CmoCh16G003490 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G003490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mediator of RNA polymerase II transcription subunit 28
Location	Cmo_Chr16 : 1611887 .. 1613353 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCGCATCGGCGACTCAGAATCTACGGTTAGTGAAGAATTCTCAGTTACCGCCCAAAGGAAGAACTCCGGAGCTGGACGGCAAATTCACCGCTTCTGCGACCGACCGAGCTCGTCGTCCTTCACATCCTTCTTCTTATCGAGTATGCTCTCCTTCATCTGCTGTGTTCATGTGCTTTTTTAGGGTTTATACTCCTAGGGCTGAAAAATAGTACTTGCTGTACGTTTTGTTTAGTTTCTTTGTCGATGAATTGAAATGGAGATTTGATTGTGGTCACAAGATATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAAGTCAGTTACTAATCCCTCCCCTTAAACTTTTGTGCATTCCAGATTTAATGTTGCACTAAGCTGGCAGATAATAGCATAATGTGACCTCAAGTTTCTTCATAATTATAATAGCATCTTATAATGGATACCCTTTGCAAGTTCTCTGTTTGATCTGCATAGACAAACAGCTTTATACAGTCAGTAAAGCAACTTTCCTGAGTAAATCCTCATTAAATTTGGTTCATCATGTTCTGTTTCATATGCTGGAGGTCTGCTGCTGTATCTGGAGATTTTGGTGCATTAAAATTATGTGGACGTGTGGTTTTCTATGAATTTGTTTTATTGAAATATGTGAAGTGGAAGTGACATTTAGATCTAGAAGTAGCATGAATGTCTGTAATCTACGACTCACAAATGGCTCGACATAGGACCGGGGGGATGCTCGGCGTTGAACTGATATTGTCTGTGGTTAGGTGTTTGTAAACAGTGAAGAAAATGACACCCTGGTTTGTTTTTGCTTCAGTTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGTAAATAATCAATCAAGCACCTTATTCATACTATTCTTTTTTGTAACATTTGTTTGTTCTACTTATCATCAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAGTAGAATAGGCTTTCGATCCCAATGCTCTATTGCTTAGTTTTTTTTTTTGTAGATCATGTCAATTTCATACATTCACAACTAATCAATGGTGGGGTATTGTTTGCCATAGACGTTTTTATGTAGACACTTAAATGCATTCACCAAATAACATAGACCTACTCCTCCTACTCCTTCACATGATCAAA

mRNA sequence

GATCGCATCGGCGACTCAGAATCTACGGTTAGTGAAGAATTCTCAGTTACCGCCCAAAGGAAGAACTCCGGAGCTGGACGGCAAATTCACCGCTTCTGCGACCGACCGAGCTCGTCGTCCTTCACATCCTTCTTCTTATCGATTTCTTTGTCGATGAATTGAAATGGAGATTTGATTGTGGTCACAAGATATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAGTAGAATAGGCTTTCGATCCCAATGCTCTATTGCTTAGTTTTTTTTTTTGTAGATCATGTCAATTTCATACATTCACAACTAATCAATGGTGGGGTATTGTTTGCCATAGACGTTTTTATGTAGACACTTAAATGCATTCACCAAATAACATAGACCTACTCCTCCTACTCCTTCACATGATCAAA

Coding sequence (CDS)

ATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAG

Homology

[Close]

BLAST of CmoCh16G003490 vs. Swiss-Prot
Match: MED28_ARATH (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana GN=MED28 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-38
Identity = 86/135 (63.70%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 15  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 74
           P ++S ++P        ED+++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 75  DFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKD 134
           DFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK KD++IKK  RL +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 135 LKDQLDKHNNELEKV 142
           +K+Q++KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

[Close]

BLAST of CmoCh16G003490 vs. TrEMBL
Match: A0A0A0KT19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-65
Identity = 130/141 (92.20%), Postives = 140/141 (99.29%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K++IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. TrEMBL
Match: M5VMT0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013061mg PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-54
Identity = 116/142 (81.69%), Postives = 128/142 (90.14%), Query Frame = 1


Query: 1   MAERQPLDQQ-NQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQ 60
           MAERQ  DQQ +QID Q+QS Q  REDMV+ V+ALEAALLPCLPARELQAIDRSPHPSHQ
Sbjct: 1   MAERQAADQQQHQIDAQMQSPQPQREDMVACVIALEAALLPCLPARELQAIDRSPHPSHQ 60

Query: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERL 120
           IDVERHARDFMEAAKKLQLYFIGLQREDQPTK + LRKEI A+EEEL++K ++IKK ERL
Sbjct: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKAQQLRKEIDAMEEELRIKTELIKKHERL 120

Query: 121 IEGWKKDLKDQLDKHNNELEKV 142
           I+GWKKDLKDQLDKHN ELE+V
Sbjct: 121 IQGWKKDLKDQLDKHNTELERV 142

[Close]

BLAST of CmoCh16G003490 vs. TrEMBL
Match: W9QFH0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011099 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.0e-52
Identity = 109/140 (77.86%), Postives = 126/140 (90.00%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+Q DP LQS+ +P+EDM++ +MALEA+LLPCLPA+ELQAIDRSPHPSHQI
Sbjct: 1   MAERQGLDQQHQTDPPLQSAGAPKEDMIACLMALEASLLPCLPAKELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQRE+QP K ETLRKEI+A+EEELK K +II K E+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREEQPNKAETLRKEIAAMEEELKHKTEIINKHEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEK 141
            GW+K+LKDQLDKH  ELE+
Sbjct: 121 LGWRKELKDQLDKHQTELER 140

[Close]

BLAST of CmoCh16G003490 vs. TrEMBL
Match: A0A061DRS6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_004672 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.8e-52
Identity = 106/133 (79.70%), Postives = 122/133 (91.73%), Query Frame = 1


Query: 9   QQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARD 68
           Q+ Q+DPQ+QS+QS REDM+S+V+ALE ALLPCLPARELQAIDRSPHPSHQIDVERHARD
Sbjct: 6   QELQLDPQIQSAQSSREDMISWVVALETALLPCLPARELQAIDRSPHPSHQIDVERHARD 65

Query: 69  FMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKDLK 128
           FMEAAKKLQLYFIGLQRED+PT+ E LRKEI+ +EEELK+K +II  QERLI+GW+KDL 
Sbjct: 66  FMEAAKKLQLYFIGLQREDRPTRAEMLRKEIATMEEELKVKSEIINNQERLIQGWRKDLT 125

Query: 129 DQLDKHNNELEKV 142
           DQLDKHN ELE+V
Sbjct: 126 DQLDKHNTELERV 138

[Close]

BLAST of CmoCh16G003490 vs. TrEMBL
Match: A0A059BS09_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02473 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-51
Identity = 110/141 (78.01%), Postives = 124/141 (87.94%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           M+ERQ LDQQ+Q+DP LQS Q P+EDM++ V ALE ALLPCLPARELQAIDRS HPSHQI
Sbjct: 1   MSERQALDQQHQVDPHLQSPQHPKEDMLACVTALEEALLPCLPARELQAIDRSQHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQ+YFI LQREDQPT+ E L KEI  +EEELK+K ++IKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQVYFISLQREDQPTEAEKLMKEIVMMEEELKIKTELIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+KDLKDQLDK N ELEKV
Sbjct: 121 QGWRKDLKDQLDKINCELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. TAIR10
Match: AT3G52860.1 (AT3G52860.1 unknown protein)

HSP 1 Score: 160.6 bits (405), Expect = 7.0e-40
Identity = 86/135 (63.70%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 15  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 74
           P ++S ++P        ED+++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 75  DFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKD 134
           DFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK KD++IKK  RL +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 135 LKDQLDKHNNELEKV 142
           +K+Q++KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

[Close]

BLAST of CmoCh16G003490 vs. NCBI nr
Match: gi|449469116|ref|XP_004152267.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.5e-65
Identity = 130/141 (92.20%), Postives = 140/141 (99.29%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K++IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. NCBI nr
Match: gi|659108768|ref|XP_008454378.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo])

HSP 1 Score: 252.7 bits (644), Expect = 3.8e-64
Identity = 130/141 (92.20%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. NCBI nr
Match: gi|657962880|ref|XP_008373041.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Malus domestica])

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 116/141 (82.27%), Postives = 127/141 (90.07%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ +DQQ Q D Q+QS  +PREDMVS VMALEAALLPCLPA+ELQAIDRSP PSHQI
Sbjct: 1   MAERQVVDQQQQSDAQMQSPTAPREDMVSCVMALEAALLPCLPAKELQAIDRSPLPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTK E LRKEI A+EEEL++K +IIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKAEQLRKEIDAMEEELRIKTEIIKKHERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GWKK+LKDQLDKHN ELE+V
Sbjct: 121 QGWKKELKDQLDKHNTELERV 141

[Close]

BLAST of CmoCh16G003490 vs. NCBI nr
Match: gi|658061269|ref|XP_008366497.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28-like [Malus domestica])

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ +DQQ+Q D Q+QS  +PREDMVS VMALE ALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQVVDQQHQSDAQMQSQMAPREDMVSCVMALEVALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQRED PTK E LRKEI A+EEEL++K +IIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDLPTKAEQLRKEIDAMEEELRIKTEIIKKHERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GWK +LKDQLDKHN ELE+V
Sbjct: 121 QGWKXELKDQLDKHNTELERV 141

[Close]

BLAST of CmoCh16G003490 vs. NCBI nr
Match: gi|645261710|ref|XP_008236425.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Prunus mume])

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-54
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 1


Query: 1   MAERQPLDQQ-NQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQ 60
           MAERQ  DQQ +QID Q+QS Q  REDMV+ V+ALEAALLPCLPARELQAIDRSPHPSHQ
Sbjct: 1   MAERQAADQQQHQIDAQMQSPQPQREDMVACVIALEAALLPCLPARELQAIDRSPHPSHQ 60

Query: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERL 120
           IDVERHARDFMEAAKKLQLYFIGLQREDQPTK E LRKEI A+EEEL++K ++IKK ERL
Sbjct: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKAEQLRKEIDAMEEELRIKTELIKKHERL 120

Query: 121 IEGWKKDLKDQLDKHNNELEKV 142
           I+GWKKDLKDQLDKHN ELE+V
Sbjct: 121 IQGWKKDLKDQLDKHNTELERV 142

The following BLAST results are available for this feature:

BLAST of CmoCh16G003490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED28_ARATH	1.2e-38	63.70	Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana G...	[more]

BLAST of CmoCh16G003490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT19_CUCSA	2.4e-65	92.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G00990 PE=4 SV=1	[more]
M5VMT0_PRUPE	2.5e-54	81.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013061mg PE=4 SV=1	[more]
W9QFH0_9ROSA	4.0e-52	77.86	Uncharacterized protein OS=Morus notabilis GN=L484_011099 PE=4 SV=1	[more]
A0A061DRS6_THECC	6.8e-52	79.70	Uncharacterized protein OS=Theobroma cacao GN=TCM_004672 PE=4 SV=1	[more]
A0A059BS09_EUCGR	1.5e-51	78.01	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02473 PE=4 SV=1	[more]

BLAST of CmoCh16G003490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52860.1	7.0e-40	63.70	unknown protein	[more]

BLAST of CmoCh16G003490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469116\|ref\|XP_004152267.1\|	3.5e-65	92.20	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativ...	[more]
gi\|659108768\|ref\|XP_008454378.1\|	3.8e-64	92.20	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]	[more]
gi\|657962880\|ref\|XP_008373041.1\|	1.2e-54	82.27	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Malus domesti...	[more]
gi\|658061269\|ref\|XP_008366497.1\|	1.2e-54	81.56	PREDICTED: mediator of RNA polymerase II transcription subunit 28-like [Malus do...	[more]
gi\|645261710\|ref\|XP_008236425.1\|	1.6e-54	82.39	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G003490.1	CmoCh16G003490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 92..141 scor
None	No IPR available	PANTHER	PTHR39117	FAMILY NOT NAMED	coord: 1..141 score: 2.0
None	No IPR available	PANTHER	PTHR39117:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28	coord: 1..141 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G003490	Cucsa.097400	Cucumber (Gy14) v1	cgycmoB0190
CmoCh16G003490	CmaCh16G003300	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G003490	Cla006410	Watermelon (97103) v1	cmowmB287
CmoCh16G003490	Csa4G00990	Cucumber (Chinese Long) v2	cmocuB322
CmoCh16G003490	MELO3C017987	Melon (DHL92) v3.5.1	cmomeB298
CmoCh16G003490	ClCG10G010560	Watermelon (Charleston Gray)	cmowcgB273
CmoCh16G003490	CSPI04G00530	Wild cucumber (PI 183967)	cmocpiB329
CmoCh16G003490	Lsi03G010350	Bottle gourd (USVL1VR-Ls)	cmolsiB294
CmoCh16G003490	MELO3C017987.2	Melon (DHL92) v3.6.1	cmomedB342
CmoCh16G003490	CsaV3_4G000480	Cucumber (Chinese Long) v3	cmocucB0385
CmoCh16G003490	Cla97C10G193490	Watermelon (97103) v2	cmowmbB316
CmoCh16G003490	CsGy4G000460	Cucumber (Gy14) v2	cgybcmoB465
CmoCh16G003490	Carg19678	Silver-seed gourd	carcmoB0402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G003490	Cucumber (Gy14) v1	cgycmoB0219
CmoCh16G003490	Cucumber (Gy14) v1	cgycmoB0625
CmoCh16G003490	Cucumber (Gy14) v1	cgycmoB0964
CmoCh16G003490	Cucurbita maxima (Rimu)	cmacmoB038
CmoCh16G003490	Cucurbita maxima (Rimu)	cmacmoB133
CmoCh16G003490	Cucurbita maxima (Rimu)	cmacmoB502
CmoCh16G003490	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G003490	Wild cucumber (PI 183967)	cmocpiB336
CmoCh16G003490	Wild cucumber (PI 183967)	cmocpiB344
CmoCh16G003490	Cucumber (Chinese Long) v2	cmocuB328
CmoCh16G003490	Cucumber (Chinese Long) v2	cmocuB337
CmoCh16G003490	Cucumber (Chinese Long) v2	cmocuB338
CmoCh16G003490	Melon (DHL92) v3.5.1	cmomeB304
CmoCh16G003490	Melon (DHL92) v3.5.1	cmomeB280
CmoCh16G003490	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G003490	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G003490	Cucurbita pepo (Zucchini)	cmocpeB321
CmoCh16G003490	Bottle gourd (USVL1VR-Ls)	cmolsiB291
CmoCh16G003490	Bottle gourd (USVL1VR-Ls)	cmolsiB298
CmoCh16G003490	Cucumber (Gy14) v2	cgybcmoB471
CmoCh16G003490	Cucumber (Gy14) v2	cgybcmoB732
CmoCh16G003490	Melon (DHL92) v3.6.1	cmomedB349
CmoCh16G003490	Melon (DHL92) v3.6.1	cmomedB317
CmoCh16G003490	Melon (DHL92) v3.6.1	cmomedB341
CmoCh16G003490	Silver-seed gourd	carcmoB0258
CmoCh16G003490	Silver-seed gourd	carcmoB0509
CmoCh16G003490	Cucumber (Chinese Long) v3	cmocucB0369
CmoCh16G003490	Cucumber (Chinese Long) v3	cmocucB0391
CmoCh16G003490	Cucumber (Chinese Long) v3	cmocucB0408
CmoCh16G003490	Cucumber (Chinese Long) v3	cmocucB0409
CmoCh16G003490	Watermelon (97103) v2	cmowmbB333
CmoCh16G003490	Wax gourd	cmowgoB0405
CmoCh16G003490	Wax gourd	cmowgoB0444
CmoCh16G003490	Wax gourd	cmowgoB0449
CmoCh16G003490	Cucurbita moschata (Rifu)	cmocmoB010
CmoCh16G003490	Cucurbita moschata (Rifu)	cmocmoB096
CmoCh16G003490	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh16G003490	Cucurbita moschata (Rifu)	cmocmoB296