CmaCh16G003300 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G003300
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Mediator of RNA polymerase II transcription subunit 28
Location	Cma_Chr16 : 1553053 .. 1554536 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAGGTCCAAGAAAAAAGAGGACCCGCCTGATCGCATCGGCGACTCAGAATCTACGGTTAGTGAAGAATTCTCGGTTACCGCCCAAAGGAACTCCGGAGCTGGAAGGCAAATTCACCCCTTCTGCGACCGACCGAGCTCGTCGTCCTTCACATCCTTCTTCTTATCGAGTATGCTCTCCTTCCTCTGCTGTGTTCATGTGCTTTTTTAGGGTTTATACTCCTAGGGCTGAAAAATAGTAGTTGCTGTATGTTTTGTTTAGTTTCTTTGTCGATGAATTGAAATGGAGATTTGATTGTGGTCACAAGATATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATACGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAAGTCAGTTACTGATCCCTCCCCTTAAATCTTTGTGCATTCCAGATTTAATGTTACACTAAGCTGGCAGATAAGAGCATAATGTGACCTCAAGTTTCCTGATAATTATAATAGCATCTTATAATGGATACCCTTTGCAAGTTCTCTGTTTGATCTGCAGAGACAAACAGCTATGTACAATCTGTAAAGCAACTTTCCTGAGTAAATCCTCATTAAATTTGGTTCATCATGTTCTGTTTCATATGCTGGAGGTCTGCTGCTGTATCTGGAGATTTTGGTGCATTAAAATTATGTGGACGTGTGGTTCTCTATGAATTTGTTTGATTGAAATATGTGAAGTGGAAGTGACAATTTAGATCTAGAAGTAGCATGATTGTCTGTAATCTACGACTCACAAATGGCTCGACATAGGACCGGGGGGATGCTCGGCGTTGAACTGATATTGTCTGTGGTTAGGTGTTTGTAAACAGTGAAGAAAATGACGCCCTGGTTTGTTTTTGCTTCAGTTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAACTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGTAAATAATCAATCAAGCACCTTATGATAATACTATTCTTTTTTGTAACATTTGTTTGTACTACTTTTCATCAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAGTAGAATAGGCTTGCGATCCCAATGCTCTATTGTTTAGTTTTTTGTAGGTCATGTCAATTGCATACGTTCACTACTAATTAATGGTGGGGTATTGTTTGCCATAGACGTTTTTATGTAGACACTTGAATGCATTCACCGAATAACATAAACCTAATTGTGCTTGTTTTCGTC

mRNA sequence

AAATAGGTCCAAGAAAAAAGAGGACCCGCCTGATCGCATCGGCGACTCAGAATCTACGGTTAGTGAAGAATTCTCGGTTACCGCCCAAAGGAACTCCGGAGCTGGAAGGCAAATTCACCCCTTCTGCGACCGACCGAGCTCGTCGTCCTTCACATCCTTCTTCTTATCGATTTCTTTGTCGATGAATTGAAATGGAGATTTGATTGTGGTCACAAGATATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATACGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAACTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAGTAGAATAGGCTTGCGATCCCAATGCTCTATTGTTTAGTTTTTTGTAGGTCATGTCAATTGCATACGTTCACTACTAATTAATGGTGGGGTATTGTTTGCCATAGACGTTTTTATGTAGACACTTGAATGCATTCACCGAATAACATAAACCTAATTGTGCTTGTTTTCGTC

Coding sequence (CDS)

ATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATACGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAACTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAG

Protein sequence

MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Homology

[Close]

BLAST of CmaCh16G003300 vs. Swiss-Prot
Match: MED28_ARATH (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana GN=MED28 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-38
Identity = 86/135 (63.70%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 15  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 74
           P ++S ++P        ED+++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 75  DFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKD 134
           DFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK KD++IKK  RL +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 135 LKDQLDKHNNELEKV 142
           +K+Q++KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

[Close]

BLAST of CmaCh16G003300 vs. TrEMBL
Match: A0A0A0KT19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-65
Identity = 130/141 (92.20%), Postives = 140/141 (99.29%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K++IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CmaCh16G003300 vs. TrEMBL
Match: M5VMT0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013061mg PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-54
Identity = 116/142 (81.69%), Postives = 128/142 (90.14%), Query Frame = 1


Query: 1   MAERQPLDQQ-NQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQ 60
           MAERQ  DQQ +QID Q+QS Q  REDMV+ V+ALEAALLPCLPARELQAIDRSPHPSHQ
Sbjct: 1   MAERQAADQQQHQIDAQMQSPQPQREDMVACVIALEAALLPCLPARELQAIDRSPHPSHQ 60

Query: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERL 120
           IDVERHARDFMEAAKKLQLYFIGLQREDQPTK + LRKEI A+EEEL++K ++IKK ERL
Sbjct: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKAQQLRKEIDAMEEELRIKTELIKKHERL 120

Query: 121 IEGWKKDLKDQLDKHNNELEKV 142
           I+GWKKDLKDQLDKHN ELE+V
Sbjct: 121 IQGWKKDLKDQLDKHNTELERV 142

[Close]

BLAST of CmaCh16G003300 vs. TrEMBL
Match: W9QFH0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011099 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.0e-52
Identity = 109/140 (77.86%), Postives = 126/140 (90.00%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+Q DP LQS+ +P+EDM++ +MALEA+LLPCLPA+ELQAIDRSPHPSHQI
Sbjct: 1   MAERQGLDQQHQTDPPLQSAGAPKEDMIACLMALEASLLPCLPAKELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQRE+QP K ETLRKEI+A+EEELK K +II K E+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREEQPNKAETLRKEIAAMEEELKHKTEIINKHEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEK 141
            GW+K+LKDQLDKH  ELE+
Sbjct: 121 LGWRKELKDQLDKHQTELER 140

[Close]

BLAST of CmaCh16G003300 vs. TrEMBL
Match: A0A061DRS6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_004672 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.8e-52
Identity = 106/133 (79.70%), Postives = 122/133 (91.73%), Query Frame = 1


Query: 9   QQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARD 68
           Q+ Q+DPQ+QS+QS REDM+S+V+ALE ALLPCLPARELQAIDRSPHPSHQIDVERHARD
Sbjct: 6   QELQLDPQIQSAQSSREDMISWVVALETALLPCLPARELQAIDRSPHPSHQIDVERHARD 65

Query: 69  FMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKDLK 128
           FMEAAKKLQLYFIGLQRED+PT+ E LRKEI+ +EEELK+K +II  QERLI+GW+KDL 
Sbjct: 66  FMEAAKKLQLYFIGLQREDRPTRAEMLRKEIATMEEELKVKSEIINNQERLIQGWRKDLT 125

Query: 129 DQLDKHNNELEKV 142
           DQLDKHN ELE+V
Sbjct: 126 DQLDKHNTELERV 138

[Close]

BLAST of CmaCh16G003300 vs. TrEMBL
Match: A0A059BS09_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02473 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-51
Identity = 110/141 (78.01%), Postives = 124/141 (87.94%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           M+ERQ LDQQ+Q+DP LQS Q P+EDM++ V ALE ALLPCLPARELQAIDRS HPSHQI
Sbjct: 1   MSERQALDQQHQVDPHLQSPQHPKEDMLACVTALEEALLPCLPARELQAIDRSQHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQ+YFI LQREDQPT+ E L KEI  +EEELK+K ++IKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQVYFISLQREDQPTEAEKLMKEIVMMEEELKIKTELIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+KDLKDQLDK N ELEKV
Sbjct: 121 QGWRKDLKDQLDKINCELEKV 141

[Close]

BLAST of CmaCh16G003300 vs. TAIR10
Match: AT3G52860.1 (AT3G52860.1 unknown protein)

HSP 1 Score: 160.6 bits (405), Expect = 7.0e-40
Identity = 86/135 (63.70%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 15  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 74
           P ++S ++P        ED+++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 75  DFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKD 134
           DFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK KD++IKK  RL +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 135 LKDQLDKHNNELEKV 142
           +K+Q++KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

[Close]

BLAST of CmaCh16G003300 vs. NCBI nr
Match: gi|449469116|ref|XP_004152267.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.5e-65
Identity = 130/141 (92.20%), Postives = 140/141 (99.29%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K++IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CmaCh16G003300 vs. NCBI nr
Match: gi|659108768|ref|XP_008454378.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo])

HSP 1 Score: 252.7 bits (644), Expect = 3.8e-64
Identity = 130/141 (92.20%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of CmaCh16G003300 vs. NCBI nr
Match: gi|657962880|ref|XP_008373041.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Malus domestica])

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 116/141 (82.27%), Postives = 127/141 (90.07%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ +DQQ Q D Q+QS  +PREDMVS VMALEAALLPCLPA+ELQAIDRSP PSHQI
Sbjct: 1   MAERQVVDQQQQSDAQMQSPTAPREDMVSCVMALEAALLPCLPAKELQAIDRSPLPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTK E LRKEI A+EEEL++K +IIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKAEQLRKEIDAMEEELRIKTEIIKKHERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GWKK+LKDQLDKHN ELE+V
Sbjct: 121 QGWKKELKDQLDKHNTELERV 141

[Close]

BLAST of CmaCh16G003300 vs. NCBI nr
Match: gi|658061269|ref|XP_008366497.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28-like [Malus domestica])

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 1


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ +DQQ+Q D Q+QS  +PREDMVS VMALE ALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQVVDQQHQSDAQMQSQMAPREDMVSCVMALEVALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQRED PTK E LRKEI A+EEEL++K +IIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDLPTKAEQLRKEIDAMEEELRIKTEIIKKHERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GWK +LKDQLDKHN ELE+V
Sbjct: 121 QGWKXELKDQLDKHNTELERV 141

[Close]

BLAST of CmaCh16G003300 vs. NCBI nr
Match: gi|645261710|ref|XP_008236425.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Prunus mume])

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-54
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 1


Query: 1   MAERQPLDQQ-NQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQ 60
           MAERQ  DQQ +QID Q+QS Q  REDMV+ V+ALEAALLPCLPARELQAIDRSPHPSHQ
Sbjct: 1   MAERQAADQQQHQIDAQMQSPQPQREDMVACVIALEAALLPCLPARELQAIDRSPHPSHQ 60

Query: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERL 120
           IDVERHARDFMEAAKKLQLYFIGLQREDQPTK E LRKEI A+EEEL++K ++IKK ERL
Sbjct: 61  IDVERHARDFMEAAKKLQLYFIGLQREDQPTKAEQLRKEIDAMEEELRIKTELIKKHERL 120

Query: 121 IEGWKKDLKDQLDKHNNELEKV 142
           I+GWKKDLKDQLDKHN ELE+V
Sbjct: 121 IQGWKKDLKDQLDKHNTELERV 142

The following BLAST results are available for this feature:

BLAST of CmaCh16G003300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED28_ARATH	1.2e-38	63.70	Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana G...	[more]

BLAST of CmaCh16G003300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT19_CUCSA	2.4e-65	92.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G00990 PE=4 SV=1	[more]
M5VMT0_PRUPE	2.5e-54	81.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013061mg PE=4 SV=1	[more]
W9QFH0_9ROSA	4.0e-52	77.86	Uncharacterized protein OS=Morus notabilis GN=L484_011099 PE=4 SV=1	[more]
A0A061DRS6_THECC	6.8e-52	79.70	Uncharacterized protein OS=Theobroma cacao GN=TCM_004672 PE=4 SV=1	[more]
A0A059BS09_EUCGR	1.5e-51	78.01	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02473 PE=4 SV=1	[more]

BLAST of CmaCh16G003300 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52860.1	7.0e-40	63.70	unknown protein	[more]

BLAST of CmaCh16G003300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469116\|ref\|XP_004152267.1\|	3.5e-65	92.20	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativ...	[more]
gi\|659108768\|ref\|XP_008454378.1\|	3.8e-64	92.20	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]	[more]
gi\|657962880\|ref\|XP_008373041.1\|	1.2e-54	82.27	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Malus domesti...	[more]
gi\|658061269\|ref\|XP_008366497.1\|	1.2e-54	81.56	PREDICTED: mediator of RNA polymerase II transcription subunit 28-like [Malus do...	[more]
gi\|645261710\|ref\|XP_008236425.1\|	1.6e-54	82.39	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G003300.1	CmaCh16G003300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 92..141 scor
None	No IPR available	PANTHER	PTHR39117	FAMILY NOT NAMED	coord: 1..141 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G003300	Cucsa.097400	Cucumber (Gy14) v1	cgycmaB0197
CmaCh16G003300	Cla006410	Watermelon (97103) v1	cmawmB293
CmaCh16G003300	Csa4G00990	Cucumber (Chinese Long) v2	cmacuB333
CmaCh16G003300	MELO3C017987	Melon (DHL92) v3.5.1	cmameB303
CmaCh16G003300	ClCG10G010560	Watermelon (Charleston Gray)	cmawcgB280
CmaCh16G003300	CSPI04G00530	Wild cucumber (PI 183967)	cmacpiB338
CmaCh16G003300	CmoCh16G003490	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G003300	Lsi03G010350	Bottle gourd (USVL1VR-Ls)	cmalsiB307
CmaCh16G003300	Cp4.1LG14g04480	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G003300	MELO3C017987.2	Melon (DHL92) v3.6.1	cmamedB354
CmaCh16G003300	CsaV3_4G000480	Cucumber (Chinese Long) v3	cmacucB0388
CmaCh16G003300	Cla97C10G193490	Watermelon (97103) v2	cmawmbB332
CmaCh16G003300	Bhi11G000967	Wax gourd	cmawgoB0410
CmaCh16G003300	CsGy4G000460	Cucumber (Gy14) v2	cgybcmaB494
CmaCh16G003300	Carg19678	Silver-seed gourd	carcmaB0406

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G003300	Cucumber (Chinese Long) v3	cmacucB0397
CmaCh16G003300	Cucumber (Chinese Long) v3	cmacucB0413
CmaCh16G003300	Cucumber (Chinese Long) v3	cmacucB0414
CmaCh16G003300	Watermelon (97103) v2	cmawmbB342
CmaCh16G003300	Watermelon (97103) v2	cmawmbB348
CmaCh16G003300	Wax gourd	cmawgoB0446
CmaCh16G003300	Wax gourd	cmawgoB0452
CmaCh16G003300	Cucurbita maxima (Rimu)	cmacmaB042
CmaCh16G003300	Cucurbita maxima (Rimu)	cmacmaB135
CmaCh16G003300	Cucurbita maxima (Rimu)	cmacmaB340
CmaCh16G003300	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G003300	Cucumber (Gy14) v1	cgycmaB0226
CmaCh16G003300	Cucumber (Gy14) v1	cgycmaB0623
CmaCh16G003300	Cucurbita moschata (Rifu)	cmacmoB318
CmaCh16G003300	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G003300	Wild cucumber (PI 183967)	cmacpiB351
CmaCh16G003300	Cucumber (Chinese Long) v2	cmacuB341
CmaCh16G003300	Cucumber (Chinese Long) v2	cmacuB347
CmaCh16G003300	Cucumber (Chinese Long) v2	cmacuB348
CmaCh16G003300	Melon (DHL92) v3.5.1	cmameB287
CmaCh16G003300	Melon (DHL92) v3.5.1	cmameB311
CmaCh16G003300	Watermelon (Charleston Gray)	cmawcgB293
CmaCh16G003300	Watermelon (97103) v1	cmawmB324
CmaCh16G003300	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G003300	Bottle gourd (USVL1VR-Ls)	cmalsiB310
CmaCh16G003300	Bottle gourd (USVL1VR-Ls)	cmalsiB309
CmaCh16G003300	Bottle gourd (USVL1VR-Ls)	cmalsiB304
CmaCh16G003300	Cucumber (Gy14) v2	cgybcmaB750
CmaCh16G003300	Melon (DHL92) v3.6.1	cmamedB331
CmaCh16G003300	Melon (DHL92) v3.6.1	cmamedB353
CmaCh16G003300	Melon (DHL92) v3.6.1	cmamedB363
CmaCh16G003300	Silver-seed gourd	carcmaB0526