CSPI04G00530 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G00530
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Mediator of RNA polymerase II transcription subunit 28
Location	Chr4 : 267129 .. 271296 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAAAAGGAGCGGAGAAGTGAAGGAAGGCGTCGGTAGTAGACGCTCCGTCTCCTTCTCTTCCTTTCCTTTGCGTCCGCCGTCCGATCAACAGTTCCTCGAGAAGCAAACCGACGACCTCTTGCTCCACCTTTGACGGTGGAGCTACCTTGCGACCTGAACACTCAGTTCGAACAAGTTGCATATCATCGTTTCTTCTCCATTTCACACTACAAGTTCTGCATCACGTTTTTTCACGACTGGGTGTGTCTTGCAGCAACGTTTTTGGCTTGTGGGTAAGCTTTCGACTGTTACCTACATTTCGATTGGCTTCAAATCAGTTTATTGCTTCATTTTCCTTTTCGAAATGGAGTTGAGTGTTTAAATTGTTATTCTCAGCTCTTGAAACTCTTTTTTTTTTGTGTGTGTGTGCGTTTAGGTAAATTTTTGGGTATTAGATCAAGGTTCAGCAAGGTTGGACGTGTTTTGGAATAGTTAGGACTTGATTAGTGTGTCTTAGATCCGTCTTTGACTTGTGACAGTTTGTTGGTTGTAGTTTTGGGTTAATTCAGAGTGATTAATTAAGGGTAATGGTAGATTTTGGACAATACTATTTCGATTGAAAAACATATCGGGTTTCGATTAAGGTTGTTGAACTAATTTTTAACAATAAAGCATGATGTTTGATCATGGAAGTGGATTTTTGGATTGAGAATTATAGGGTTGTTGATGGAAGTGGTTTCCACACCCATTCCACAATGTAAATGTATGTCTTGACTGTTTTGATTTGATAAATGGTTGAAAATGTGTTTTGGGTGTTTGAAAATTTGTTTTGTACCATTTGAGTTTATTGAATCTGCTTATGATGTTGTAAATGTTTTCCTACTAGAAAATAAGTTTTATGTGATTTGAGAATCGACTAGTATTTTGTATTCTTTTAGTTGATTTTGTCGAACAAAAGTATATGACTATTTGGCATTGATATGGATACGAGACACAAATATGACATGGTACAAACACAACGATATGTCAATTTTTAAAATCTAGGATACAACACAATTAGGGGAAGTCTTTATGCTCAGGTTAGAATTACTACTGCTCACTATTGGATGAAAATGTCAGTTTTCAAGCTTCCGGCTATAAGTTTCAATTATTTTTATTTAATTTTATGTGCCATTATTGTGCCATAGGATGTACATGTTAATGATTCTTGACTCTTTTTCATGCCATTATGTTCATGTAGTTGTAATATATATATTATTTTGGTTCCGTTTGTTGCTCATATGTTGATGGGAATTTAAATAAGTACATCCCTCACGCCTATAGAATTGCTTTATGTTTTTCTATAAGTAAACTTGTCCAAGAATTGAAATGGAGTTTTGATTCTGTCAAAGGATATGGCTGAACGACAACCAATCGACCAACAACATTCGCTTGATCCACAATTGCAATCATCACAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCCGCAAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGGTCAGTAACTGAACCCTCCCCTTTGATTCTCAAGTGTAATTAGATTCTGAAAGCACAGTGTAAAGTACTGTTTGGGTGGTTAGCTTTATGAATAACTGTATCTCTTCCCCACCACATTTTTCCATATTATAGGATCTCTTCAATGGAATAAGAAGTTTTTTTTCCCTTTTATTCTTTTTGTTCTTTAGGGTGCAATAGTGCTTCATAACAATTTGTCATGAATGTTAATCTAAAGTTTTGGTCACTAGGGGTCTTCATAATGCGAGCTCTTTGTTTTTGTTGTTATTTTATTTACTATTCACGATGGTTTAACAATTTCTTATTATTGACTAGAAAAAAAAAGTGTTGCATAATGGTTGTTGAACCATTTTAAATTAAGATGAAGAGAAATTAGTAGATTTTGTTTTGTTTTGTTTATTTAGCAGAGAACTTGTAGGTGCAGAAAACAATAAATTGATGCAAAGAGTGACAGTTCATTGACCATTGTTTACTTTAAAGACAGGGGGTGGGTTGGGCTGAGGAAAATGCTGAACCAGTGTTTAGCTGTAGTTTGTAGATTTGTCAATCTTGAGGTTTCTGGGGCAGGTGGGGTAAGCGTGCACCTTCACTCCAAACTAGCATCTTAAATCCTCCACTTAGTTTGGCTTAATATTTGTAGGTATAAGATGCCAAATCTATGGGTCAAATGGCCCTCAAGTCTATTCTTGAGTTTCTTTCTTATTGAAGGAGACCAAAGGAGGCCTATACTACCTTTTGTCCCCAGAACTTTAACCATGTTGAAACTACCAGCCTACAGATCGATTCTAAAATAGTCAACTATTGTTGTCCTTTGCCTTGTATTGGAAACGATAATGCAACCACACAATTGGTTGCATACGATCGAGTCCTACCTTGCAGCATCAAGCACAGTTCCCAGACCCAATACAAAAACACATTCCCCGGTGATTGGATGTTTTAAGTTGTCTGCCTGTCTGGGTCGTTTCGGTTTCATCTGTTTGGAAAAACTTACGTACAACTACAATCCTGATCTTAGTGTTATACCAAGTGGGCAGATGAATACCTGATGATGCCTTCTCGCCTTCATCGTTTTGGTAGCATATGGCTTGTTTGTTTAAAAAAAGGGAAAAAGGCTTGCACCTATCAATGGATACAGGAAGTGATCTATTTGCTGGGCGGTCAGACAACAGTTAATTTGCTCTTTCGAAAAATTTCTTCATTTTCTGTCTAGCTCGACATTGTGTCTGAGTGTGGAGTAACTTGCTGGAGGGTAATTCTCATGTAATAAATATGTTTTAGTTTCCTGAACTAGTTCGTTTGCTCTTAAAATATTTTTATTCCAGATTTAGATTACACTAAGCTGGAAGAGATTATCTTAATGTATGCCTTCCAGTTTCTTCATAATTCTAGTACTATCTTGTGGACTTTCTGTTTCCTTTGCAAGTTCACTGCTTGCTCTGCACAGACAGCTGTAATAAGCTAAGGAAGCTATCTCTTAGTATTGTTTCATTCAACTAGTTCATCTGCTCTCCTCCAGCATGACAATCTGTAAATCAACTTTCATGTCAATGGTTCTGCATGAAAATGATTTCATCATGTTCCATTTCATTAATGGAGGGATCTGCTGCTAAATTTTGATTAAATGCCCGACTGATCTCTCTAGTCATTGATTTTGTTGCATTAAAATTATGTGGATTGTAATTTCCACTCATTTGTTGTACTGAAATATGTGGAGTGGAAGTGACGAGCCGTTTGACCCACTAAGTGGAGTTAATATGTTGCAGTTAGTAAGTTTGTATTTGGGGCTTAGAGTTGTAAAATGGAGTTTTTTGATAAATTTGAAAGTGTTTGCTATTGAAGTTGAGTTGTTTACACCTACCTAAAATGTTGATGAACCAAACAGCTAGCCATGCATGCCTTCAAGTTGCTATTCACTTGTGACTCGATGTCGGATTGAGGGAAACTGGGGGCATTGAACGATATGTCTGTGGTTAGGTGTTTCTAAAGAGTGAAGAAAAATGACACCATGTTTTATTATTTGCTTCAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAAGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGTAAACACTTCTTTTCCATTCAAAGAGGGACTCGCTTTTATGATAAATGTAGATATGCTTTTATGTAATATTTGTGTTTCTTCTTCCCATCAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGAAATAATCAAGAAACAGGAGAAACTCATTGAAGGATGGAAGAAGGATTTGAAAGACCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAATTAGAATAGGTTTGTGATCCCATGCTCTATTGTTTAGTTGTTTGTAGATCTTGTTAATTACGTACTTTCACTGTGAATGTAGGTGGGCTTATTGACTAGTCTTGCTTAACTACGTTCATTGTGCGGTTGTGCCTAGTTTTCTTCTTAAATGTTCGAAATAGTAATGAATTTTATTTAACAAAATTTGACTTAAAAATTGTTTATTGAACCTACGAACTCTTCATCTTGG

mRNA sequence

ATGGCTGAACGACAACCAATCGACCAACAACATTCGCTTGATCCACAATTGCAATCATCACAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCCGCAAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAAGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGAAATAATCAAGAAACAGGAGAAACTCATTGAAGGATGGAAGAAGGATTTGAAAGACCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAA

Coding sequence (CDS)

ATGGCTGAACGACAACCAATCGACCAACAACATTCGCTTGATCCACAATTGCAATCATCACAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCCGCAAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAAGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGAAATAATCAAGAAACAGGAGAAACTCATTGAAGGATGGAAGAAGGATTTGAAAGACCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAA

Homology

[Close]

BLAST of CSPI04G00530 vs. Swiss-Prot
Match: MED28_ARATH (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana GN=MED28 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.8e-38
Identity = 85/135 (62.96%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 15  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHAR 74
           P ++S ++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 75  DFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKVKNEIIKKQEKLIEGWKKD 134
           DFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+E+IKK  +L +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 135 LKDQLDKHNNELEKV 142
           +K+Q++KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

[Close]

BLAST of CSPI04G00530 vs. TrEMBL
Match: A0A0A0KT19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-69
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CSPI04G00530 vs. TrEMBL
Match: M5VMT0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013061mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.6e-55
Identity = 114/142 (80.28%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 1   MAERQPIDQQ-HSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ 60
           MAERQ  DQQ H +D Q+QS Q  REDM+A V+ALEAALLPCLPARELQAIDRSPHPSHQ
Sbjct: 1   MAERQAADQQQHQIDAQMQSPQPQREDMVACVIALEAALLPCLPARELQAIDRSPHPSHQ 60

Query: 61  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKL 120
           +DVERHARDFMEAAKKLQLYFIGLQREDQPTK + LRKEI A+EEEL++K E+IKK E+L
Sbjct: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKAQQLRKEIDAMEEELRIKTELIKKHERL 120

Query: 121 IEGWKKDLKDQLDKHNNELEKV 142
           I+GWKKDLKDQLDKHN ELE+V
Sbjct: 121 IQGWKKDLKDQLDKHNTELERV 142

[Close]

BLAST of CSPI04G00530 vs. TrEMBL
Match: W9QFH0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011099 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.1e-53
Identity = 111/140 (79.29%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ +DQQH  DP LQS+ +P+EDMIA +MALEA+LLPCLPA+ELQAIDRSPHPSHQ+
Sbjct: 1   MAERQGLDQQHQTDPPLQSAGAPKEDMIACLMALEASLLPCLPAKELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQRE+QP K ETLRKEI+A+EEELK K EII K EKLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREEQPNKAETLRKEIAAMEEELKHKTEIINKHEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEK 141
            GW+K+LKDQLDKH  ELE+
Sbjct: 121 LGWRKELKDQLDKHQTELER 140

[Close]

BLAST of CSPI04G00530 vs. TrEMBL
Match: A0A059BS09_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02473 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.0e-52
Identity = 109/141 (77.30%), Postives = 123/141 (87.23%), Query Frame = 1


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           M+ERQ +DQQH +DP LQS Q P+EDM+A V ALE ALLPCLPARELQAIDRS HPSHQ+
Sbjct: 1   MSERQALDQQHQVDPHLQSPQHPKEDMLACVTALEEALLPCLPARELQAIDRSQHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQ+YFI LQREDQPT+ E L KEI  +EEELK+K E+IKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQVYFISLQREDQPTEAEKLMKEIVMMEEELKIKTELIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+KDLKDQLDK N ELEKV
Sbjct: 121 QGWRKDLKDQLDKINCELEKV 141

[Close]

BLAST of CSPI04G00530 vs. TrEMBL
Match: A0A061DRS6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_004672 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.0e-52
Identity = 106/133 (79.70%), Postives = 122/133 (91.73%), Query Frame = 1


Query: 9   QQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARD 68
           Q+  LDPQ+QS+QS REDMI++V+ALE ALLPCLPARELQAIDRSPHPSHQ+DVERHARD
Sbjct: 6   QELQLDPQIQSAQSSREDMISWVVALETALLPCLPARELQAIDRSPHPSHQIDVERHARD 65

Query: 69  FMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLIEGWKKDLK 128
           FMEAAKKLQLYFIGLQRED+PT+ E LRKEI+ +EEELKVK+EII  QE+LI+GW+KDL 
Sbjct: 66  FMEAAKKLQLYFIGLQREDRPTRAEMLRKEIATMEEELKVKSEIINNQERLIQGWRKDLT 125

Query: 129 DQLDKHNNELEKV 142
           DQLDKHN ELE+V
Sbjct: 126 DQLDKHNTELERV 138

[Close]

BLAST of CSPI04G00530 vs. TAIR10
Match: AT3G52860.1 (AT3G52860.1 unknown protein)

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-39
Identity = 85/135 (62.96%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 15  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHAR 74
           P ++S ++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 75  DFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKVKNEIIKKQEKLIEGWKKD 134
           DFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+E+IKK  +L +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 135 LKDQLDKHNNELEKV 142
           +K+Q++KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

[Close]

BLAST of CSPI04G00530 vs. NCBI nr
Match: gi|449469116|ref|XP_004152267.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 2.3e-69
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CSPI04G00530 vs. NCBI nr
Match: gi|659108768|ref|XP_008454378.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 2.4e-66
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ +DQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKN+IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of CSPI04G00530 vs. NCBI nr
Match: gi|645261710|ref|XP_008236425.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Prunus mume])

HSP 1 Score: 222.6 bits (566), Expect = 4.3e-55
Identity = 115/142 (80.99%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 1   MAERQPIDQQ-HSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ 60
           MAERQ  DQQ H +D Q+QS Q  REDM+A V+ALEAALLPCLPARELQAIDRSPHPSHQ
Sbjct: 1   MAERQAADQQQHQIDAQMQSPQPQREDMVACVIALEAALLPCLPARELQAIDRSPHPSHQ 60

Query: 61  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKL 120
           +DVERHARDFMEAAKKLQLYFIGLQREDQPTK E LRKEI A+EEEL++K E+IKK E+L
Sbjct: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKAEQLRKEIDAMEEELRIKTELIKKHERL 120

Query: 121 IEGWKKDLKDQLDKHNNELEKV 142
           I+GWKKDLKDQLDKHN ELE+V
Sbjct: 121 IQGWKKDLKDQLDKHNTELERV 142

[Close]

BLAST of CSPI04G00530 vs. NCBI nr
Match: gi|658061269|ref|XP_008366497.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28-like [Malus domestica])

HSP 1 Score: 222.2 bits (565), Expect = 5.6e-55
Identity = 112/141 (79.43%), Postives = 125/141 (88.65%), Query Frame = 1


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ +DQQH  D Q+QS  +PREDM++ VMALE ALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQVVDQQHQSDAQMQSQMAPREDMVSCVMALEVALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQRED PTK E LRKEI A+EEEL++K EIIKK E+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDLPTKAEQLRKEIDAMEEELRIKTEIIKKHERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GWK +LKDQLDKHN ELE+V
Sbjct: 121 QGWKXELKDQLDKHNTELERV 141

[Close]

BLAST of CSPI04G00530 vs. NCBI nr
Match: gi|747065954|ref|XP_011079640.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Sesamum indicum])

HSP 1 Score: 221.9 bits (564), Expect = 7.3e-55
Identity = 116/141 (82.27%), Postives = 129/141 (91.49%), Query Frame = 1


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ  + QH+ DPQLQS  S +EDMI+YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQQHEPQHATDPQLQSPAS-KEDMISYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPT+ ETLRKEI+ +EEELKVK+E+I KQEKLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTRAETLRKEIAMMEEELKVKSELINKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+ +LKDQLDKHN ELEKV
Sbjct: 121 QGWRTELKDQLDKHNIELEKV 140

The following BLAST results are available for this feature:

BLAST of CSPI04G00530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED28_ARATH	2.8e-38	62.96	Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana G...	[more]

BLAST of CSPI04G00530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT19_CUCSA	1.6e-69	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G00990 PE=4 SV=1	[more]
M5VMT0_PRUPE	6.6e-55	80.28	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013061mg PE=4 SV=1	[more]
W9QFH0_9ROSA	2.1e-53	79.29	Uncharacterized protein OS=Morus notabilis GN=L484_011099 PE=4 SV=1	[more]
A0A059BS09_EUCGR	4.0e-52	77.30	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02473 PE=4 SV=1	[more]
A0A061DRS6_THECC	9.0e-52	79.70	Uncharacterized protein OS=Theobroma cacao GN=TCM_004672 PE=4 SV=1	[more]

BLAST of CSPI04G00530 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52860.1	1.6e-39	62.96	unknown protein	[more]

BLAST of CSPI04G00530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469116\|ref\|XP_004152267.1\|	2.3e-69	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativ...	[more]
gi\|659108768\|ref\|XP_008454378.1\|	2.4e-66	95.74	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]	[more]
gi\|645261710\|ref\|XP_008236425.1\|	4.3e-55	80.99	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Prunus mume]	[more]
gi\|658061269\|ref\|XP_008366497.1\|	5.6e-55	79.43	PREDICTED: mediator of RNA polymerase II transcription subunit 28-like [Malus do...	[more]
gi\|747065954\|ref\|XP_011079640.1\|	7.3e-55	82.27	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Sesamum indic...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G00530.1	CSPI04G00530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 92..141 scor
None	No IPR available	PANTHER	PTHR39117	FAMILY NOT NAMED	coord: 1..141 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G00530	Cla006410	Watermelon (97103) v1	cpiwmB291
CSPI04G00530	Csa4G00990	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G00530	MELO3C017987	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G00530	ClCG10G010560	Watermelon (Charleston Gray)	cpiwcgB280
CSPI04G00530	Lsi03G010350	Bottle gourd (USVL1VR-Ls)	cpilsiB274
CSPI04G00530	MELO3C017987.2	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G00530	CsaV3_4G000480	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G00530	Cla97C10G193490	Watermelon (97103) v2	cpiwmbB278
CSPI04G00530	Bhi11G000967	Wax gourd	cpiwgoB358
CSPI04G00530	Cucsa.097400	Cucumber (Gy14) v1	cgycpiB103
CSPI04G00530	CmaCh16G003300	Cucurbita maxima (Rimu)	cmacpiB338
CSPI04G00530	CmoCh16G003490	Cucurbita moschata (Rifu)	cmocpiB329
CSPI04G00530	CsGy4G000460	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G00530	Carg19678	Silver-seed gourd	carcpiB0328

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G00530	Wild cucumber (PI 183967)	cpicpiB151
CSPI04G00530	Wild cucumber (PI 183967)	cpicpiB169
CSPI04G00530	Cucumber (Gy14) v1	cgycpiB522
CSPI04G00530	Cucurbita maxima (Rimu)	cmacpiB715
CSPI04G00530	Cucurbita moschata (Rifu)	cmocpiB709
CSPI04G00530	Cucumber (Chinese Long) v2	cpicuB188
CSPI04G00530	Cucumber (Chinese Long) v2	cpicuB207
CSPI04G00530	Melon (DHL92) v3.5.1	cpimeB276
CSPI04G00530	Melon (DHL92) v3.5.1	cpimeB309
CSPI04G00530	Cucurbita pepo (Zucchini)	cpecpiB221
CSPI04G00530	Cucurbita pepo (Zucchini)	cpecpiB399
CSPI04G00530	Cucumber (Gy14) v2	cgybcpiB179
CSPI04G00530	Silver-seed gourd	carcpiB0407
CSPI04G00530	Cucumber (Chinese Long) v3	cpicucB224