Carg19678 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19678
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mediator of RNA polymerase II transcription subunit 28
Location	Cucurbita_argyrosperma_scaffold_133 : 113035 .. 114476 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACGGTTAGTGAAGAATTCTCAGTGTTACCGCCCAAAGGAAGAACTCCGGAGCTGGACGGCAAATTCACCCCTTCTGCGACCGACCGAGCTCGTCGTCCTTCACATCCTTCTTCTTATCGAGTATGCTCTCCTTCCTCTGCTGTGTTCATGTGCTTTTTTAGGGTTTATACTCCTAGGGCTGAAAAATAGTACTTGCTGTACGTTCTGTTTAGTTTCTTTGTCGATGAATTGAAATGGAGATTTGATTGTGGTCACAAGATATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAAGTCAGTTACTAATCCCTCCCCTTAAACTTTTGTGCATTCCAGATTTAATGTTGCACTAAGCTGGCAGATAATAGCATAATGTGACCTCAAGTTTCTTCATAATTAGCATCTTATAATGGATACCCTTTGCAAGTTCTCTGTTTGATCTGCAGAGACAACAGCTATATACAATCAGTAAAGCAACTTTCCTGAGTAAATCCTCATTAAATTTGGTTCATCATGTTCTGTTTCATATGCTGGAGGTCTGCTGCTGTATGTGGAGATTTTGGTGCATTAAAATTATGTGGACGTGTGGTTTTCTATGAATTTGTTTGATTGAAATATGTGAAGTGGAAGTGACATTTAGATCTAGAAGTAGCATGAATCTCTGTAATCTACGACTCACAAATGGCTCGACATAGGACCGGGGGGATGCTCGGCGTTGAACTGATATTGTCTGTGGTTAGGTGTTTGTAAACAGTGAAGAAAATGACACCCTGGTTTGTTTTTGCTTCAGTTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGTAAAATAATCAATCAAGCACCTTATGATAATACTATTCTTTTTTGTAACATTTGTTTGTTCTACTTATCATCAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAGGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAGTAGAATAGGCTTTCGATCCCAATGCTCTATTGCTTAGTTTTTTTTTGTAGATCATGTCAATTTCATACATTCACAACTAATCAATGGTGGGGTATTGTTTGCCATAGACGTTTTTATGTAGACACTTAAATGCATTCACCAAATAACATAGACCTACTCCTCCTACTCCTTCACATGATCAAA

mRNA sequence

CTACGGTTAGTGAAGAATTCTCAGTGTTACCGCCCAAAGGAAGAACTCCGGAGCTGGACGGCAAATTCACCCCTTCTGCGACCGACCGAGCTCGTCGTCCTTCACATCCTTCTTCTTATCGAGTATGCTCTCCTTCCTCTGCTGTGTTCATGTGCTTTTTTAGGGTTTATACTCCTAGGGCTGAAAAATAGTACTTGCTGTACGTTCTGTTTAGTTTCTTTGTCGATGAATTGAAATGGAGATTTGATTGTGGTCACAAGATATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAGGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAGTAGAATAGGCTTTCGATCCCAATGCTCTATTGCTTAGTTTTTTTTTGTAGATCATGTCAATTTCATACATTCACAACTAATCAATGGTGGGGTATTGTTTGCCATAGACGTTTTTATGTAGACACTTAAATGCATTCACCAAATAACATAGACCTACTCCTCCTACTCCTTCACATGATCAAA

Coding sequence (CDS)

ATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAGGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAG

Protein sequence

MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Homology

[Close]

BLAST of Carg19678 vs. NCBI nr
Match: XP_022922953.1 (mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022922954.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022984538.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_022984539.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_023552182.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >XP_023552183.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.2 bits (687), Expect = 7.7e-69
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of Carg19678 vs. NCBI nr
Match: XP_004152267.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN52780.1 hypothetical protein Csa_4G00990 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 6.7e-65
Identity = 130/141 (92.20%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K++IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of Carg19678 vs. NCBI nr
Match: XP_008454378.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >XP_008454380.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo])

HSP 1 Score: 252.7 bits (644), Expect = 7.5e-64
Identity = 130/141 (92.20%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of Carg19678 vs. NCBI nr
Match: XP_022149222.1 (mediator of RNA polymerase II transcription subunit 28 [Momordica charantia])

HSP 1 Score: 251.9 bits (642), Expect = 1.3e-63
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK+DIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLAKHNNELEKV 141

[Close]

BLAST of Carg19678 vs. NCBI nr
Match: XP_023920368.1 (mediator of RNA polymerase II transcription subunit 28-like isoform X2 [Quercus suber])

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 118/141 (83.69%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+QID Q+QSS  PR+DM++ VMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQMLDQQHQIDQQMQSSPPPRDDMIACVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFM+AAKKLQLYFIGLQREDQPTKVETL KEI+ +EEELK+K +IIKKQERLI
Sbjct: 61  DVERHARDFMDAAKKLQLYFIGLQREDQPTKVETLGKEIAMMEEELKIKTEIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+K+LKDQLDKHN ELE+V
Sbjct: 121 QGWRKELKDQLDKHNAELERV 141

[Close]

BLAST of Carg19678 vs. TAIR10
Match: AT3G52860.1 (unknown protein)

HSP 1 Score: 121.7 bits (304), Expect = 3.6e-28
Identity = 60/78 (76.92%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 27  MVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQRE 86
           +++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RE
Sbjct: 41  IMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFMGLKRE 100

Query: 87  DQ-PTKVETLRKEISAIE 104
           D+ P++ E+L+K+I+ +E
Sbjct: 101 DRAPSRAESLKKDIAVME 118

[Close]

BLAST of Carg19678 vs. Swiss-Prot
Match: sp|Q9LFA5|MED28_ARATH (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana OX=3702 GN=MED28 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.5e-27
Identity = 60/78 (76.92%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 27  MVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQRE 86
           +++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RE
Sbjct: 41  IMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFMGLKRE 100

Query: 87  DQ-PTKVETLRKEISAIE 104
           D+ P++ E+L+K+I+ +E
Sbjct: 101 DRAPSRAESLKKDIAVME 118

[Close]

BLAST of Carg19678 vs. TrEMBL
Match: tr|A0A0A0KT19|A0A0A0KT19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.5e-65
Identity = 130/141 (92.20%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K++IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of Carg19678 vs. TrEMBL
Match: tr|A0A1S3BZ89|A0A1S3BZ89_CUCME (mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 GN=LOC103494796 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.9e-64
Identity = 130/141 (92.20%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of Carg19678 vs. TrEMBL
Match: tr|A0A2N9EGY0|A0A2N9EGY0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1813 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.8e-57
Identity = 118/141 (83.69%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           M ERQ LDQQ QIDP LQSS  PR+DM++ VMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MGERQVLDQQLQIDPLLQSSPPPRDDMIACVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEI+ +EEELK+K++IIKKQER+I
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIAVMEEELKIKNEIIKKQERMI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+K+ KDQLDKHN ELE+V
Sbjct: 121 QGWRKESKDQLDKHNTELERV 141

[Close]

BLAST of Carg19678 vs. TrEMBL
Match: tr|A0A2R6RR30|A0A2R6RR30_ACTCH (Mediator of RNA polymerase II transcription subunit like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc02775 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 114/141 (80.85%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQPLDQQ+ +DP LQS   PREDM++ VMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQHPLDPHLQSPSPPREDMIACVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGL+REDQPTK ++LRKEI+ +EEELK+K ++I KQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLEREDQPTKADSLRKEIALMEEELKVKSELINKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+KDLKDQLDKHN EL +V
Sbjct: 121 QGWRKDLKDQLDKHNIELGRV 141

[Close]

BLAST of Carg19678 vs. TrEMBL
Match: tr|A0A2I4E741|A0A2I4E741_9ROSI (mediator of RNA polymerase II transcription subunit 28-like OS=Juglans regia OX=51240 GN=LOC108986875 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 4.2e-55
Identity = 115/141 (81.56%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+QIDPQLQSS  PR+DM + V ALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQALDQQHQIDPQLQSSPPPRDDMNACVTALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQRED+PTK ETL KEI+ +EEELK+K ++IKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDKPTKAETLGKEIAVMEEELKIKSELIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+K+L+DQL KHN ELE+V
Sbjct: 121 QGWRKELRDQLHKHNTELERV 141

The following BLAST results are available for this feature:

BLAST of Carg19678 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922953.1	7.7e-69	100.00	mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_...	[more]
XP_004152267.1	6.7e-65	92.20	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativ...	[more]
XP_008454378.1	7.5e-64	92.20	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]...	[more]
XP_022149222.1	1.3e-63	92.20	mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]	[more]
XP_023920368.1	1.5e-56	83.69	mediator of RNA polymerase II transcription subunit 28-like isoform X2 [Quercus ...	[more]

BLAST of Carg19678 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52860.1	3.6e-28	76.92	unknown protein	[more]

BLAST of Carg19678 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LFA5\|MED28_ARATH	6.5e-27	76.92	Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana O...	[more]

BLAST of Carg19678 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KT19\|A0A0A0KT19_CUCSA	4.5e-65	92.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1	[more]
tr\|A0A1S3BZ89\|A0A1S3BZ89_CUCME	4.9e-64	92.20	mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A2N9EGY0\|A0A2N9EGY0_FAGSY	5.8e-57	83.69	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1813 PE=4 SV=1	[more]
tr\|A0A2R6RR30\|A0A2R6RR30_ACTCH	1.4e-55	80.85	Mediator of RNA polymerase II transcription subunit like OS=Actinidia chinensis ...	[more]
tr\|A0A2I4E741\|A0A2I4E741_9ROSI	4.2e-55	81.56	mediator of RNA polymerase II transcription subunit 28-like OS=Juglans regia OX=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR034456	MED28

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19678-RA	Carg19678-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
IPR034456	Mediator of RNA polymerase II transcription subunit 28	PANTHER	PTHR39117	FAMILY NOT NAMED	coord: 1..141

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19678	Cla006410	Watermelon (97103) v1	carwmB0287
Carg19678	Csa4G00990	Cucumber (Chinese Long) v2	carcuB0322
Carg19678	MELO3C017987	Melon (DHL92) v3.5.1	carmeB0297
Carg19678	ClCG10G010560	Watermelon (Charleston Gray)	carwcgB0287
Carg19678	CSPI04G00530	Wild cucumber (PI 183967)	carcpiB0328
Carg19678	Cucsa.097400	Cucumber (Gy14) v1	carcgyB0343
Carg19678	CmaCh16G003300	Cucurbita maxima (Rimu)	carcmaB0406
Carg19678	CmoCh16G003490	Cucurbita moschata (Rifu)	carcmoB0402
Carg19678	Lsi03G010350	Bottle gourd (USVL1VR-Ls)	carlsiB269
Carg19678	CsGy4G000460	Cucumber (Gy14) v2	carcgybB0309
Carg19678	MELO3C017987.2	Melon (DHL92) v3.6.1	carmedB0308
Carg19678	CsaV3_4G000480	Cucumber (Chinese Long) v3	carcucB0328
Carg19678	Cla97C10G193490	Watermelon (97103) v2	carwmbB0302
Carg19678	Bhi11G000967	Wax gourd	carwgoB0381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19678	Cucumber (Chinese Long) v2	carcuB0323
Carg19678	Cucumber (Chinese Long) v3	carcucB0329
Carg19678	Bottle gourd (USVL1VR-Ls)	carlsiB267
Carg19678	Melon (DHL92) v3.5.1	carmeB0295
Carg19678	Melon (DHL92) v3.6.1	carmedB0306
Carg19678	Watermelon (Charleston Gray)	carwcgB0288
Carg19678	Watermelon (97103) v1	carwmB0289
Carg19678	Watermelon (97103) v2	carwmbB0303
Carg19678	Watermelon (97103) v2	carwmbB0305
Carg19678	Wax gourd	carwgoB0383
Carg19678	Silver-seed gourd	carcarB324
Carg19678	Cucumber (Gy14) v1	carcgyB0344
Carg19678	Cucumber (Gy14) v1	carcgyB0348
Carg19678	Cucurbita maxima (Rimu)	carcmaB0405
Carg19678	Cucurbita maxima (Rimu)	carcmaB0407
Carg19678	Cucurbita maxima (Rimu)	carcmaB0408
Carg19678	Cucurbita moschata (Rifu)	carcmoB0401
Carg19678	Cucurbita moschata (Rifu)	carcmoB0403
Carg19678	Cucurbita pepo (Zucchini)	carcpeB0407
Carg19678	Cucurbita pepo (Zucchini)	carcpeB0408
Carg19678	Cucurbita pepo (Zucchini)	carcpeB0409
Carg19678	Wild cucumber (PI 183967)	carcpiB0329