MELO3C017987 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C017987
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMediator of RNA polymerase II transcription subunit 28
Locationchr7 : 26295396 .. 26300191 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGCGCCTTTTTGTTTCTCCAAGTTTCTCTCACGAGCCATCTTAGCCTTCTGACCATTGCCTCCTCCCATGGCGGAAATCGATTGAGGAAATACAGAAAGGGGATAAGGCGACGATTTTGCTCCCTCTTTGCGTTGGAAGGAAACAGAGGAGACCGCTGATTAAAAGAGAAAACAGAATTTTCTTTTTTCTTCCTTTCCCACTAGTTACGCGGAATGCACTTCCCACTCGCACTCCGTAGATGAATATAACATTTCCCTTTTCCTCCTTACCTTCGAACAAATGTTCCAAATAAATTATTATTTTAGCTTAAGATTATTAAGATCATGTCTCTTTTTTGACAATATTCATGAAAATTTTGAAAAACTTTTATGTAAATAGATAGATGTTACTGTGAATGATTTTAAATTAAAGGATATAATCGATATTAAAGCTACATTTACTCAAATAAAAACTTTCATAAATCAACGAGAATAAAAAATGTGTCTTATTTGATTACTTCTAGTCGTGTTAATTTGCTATGCATAGGTTACTTTTAAACATTTCATCCTTATTTTGGAGTCCATTCGTTGAGATTGCAAATTGGTAAAGTAAAAGGCAATTGAGGAATATATGAATGTTATGAGGGTAAGACGTGGATTAAGGAAAGAAAATTATTTTAAATGAAAGGAGAGGAAAGAACATAACAATAATATATAAATTGGAGAAAAAAAGAGCGAAGAAGTGAAGGAAGGCGTAGGTAGTAGATTCCTCCATCTCCTCCTCCTTTCCTTTGCGTCCGCCGTCCGACCAACAGTCCCTCGCGCATCAAACCTACGAGCTCTTGCTCACTCAGTTCGAACAAGTTGCGTAGCGTCGTTTATTCTCCATTTGGCACTCCAAGTTGTGCATCACGTTTTTCACGACTGGGTGTGTCTTGCAGCAACGTTTTTGGCTTGTGGGTAAGCTTTCGACTGTTACCCACACTTCGATTGGCTTCAAATCAGTTTATTGCTTTATTTTTCTTTTCGAAATGGAGTTGAGTGTTTAAATTGTTATTCTCAGCTCTTGAAGCTTTTCTTTTTTTTTTTTTGTGTTTAGGTAAATTTTTAAGTATTAGATCAAGGTTCAGCGAGGTTGGACATGTTTTGGAATAGTTAGGACTTGATTAATGTGTCTTAGATCCGTCTTTGACATGTAAAAGTTTGTTGGTTGTAGTTTTGGGTTAATTCAGAGTGATTAATTGAGGGTAGTGGTAGAGTTTGGAACAGAATATTTCGATTGAAAAATATATCGGTTTTGATCAAGGTTGTTGAACTAATTTCTAACACTAAAACATGATGTTTGATCATGGAAGTGGATTTTTGGATCGAGAATTATAGGGCTTTTGGTGGAAGTGGTTTCCCACACCCATTCCACAATGTAAAGATATGTTTTGACTGTTTTGAATTGATAAATGGTTGAAAATGTGTTTTGGATGTTTGAAAATTTGTTTTGTACCATTTGAGTTTATTGAATCTGCTTATGATGTTTTAAATGTTTTCCTACTAGAAAATATGTTTTATGTGATTTGAGAATCGACTAGTATTTTGTATTCTTTTAGTTGATTTTGTCGAACCAAATTATATGACTATTTGGAACTAAGAAGCATCGATATGGATTCGAGACACAAATATGGCATGGCACAGACACAACATATGTCAATTTTTAAAATCTAGGACACAACACAAGGACACATTAATTAAAATGCACATTTTAAAAATTATATATTATTTTTATACCAAAAGAAAGTTCGGAAGTAAATGGGTTGATGCATTCATCTGTCTAAGAAACTTAGTTTTTATTTATTTGACACCCAAATTTTGTTATTATTGTCATGTGTCTTTTTAGTCTACTCAACAAATGTTCTATGCATATTTAACTGGTTTATTATACTAATAAGTGTTTGATATATGTCCAATAAGTATTGGAGTGTCAAAGTGTCCAACATGTATCAACACGAACAGGCTAGCCAAACTAAAGTGTTAGTGCTTCTTAGGTTTTGAGTGATGGTTGGAAGTGTTTAGACTAATTTTGAATTGAAAGTGTTTGTGTCTTGACTTTGGTTACTTCTCAAAACTTTTGAAAGCTTTGATTTGATGAATTCTATTTTCAGAATTCCTATTTGAAACTGCATGTTTTGTTGCCAATATTTCTGAATTATTTGATTAGGGCTACCCATATATGCCAGTTTTTGTGTTTTGAGGATTGTATGATATTTTTGTTGCATCCAAATTTAAAAATCTGTTATGATTGAAGCTTATTTGTGAAAAGACAAATATTTGTGGTTTGACATTCCTTTGAATGAAGATTCATGTGTGTGTTGCACTCACATGGCCTCACACTTATTTGATTGTTATTCTAGTCGATTGTTAATTGACCTCTCTTTTGGTTTGGTTGATTTTTAATCGGATCTCTGCTATTCTGGTCAATTGTAAACAGACATCTTTGGCGTTCTGACACAGAACTTCAAGGGATATCTACATTAGGATTTGATAGTTTGACCTAGAACTTGTTTATAATAAATTATCTCTGCTGATTTGTGTAAGTTGCAAAAGTTTATAATGGTTACGTTTTCACATTTTCTGTTTTAATAGCTGTATTGAAAAAAAATACGAGCTGTTACAGTCTTGTTCTTAAAAGAAGTTGGGTTCTGGCTTTTACCTCTTTCTGTTGGCCTTTGATTCACTACTACAGCTTATACTTTCTATTTTTAGTCTTATAATACAATTAAGGAAGTCTTTATGCTCAGGTTAGAATTACTACTGCTCACGATGAAAATGGCAGTTTTCAAGCATCTGGCTTTAAGTTTCAATTATTTTTATTTACTTTTATGTGCCATTATTGTGCCATAGGTTGTATATGTTGATGATTCTCGACTCTTTTTCATGCCATTATGTTCATGTAGTTGCAATATATATTTTTTTTGGTTCAGTTTGTTGCTCATATGTTGACGGGACTTTAAATAAGTACAACCCTGATGCCTATAGAATTGCTTTATGTTTTTCTATTAGTAAACTTGTCCAAGAATTGAAATGGAGTTTTGATTTTGACAAAGGATATGGCTGAACGACAATCACTTGACCAGCAACATTCACTTGATCCACAATCACAATCATCACAATCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCTAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGGTCAGTAACTGAACCCTCCCCTTTGATTCTTAAGTATAATTAGATTCTGAAAGCACAATGTAAAGTATTGTTTGGGTGGTTACCTTTACACATAGTTCGTTTGCTCTTAATAATTTTTGTATTATAGATTTAGATTACACTAAGCTAGTAGAGATTATCTTAATGTGCCCTCCAGTTTCTTCATAGCTATAGTACTCTCTTATGGATCTTCTGTTTCCTTTGCAAGTTCGCTGCTTGCTCTGCACGGACAGCAGCTGTAAGCTAAGGGAGCTATCTCTTAGTATTGTTTCATTCAACTAGTTCATTTGCTCTCCTCAAGCATGACAATCTGTAAATCAACTTTCATGTCAATGGTTCTGCATGAAAATGATTTCATCATGTTACATTTCATAATAATGGAGGGGTCTGCTGCTAAATCTTGATTAAATGCCCGACTGACCTCTTTAGTCATTGATTTTGTTGCATTAAAATTATGTGGATGTCTGGTTTCCGTTCATTTGTTGTATTGAAATATGTGGAGTGGAAGTGACGAGCCGTTTGACCCACTAAGTGGAGTTAATATGTTGTAGTTAGTAAGTTTTTGTTTGGGGTGTAGAGTTGTAAAATGGAGTTTTTTTGATAAATGTGAAAAGTAGAGAAAGAGAGGAAGATGAAGTTATTCAACAAATGTAAAAAATAGAGAGAGAGAGAAAAAAACATGGGGTTGCTCGATAGATATGAAAAGTAGATAAAGATGAGGAAAATGAAATTACTTGATAAATGTGCAACTTCAATAGATTTACTATTGAAGTTGAGTTGTTTAACACCTACCTAAAAAGTTGATTAACCAAACATCTAGCCATGCATGCTTTCAATTTGCTACTCACTTGTGGCTCGATGTTGGACCAAGGGAAGCTGGGCATTAAACTGATATGTCTGTGGTTAAGTGTTTGTGAAGAGTGAAGAAAATGACGCCATGTTTTGTTATTTGATTCAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGTAAACGCTTCTTTCCATTCAAAGAGGGACTCGCTTTTCTGATAAATGTAGATATGCTTTTATGTAATATTTGTGTTACTTCTTCCCATCAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGACATAATCAAGAAACAGGAGAGGCTCATTGAAGGATGGAAGAAGGATTTGAAAGAGCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAATAGAATAGGTTTGTGATCCCATGCTCTATTGTTTAGTTGTTTGTAGATCTTGTTAATTACATACTTTAACTGTGAATGTAGGTGGGGGCTTATTGACAAGTCTTGGTTAATTACATTCATTGTGCGGTTATGCCTAATTTTCTTCTTAAATTGTCGAAATAGTAACGAACTCTATGGATTTTAGCTTAAAAACGTATTTTATCATCTTAAAAGGAAGATAAAT

mRNA sequence

TTGGCGCCTTTTTGTTTCTCCAAGTTTCTCTCACGAGCCATCTTAGCCTTCTGACCATTGCCTCCTCCCATGGCGGAAATCGATTGAGGAAATACAGAAAGGGGATAAGGCGACGATTTTGCTCCCTCTTTGCGTTGGAAGGAAACAGAGGAGACCGCTGATTAAAAGAGAAAACAGAATTTTCTTTTTTCTTCCTTTCCCACTAGTTACGCGGAATGCACTTCCCACTCGCACTCCGTAGATGAATATAACATTTCCCTTTTCCTCCTTACCTTCGAACAAATGTTCCAAATAAATTATTATTTTAGCTTAAGATTATTAAGATCATGTCTCTTTTTTGACAATATTCATGAAAATTTTGAAAAACTTTTATGTAAATAGATAGATGTTACTGTGAATGATTTTAAATTAAAGGATATAATCGATATTAAAGCTACATTTACTCAAATAAAAACTTTCATAAATCAACGAGAATAAAAAATGTGTCTTATTTGATTACTTCTAGTCGTGTTAATTTGCTATGCATAGGTTACTTTTAAACATTTCATCCTTATTTTGGAGTCCATTCGTTGAGATTGCAAATTGGTAAAGTAAAAGGCAATTGAGGAATATATGAATGTTATGAGGGTAAGACGTGGATTAAGGAAAGAAAATTATTTTAAATGAAAGGAGAGGAAAGAACATAACAATAATATATAAATTGGAGAAAAAAAGAGCGAAGAAGTGAAGGAAGGCGTAGGTAGTAGATTCCTCCATCTCCTCCTCCTTTCCTTTGCGTCCGCCGTCCGACCAACAGTCCCTCGCGCATCAAACCTACGAGCTCTTGCTCACTCAGTTCGAACAAGTTGCGTAGCGTCGTTTATTCTCCATTTGGCACTCCAAGTTGTGCATCACGTTTTTCACGACTGGGTGTGTCTTGCAGCAACGTTTTTGGCTTGTGGGATATGGCTGAACGACAATCACTTGACCAGCAACATTCACTTGATCCACAATCACAATCATCACAATCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCTAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGACATAATCAAGAAACAGGAGAGGCTCATTGAAGGATGGAAGAAGGATTTGAAAGAGCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAATAGAATAGGTTTGTGATCCCATGCTCTATTGTTTAGTTGTTTGTAGATCTTGTTAATTACATACTTTAACTGTGAATGTAGGTGGGGGCTTATTGACAAGTCTTGGTTAATTACATTCATTGTGCGGTTATGCCTAATTTTCTTCTTAAATTGTCGAAATAGTAACGAACTCTATGGATTTTAGCTTAAAAACGTATTTTATCATCTTAAAAGGAAGATAAAT

Coding sequence (CDS)

ATGGCTGAACGACAATCACTTGACCAGCAACATTCACTTGATCCACAATCACAATCATCACAATCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCTAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGACATAATCAAGAAACAGGAGAGGCTCATTGAAGGATGGAAGAAGGATTTGAAAGAGCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAA
Homology
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BLAST of MELO3C017987 vs. Swiss-Prot
Match: MED28_ARATH (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana GN=MED28 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-41
Identity = 85/131 (64.89%), Postives = 108/131 (82.44%), Query Frame = 1 

Query: 12  SLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFME 71
           S +  S +  +  ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFME
Sbjct: 26  SPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFME 85

Query: 72  AAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKVKNDIIKKQERLIEGWKKDLKEQ 131
           AAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  +K +KEQ
Sbjct: 86  AAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKLVKEQ 145

Query: 132 LDKHNNELEKV 142
           ++KH +ELEKV
Sbjct: 146 IEKHRDELEKV 156

[Close]
BLAST of MELO3C017987 vs. TrEMBL
Match: A0A0A0KT19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.3e-70
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ +DQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKN+IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of MELO3C017987 vs. TrEMBL
Match: M5VMT0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013061mg PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.1e-57
Identity = 113/142 (79.58%), Postives = 127/142 (89.44%), Query Frame = 1 

Query: 1   MAERQSLDQQ-HSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ 60
           MAERQ+ DQQ H +D Q QS Q  REDM+A V+ALEAALLPCLPARELQAIDRSPHPSHQ
Sbjct: 1   MAERQAADQQQHQIDAQMQSPQPQREDMVACVIALEAALLPCLPARELQAIDRSPHPSHQ 60

Query: 61  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERL 120
           +DVERHARDFMEAAKKLQLYFIGLQREDQPTK + LRKEI A+EEEL++K ++IKK ERL
Sbjct: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKAQQLRKEIDAMEEELRIKTELIKKHERL 120

Query: 121 IEGWKKDLKEQLDKHNNELEKV 142
           I+GWKKDLK+QLDKHN ELE+V
Sbjct: 121 IQGWKKDLKDQLDKHNTELERV 142

[Close]
BLAST of MELO3C017987 vs. TrEMBL
Match: W9QFH0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011099 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.3e-55
Identity = 108/140 (77.14%), Postives = 124/140 (88.57%), Query Frame = 1 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ LDQQH  DP  QS+ +P+EDMIA +MALEA+LLPCLPA+ELQAIDRSPHPSHQ+
Sbjct: 1   MAERQGLDQQHQTDPPLQSAGAPKEDMIACLMALEASLLPCLPAKELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQRE+QP K ETLRKEI+A+EEELK K +II K E+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREEQPNKAETLRKEIAAMEEELKHKTEIINKHEKLI 120

Query: 121 EGWKKDLKEQLDKHNNELEK 141
            GW+K+LK+QLDKH  ELE+
Sbjct: 121 LGWRKELKDQLDKHQTELER 140

[Close]
BLAST of MELO3C017987 vs. TrEMBL
Match: A0A059BS09_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02473 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 8.7e-55
Identity = 108/141 (76.60%), Postives = 123/141 (87.23%), Query Frame = 1 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           M+ERQ+LDQQH +DP  QS Q P+EDM+A V ALE ALLPCLPARELQAIDRS HPSHQ+
Sbjct: 1   MSERQALDQQHQVDPHLQSPQHPKEDMLACVTALEEALLPCLPARELQAIDRSQHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQ+YFI LQREDQPT+ E L KEI  +EEELK+K ++IKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQVYFISLQREDQPTEAEKLMKEIVMMEEELKIKTELIKKQERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           +GW+KDLK+QLDK N ELEKV
Sbjct: 121 QGWRKDLKDQLDKINCELEKV 141

[Close]
BLAST of MELO3C017987 vs. TrEMBL
Match: A0A061DRS6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_004672 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.3e-54
Identity = 108/140 (77.14%), Postives = 124/140 (88.57%), Query Frame = 1 

Query: 2   AERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVD 61
           +ERQ L     LDPQ QS+QS REDMI++V+ALE ALLPCLPARELQAIDRSPHPSHQ+D
Sbjct: 3   SERQELQ----LDPQIQSAQSSREDMISWVVALETALLPCLPARELQAIDRSPHPSHQID 62

Query: 62  VERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLIE 121
           VERHARDFMEAAKKLQLYFIGLQRED+PT+ E LRKEI+ +EEELKVK++II  QERLI+
Sbjct: 63  VERHARDFMEAAKKLQLYFIGLQREDRPTRAEMLRKEIATMEEELKVKSEIINNQERLIQ 122

Query: 122 GWKKDLKEQLDKHNNELEKV 142
           GW+KDL +QLDKHN ELE+V
Sbjct: 123 GWRKDLTDQLDKHNTELERV 138

[Close]
BLAST of MELO3C017987 vs. TAIR10
Match: AT3G52860.1 (AT3G52860.1 unknown protein)

HSP 1 Score: 170.6 bits (431), Expect = 6.8e-43
Identity = 85/131 (64.89%), Postives = 108/131 (82.44%), Query Frame = 1 

Query: 12  SLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFME 71
           S +  S +  +  ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFME
Sbjct: 26  SPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFME 85

Query: 72  AAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKVKNDIIKKQERLIEGWKKDLKEQ 131
           AAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  +K +KEQ
Sbjct: 86  AAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKLVKEQ 145

Query: 132 LDKHNNELEKV 142
           ++KH +ELEKV
Sbjct: 146 IEKHRDELEKV 156

[Close]
BLAST of MELO3C017987 vs. NCBI nr
Match: gi|659108768|ref|XP_008454378.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 2.3e-72
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLKEQLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]
BLAST of MELO3C017987 vs. NCBI nr
Match: gi|449469116|ref|XP_004152267.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-69
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ +DQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKN+IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of MELO3C017987 vs. NCBI nr
Match: gi|645261710|ref|XP_008236425.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Prunus mume])

HSP 1 Score: 231.9 bits (590), Expect = 7.1e-58
Identity = 114/142 (80.28%), Postives = 127/142 (89.44%), Query Frame = 1 

Query: 1   MAERQSLDQQ-HSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ 60
           MAERQ+ DQQ H +D Q QS Q  REDM+A V+ALEAALLPCLPARELQAIDRSPHPSHQ
Sbjct: 1   MAERQAADQQQHQIDAQMQSPQPQREDMVACVIALEAALLPCLPARELQAIDRSPHPSHQ 60

Query: 61  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERL 120
           +DVERHARDFMEAAKKLQLYFIGLQREDQPTK E LRKEI A+EEEL++K ++IKK ERL
Sbjct: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKAEQLRKEIDAMEEELRIKTELIKKHERL 120

Query: 121 IEGWKKDLKEQLDKHNNELEKV 142
           I+GWKKDLK+QLDKHN ELE+V
Sbjct: 121 IQGWKKDLKDQLDKHNTELERV 142

[Close]
BLAST of MELO3C017987 vs. NCBI nr
Match: gi|595797722|ref|XP_007201305.1| (hypothetical protein PRUPE_ppa013061mg [Prunus persica])

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-57
Identity = 113/142 (79.58%), Postives = 127/142 (89.44%), Query Frame = 1 

Query: 1   MAERQSLDQQ-HSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ 60
           MAERQ+ DQQ H +D Q QS Q  REDM+A V+ALEAALLPCLPARELQAIDRSPHPSHQ
Sbjct: 1   MAERQAADQQQHQIDAQMQSPQPQREDMVACVIALEAALLPCLPARELQAIDRSPHPSHQ 60

Query: 61  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERL 120
           +DVERHARDFMEAAKKLQLYFIGLQREDQPTK + LRKEI A+EEEL++K ++IKK ERL
Sbjct: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKAQQLRKEIDAMEEELRIKTELIKKHERL 120

Query: 121 IEGWKKDLKEQLDKHNNELEKV 142
           I+GWKKDLK+QLDKHN ELE+V
Sbjct: 121 IQGWKKDLKDQLDKHNTELERV 142

[Close]
BLAST of MELO3C017987 vs. NCBI nr
Match: gi|658061269|ref|XP_008366497.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28-like [Malus domestica])

HSP 1 Score: 229.9 bits (585), Expect = 2.7e-57
Identity = 111/141 (78.72%), Postives = 124/141 (87.94%), Query Frame = 1 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ +DQQH  D Q QS  +PREDM++ VMALE ALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQVVDQQHQSDAQMQSQMAPREDMVSCVMALEVALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQRED PTK E LRKEI A+EEEL++K +IIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDLPTKAEQLRKEIDAMEEELRIKTEIIKKHERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           +GWK +LK+QLDKHN ELE+V
Sbjct: 121 QGWKXELKDQLDKHNTELERV 141

The following BLAST results are available for this feature:
BLAST of MELO3C017987 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MED28_ARATH1.2e-4164.89Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana G... [more]
BLAST of MELO3C017987 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT19_CUCSA7.3e-7095.74Uncharacterized protein OS=Cucumis sativus GN=Csa_4G00990 PE=4 SV=1[more]
M5VMT0_PRUPE1.1e-5779.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013061mg PE=4 SV=1[more]
W9QFH0_9ROSA1.3e-5577.14Uncharacterized protein OS=Morus notabilis GN=L484_011099 PE=4 SV=1[more]
A0A059BS09_EUCGR8.7e-5576.60Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02473 PE=4 SV=1[more]
A0A061DRS6_THECC4.3e-5477.14Uncharacterized protein OS=Theobroma cacao GN=TCM_004672 PE=4 SV=1[more]
BLAST of MELO3C017987 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52860.16.8e-4364.89 unknown protein[more]
BLAST of MELO3C017987 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108768|ref|XP_008454378.1|2.3e-72100.00PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo][more]
gi|449469116|ref|XP_004152267.1|1.1e-6995.74PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativ... [more]
gi|645261710|ref|XP_008236425.1|7.1e-5880.28PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Prunus mume][more]
gi|595797722|ref|XP_007201305.1|1.6e-5779.58hypothetical protein PRUPE_ppa013061mg [Prunus persica][more]
gi|658061269|ref|XP_008366497.1|2.7e-5778.72PREDICTED: mediator of RNA polymerase II transcription subunit 28-like [Malus do... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016592 mediator complex
molecular_function GO:0016740 transferase activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU50550melon EST collection version 4.0transcribed_cluster
MU66560melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017987T3MELO3C017987T3mRNA
MELO3C017987T2MELO3C017987T2mRNA
MELO3C017987T1MELO3C017987T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU50550MU50550transcribed_cluster
MU66560MU66560transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C017987Csa4G00990Cucumber (Chinese Long) v2cumeB312
MELO3C017987Cla006410Watermelon (97103) v1mewmB497
MELO3C017987ClCG10G010560Watermelon (Charleston Gray)mewcgB453
MELO3C017987Cla97C10G193490Watermelon (97103) v2mewmbB463
MELO3C017987Bhi11G000967Wax gourdmewgoB564
MELO3C017987CSPI04G00530Wild cucumber (PI 183967)cpimeB310
MELO3C017987Cucsa.097400Cucumber (Gy14) v1cgymeB111
MELO3C017987CmaCh16G003300Cucurbita maxima (Rimu)cmameB303
MELO3C017987CmoCh16G003490Cucurbita moschata (Rifu)cmomeB298
MELO3C017987Lsi03G010350Bottle gourd (USVL1VR-Ls)lsimeB269
MELO3C017987CsGy4G000460Cucumber (Gy14) v2cgybmeB269
MELO3C017987Carg19678Silver-seed gourdcarmeB0297
MELO3C017987CsaV3_4G000480Cucumber (Chinese Long) v3cucmeB315
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C017987Cucurbita moschata (Rifu)cmomeB692
MELO3C017987Wild cucumber (PI 183967)cpimeB308
MELO3C017987Cucumber (Chinese Long) v2cumeB309
MELO3C017987Cucumber (Chinese Long) v2cumeB562
MELO3C017987Cucurbita pepo (Zucchini)cpemeB201
MELO3C017987Cucurbita pepo (Zucchini)cpemeB422
MELO3C017987Cucumber (Gy14) v2cgybmeB268
MELO3C017987Silver-seed gourdcarmeB0383
MELO3C017987Cucumber (Chinese Long) v3cucmeB310
MELO3C017987Melon (DHL92) v3.5.1memeB094
MELO3C017987Melon (DHL92) v3.5.1memeB154
MELO3C017987Cucumber (Gy14) v1cgymeB569
MELO3C017987Cucurbita maxima (Rimu)cmameB700