTCTTGTTTCCCTTCTCAACGCCCTTAGGCCCCCTGCAGAGGCCTCTCTCGGTGCACTCCAGAGCCTTGCTGATGCCTTGAAGTGGGTTTTTGTAAGCAGCGTTGAGATGGGTCTGGGAATTATAGGCTCTTTTTTGATGGCTGTGTTGGGGGCTCTGAAGAATGTGGTTTTTGGTTCTTTTGGTGAGCTTGGCTCCGTGTTTGGTGGCCTTTTGGACAAGCCTCAGGCTTCTGGGGAAGGGTCTTTGTTGGAACTAGTGCGCGAGATTATCGGGTTCGTTTCGAGTAAGATCCTTGACCGTGTTTTGGAAACCGCCACTTCTTCTGCAGGTATGCTCTGTTAAGAATTACAACTCTCCACAATGATATAACATTCACTTTAAGTATAAGCTCTTATGATTTTGCTTTGAGTTTTCCCAAAATGCTTAGTATCTTCTTTACTTATAAGCCCAGGATCGTGGGACTCCCTCCCAACCATCTCGAGGCTCAGTTGAGGATTGATCATGGGTTATAAGTAACGAATAAAACATTTTGGGGAAACCAAAACAAATAAATATTCTCGGTTATTTCCTTACGTTTTTAAGTTTAGTGGTGATTAACCAGGCGGGGTGTTCGGGTTTGCAATGACGAGCATTTCTGCTCTCTTGAACGACCCGGGTTCAGCCATGGGAAAGTTAGTGGGGATGCTGAAGGGCTTATTGGAGGGGACTGGTTCGTCCATGGGAGGGGTGCGAGGGATTGTTGAGAGCTTGGTGGAGAAGGTGGCCGAGTTGGGTCTGGGAGTGGCAAGCTCTTCAGCATCTGGTTGGTTTGAAGCTGTGAAAAAAGCCATGGATTTGGTGATCGAGTCTGGTTTTACCGTTGGAGGGTTAGTTGAGAAGACCAAGGCTGCATTGGAGGTTCTCCACATGGAAGACCTTCGAAGCCTTATTCAAAGCCTTGCTAGGCTAGGTGTGAATATGACTATTAGTTATTTTTTAGGTTAA

mRNA sequence

ATGTCTTCTTCTTGCATTCCTTGCTTAGCTTCAACTCTTCTCCTCCTCCTCCTTCTAATCCCATCGCTAAAGCTCCTCATTAATGGCCTCAACTCCTTGCCCACTTTGGTTTTTTGCCTGTTCTTCAAGGCCCCACCTTGTGTTCTTGTTTCCCTTCTCAACGCCCTTAGGCCCCCTGCAGAGGCCTCTCTCGGTGCACTCCAGAGCCTTGCTGATGCCTTGAAGTGGGTTTTTGTAAGCAGCGTTGAGATGGGTCTGGGAATTATAGGCTCTTTTTTGATGGCTGTGTTGGGGGCTCTGAAGAATGTGGTTTTTGGTTCTTTTGGTGAGCTTGGCTCCGTGTTTGGTGGCCTTTTGGACAAGCCTCAGGCTTCTGGGGAAGGGTCTTTGTTGGAACTAGTGCGCGAGATTATCGGGTTCGTTTCGAGTAAGATCCTTGACCGTGTTTTGGAAACCGCCACTTCTTCTGCAGGCGGGGTGTTCGGGTTTGCAATGACGAGCATTTCTGCTCTCTTGAACGACCCGGGTTCAGCCATGGGAAAGTTAGTGGGGATGCTGAAGGGCTTATTGGAGGGGACTGGTTCGTCCATGGGAGGGGTGCGAGGGATTGTTGAGAGCTTGGTGGAGAAGGTGGCCGAGTTGGGTCTGGGAGTGGCAAGCTCTTCAGCATCTGGTTGGTTTGAAGCTGTGAAAAAAGCCATGGATTTGGTGATCGAGTCTGGTTTTACCGTTGGAGGGTTAGTTGAGAAGACCAAGGCTGCATTGGAGGTTCTCCACATGGAAGACCTTCGAAGCCTTATTCAAAGCCTTGCTAGGCTAGGTGTGAATATGACTATTAGTTATTTTTTAGGTTAA

Coding sequence (CDS)

ATGTCTTCTTCTTGCATTCCTTGCTTAGCTTCAACTCTTCTCCTCCTCCTCCTTCTAATCCCATCGCTAAAGCTCCTCATTAATGGCCTCAACTCCTTGCCCACTTTGGTTTTTTGCCTGTTCTTCAAGGCCCCACCTTGTGTTCTTGTTTCCCTTCTCAACGCCCTTAGGCCCCCTGCAGAGGCCTCTCTCGGTGCACTCCAGAGCCTTGCTGATGCCTTGAAGTGGGTTTTTGTAAGCAGCGTTGAGATGGGTCTGGGAATTATAGGCTCTTTTTTGATGGCTGTGTTGGGGGCTCTGAAGAATGTGGTTTTTGGTTCTTTTGGTGAGCTTGGCTCCGTGTTTGGTGGCCTTTTGGACAAGCCTCAGGCTTCTGGGGAAGGGTCTTTGTTGGAACTAGTGCGCGAGATTATCGGGTTCGTTTCGAGTAAGATCCTTGACCGTGTTTTGGAAACCGCCACTTCTTCTGCAGGCGGGGTGTTCGGGTTTGCAATGACGAGCATTTCTGCTCTCTTGAACGACCCGGGTTCAGCCATGGGAAAGTTAGTGGGGATGCTGAAGGGCTTATTGGAGGGGACTGGTTCGTCCATGGGAGGGGTGCGAGGGATTGTTGAGAGCTTGGTGGAGAAGGTGGCCGAGTTGGGTCTGGGAGTGGCAAGCTCTTCAGCATCTGGTTGGTTTGAAGCTGTGAAAAAAGCCATGGATTTGGTGATCGAGTCTGGTTTTACCGTTGGAGGGTTAGTTGAGAAGACCAAGGCTGCATTGGAGGTTCTCCACATGGAAGACCTTCGAAGCCTTATTCAAAGCCTTGCTAGGCTAGGTGTGAATATGACTATTAGTTATTTTTTAGGTTAA

Homology

[Close]

BLAST of CmoCh17G012650 vs. TrEMBL
Match: A0A0A0K6V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368070 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.7e-68
Identity = 156/279 (55.91%), Postives = 200/279 (71.68%), Query Frame = 1


Query: 9   LASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALQ 68
           + ST LLLLLLIPSLK++ING NSL TL  CLF KAPPC+++S L A++ PAEA L A Q
Sbjct: 1   MVSTFLLLLLLIPSLKIIINGFNSLSTLAICLFLKAPPCLILSFLKAIKLPAEAFLSAFQ 60

Query: 69  SLADALKWVFVSSVEMGLGIIGSFLMAVLGALKNVVFGSFGE-LGSVFGGLLDKPQASGE 128
           SL +ALK +FVS++EMG GII SF+M VL A+ NVVFGSF E   S FGGLL+  + S E
Sbjct: 61  SLGEALKSIFVSTIEMGFGIISSFVMGVLEAVMNVVFGSFVESSASAFGGLLENTKGSWE 120

Query: 129 G-SLLELVREIIGFVSSKILDRVLETATSSAGGVFGFAMTSISALLNDPGSAMGKLVGML 188
           G +L E VR II      +L +V E ATS AGG+F F MT++S + N+PGS +G LV  L
Sbjct: 121 GFNLFEQVRGIIESFCEFVLQQVWEIATSFAGGMFEFTMTNMSTMFNEPGSVIGGLVETL 180

Query: 189 KG-LLEGTGSSMGGVRGIVESLVEKVAELGLGVASSSASGWFEAVKKAMDLVIESGFTVG 248
           KG L++G GS M GV+GIVE L+EK+      VA+SS  G FE VK   +LV++SG++VG
Sbjct: 181 KGSLMDGVGSWMEGVQGIVERLIEKMVNTSSEVANSSTYGLFEIVKTVFNLVVDSGYSVG 240

Query: 249 GLVEKTKAALEVLHMEDLRSLIQSLARLGVNMTISYFLG 285
           GLVEKT+  LE+L ME LR +I ++A++ VNM I+Y  G
Sbjct: 241 GLVEKTRTGLEILKMEKLRGIIVNIAKISVNMVINYLFG 279

[Close]

BLAST of CmoCh17G012650 vs. TrEMBL
Match: B9SYK4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1416590 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 1


Query: 18  LLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALQSLADALKWV 77
           ++I  +KL+   +N+   LV  L F+    +LV ++  LR P EA+ GALQ +A+A+K  
Sbjct: 1   MIIFLVKLICFAINTASNLVSRLIFRVTAYLLVLIIQGLRLPGEAAHGALQQIAEAIKTC 60

Query: 78  FVSSVEMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLLDKPQASGEG---SLLELV 137
           F   +E+ + +I S + +    L   V GS    GS  GGL++K + S +G    L EL 
Sbjct: 61  FEYIMELVMEMISSIISSSFDLLIEAVTGSASFTGSAIGGLVEKARTSFDGLLTDLPELA 120

Query: 138 REIIGFVSSKILD 148
            E  G VS+ + D
Sbjct: 121 EEFSGMVSTAVTD 133

[Close]

BLAST of CmoCh17G012650 vs. NCBI nr
Match: gi|778730356|ref|XP_011659765.1| (PREDICTED: uncharacterized protein LOC105436268 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 6.8e-68
Identity = 156/279 (55.91%), Postives = 200/279 (71.68%), Query Frame = 1


Query: 9   LASTLLLLLLLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALQ 68
           + ST LLLLLLIPSLK++ING NSL TL  CLF KAPPC+++S L A++ PAEA L A Q
Sbjct: 1   MVSTFLLLLLLIPSLKIIINGFNSLSTLAICLFLKAPPCLILSFLKAIKLPAEAFLSAFQ 60

Query: 69  SLADALKWVFVSSVEMGLGIIGSFLMAVLGALKNVVFGSFGE-LGSVFGGLLDKPQASGE 128
           SL +ALK +FVS++EMG GII SF+M VL A+ NVVFGSF E   S FGGLL+  + S E
Sbjct: 61  SLGEALKSIFVSTIEMGFGIISSFVMGVLEAVMNVVFGSFVESSASAFGGLLENTKGSWE 120

Query: 129 G-SLLELVREIIGFVSSKILDRVLETATSSAGGVFGFAMTSISALLNDPGSAMGKLVGML 188
           G +L E VR II      +L +V E ATS AGG+F F MT++S + N+PGS +G LV  L
Sbjct: 121 GFNLFEQVRGIIESFCEFVLQQVWEIATSFAGGMFEFTMTNMSTMFNEPGSVIGGLVETL 180

Query: 189 KG-LLEGTGSSMGGVRGIVESLVEKVAELGLGVASSSASGWFEAVKKAMDLVIESGFTVG 248
           KG L++G GS M GV+GIVE L+EK+      VA+SS  G FE VK   +LV++SG++VG
Sbjct: 181 KGSLMDGVGSWMEGVQGIVERLIEKMVNTSSEVANSSTYGLFEIVKTVFNLVVDSGYSVG 240

Query: 249 GLVEKTKAALEVLHMEDLRSLIQSLARLGVNMTISYFLG 285
           GLVEKT+  LE+L ME LR +I ++A++ VNM I+Y  G
Sbjct: 241 GLVEKTRTGLEILKMEKLRGIIVNIAKISVNMVINYLFG 279

[Close]

BLAST of CmoCh17G012650 vs. NCBI nr
Match: gi|223529319|gb|EEF31287.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 63.9 bits (154), Expect = 5.1e-07
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 1


Query: 18  LLIPSLKLLINGLNSLPTLVFCLFFKAPPCVLVSLLNALRPPAEASLGALQSLADALKWV 77
           ++I  +KL+   +N+   LV  L F+    +LV ++  LR P EA+ GALQ +A+A+K  
Sbjct: 1   MIIFLVKLICFAINTASNLVSRLIFRVTAYLLVLIIQGLRLPGEAAHGALQQIAEAIKTC 60

Query: 78  FVSSVEMGLGIIGSFLMAVLGALKNVVFGSFGELGSVFGGLLDKPQASGEG---SLLELV 137
           F   +E+ + +I S + +    L   V GS    GS  GGL++K + S +G    L EL 
Sbjct: 61  FEYIMELVMEMISSIISSSFDLLIEAVTGSASFTGSAIGGLVEKARTSFDGLLTDLPELA 120

Query: 138 REIIGFVSSKILD 148
            E  G VS+ + D
Sbjct: 121 EEFSGMVSTAVTD 133

The following BLAST results are available for this feature:

BLAST of CmoCh17G012650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V2_CUCSA	4.7e-68	55.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368070 PE=4 SV=1	[more]
B9SYK4_RICCO	3.5e-07	34.59	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1416590 PE=4 SV=1	[more]

BLAST of CmoCh17G012650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730356\|ref\|XP_011659765.1\|	6.8e-68	55.91	PREDICTED: uncharacterized protein LOC105436268 [Cucumis sativus]	[more]
gi\|223529319\|gb\|EEF31287.1\|	5.1e-07	34.59	conserved hypothetical protein [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012650.1	CmoCh17G012650.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G012650	Cucsa.387750	Cucumber (Gy14) v1	cgycmoB1076
CmoCh17G012650	Cla014902	Watermelon (97103) v1	cmowmB325
CmoCh17G012650	Csa7G368070	Cucumber (Chinese Long) v2	cmocuB374
CmoCh17G012650	MELO3C021109	Melon (DHL92) v3.5.1	cmomeB314
CmoCh17G012650	ClCG09G008470	Watermelon (Charleston Gray)	cmowcgB302
CmoCh17G012650	CSPI07G14810	Wild cucumber (PI 183967)	cmocpiB377
CmoCh17G012650	Lsi02G021360	Bottle gourd (USVL1VR-Ls)	cmolsiB334
CmoCh17G012650	Cp4.1LG12g10700	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G012650	CsaV3_7G026590	Cucumber (Chinese Long) v3	cmocucB0450
CmoCh17G012650	Cla97C09G171230	Watermelon (97103) v2	cmowmbB373
CmoCh17G012650	Bhi09G001056	Wax gourd	cmowgoB0492
CmoCh17G012650	Carg11474	Silver-seed gourd	carcmoB0021

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G012650	Cucurbita moschata (Rifu)	cmocmoB311
CmoCh17G012650	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G012650	Cucurbita maxima (Rimu)	cmacmoB888
CmoCh17G012650	Cucurbita pepo (Zucchini)	cmocpeB343
CmoCh17G012650	Cucumber (Gy14) v2	cgybcmoB903
CmoCh17G012650	Melon (DHL92) v3.6.1	cmomedB360
CmoCh17G012650	Silver-seed gourd	carcmoB0112