CsaV3_4G000480 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G000480
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	mediator of RNA polymerase II transcription subunit 28
Location	chr4 : 270291 .. 274556 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAATTGGAGGAAAAAAGGAGCGGAGAAGTGAAGGAAGGCGTCGGTAGTAGACGCTCCGTCTCCTTCTCTTCCTTTCCTTTGCGTCCGCCGTCCGATCAACAGTTCCTCGAGAAGCAAACCGACGACCTCTTGCTCCACCTTTGACGGTGGAGCTACCTTGCGACCTGAACACTCAGTTCGAACAAGTTGCATATCATCGTTTCTTCTCCATTTCACACTACAAGTTCTGCATCACGTTTTTTCACGACTGGGTGTGTCTTGCAGCAACGTTTTTGGCTTGTGGGTAAGCTTTCGACTGTTACCTACATTTCGATTGGCTTCAAATCAGTTTATTGCTTTATTTTCCTTTTCGAAATGGAGTTGAGTGTTTAAATTGTTATTCTCAGCTCTTGAAACTCTTTTTTTTTTTTTTTTTTTTTGTGTGTGTGCGTTTAGGTAAATTTTTTGGGTATTAGATCAAGGTTCAGCAAGGTTGGACGTGTTTTGGAATAGTTAGGACTTGATTAGTGTGTCTTAGATCCGTCTTTGACTTGTGACAGTTTGTTGGTTGTAGTTTTGGGTTAATTCAGAGTGATTAATTAAGGGTAATGGTAGATTTTGGACAATACTATTTCGATTGAAAAACATATCGGGTTTCGATTAAGGTTGTTGAACTAATTTTTAACAATAAAGCATGATGTTTGATCATGGAAGTGGATTTTTGGATTGAGAATTATAGGGTTGTTGATGGAAGTGGTTTCCACACCCATTCCACAATGTAAATGTATGTCTTGACTGTTTTGATTTGATAAATGGTTGAAAATGTGTTTTGGGTGTTTGAAAATTTGTTTTGTACCATTTGAGTTTATTGAATCTGCTTATGATGTTGTAAATGTTTTCCTACTAGAAAATAAGTTTTATGTGATTTGAGAATCGACTAGTATTTTGTATTCTTTTAGTTGATTTTGTCGAACAAAAGTATATGACTATTTGGAACTAAGAAGCATTGATATGGATACGAGACACAAATATGACATGGTACAAACACAACGATATGTCAATTTTTAAAATCTAGGATACAACACAATTAGGGGAAGTCTTTATGCTCAGGTTAGAATTACTACTGCTCACTATTGGATGAAAATGGCAGTTTTCAAGCTTCCGGCTTTAAGTTTCAATTATTTTTATTTAATTTTATGTGCCATTATTGTGCCATAGGATGTACATGTTAATGATTCTTGACTCCTTTTCATGCCATTATGTTCATGTAGTTGCAATATATATATTATTTTGGTTCCGTTTGTTGCTCATATGTTGATGGGAATTTAAATAAGTACATCCCTCACGCCTATAGAATTGCTTTATGTTTTTCTATAAGTAAACTTGTCCAAGAATTGAAATGGAGTTTTGATTTTGTCAAAGGATATGGCTGAACGACAACCAATCGACCAACAACATTCGCTTGATCCACAATTGCAATCATCACAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGGTCAGTAACTGAACCCTCCCCTTTGATTCTCAAGTGTAATTAGATTCTGAAAGCACAGTGTAAAGTACTGTTTAGGTGGTTAGCTTTATGAATAACTGTATCTCTTCCCCACCACATTTTTCCATATTATAGGATCTCTTCAATGGAATAAGAAGTTTTTTTTTCCTTTTATTCTTTTTGTTCTTTAGGGTGCAATAGTGCTTCATAACAATTTGTCATGAATGTTAATCTAAAGTTTTGGTCACTAGGGGTCTTCATAATGCGAGCTCTTTGTTTTTGTTGTTATTTTATTTACTATTCACGATGGTTTAACAATTTCTTATTATTGACTAGAAAAAAAATGTGTTGCATAATGGTTGTTGAATTGAACCATTTTAAATTAAGATGAAGAGAAATTAGTAGATTTTGTTTTGTTTTGTTTATTTAGCAGAGAACTTGTAGGTGCAGAAAACAATAAATTGATGCAAAGAGTGACAGTTCATTGACCATAGTTTACTTTAAAGACAGGGGGTGGGTTGGGCTGAGGAAAATGCTGAACCAGTGTTTAGCTGTAGTTTGAAGATTTGTCAATCTTGAGGTTTCTGGGGCAGGTGGGGTAAGCGTGCACCTTCACTCCAAACTAGCATCTTAAATCCTCCACTTAGTTTGGCTTAATATTTGTAGGTATAAGATGCCAAATCTATGGGTCAAATGGCCCTCAAGTCTATTCTTGAGTTTCTTTCTTATTGAAGGAGAGCCAAAGGAGGCCTATACTACCTTTTGTCCCCAGAACTTTAACCATGTTGAAACTACCAGCCTACAGATCAATTCTAAAATAGTCAACTATTGTTGTCCTTTGCCTTGTATTGGAAACGATAATGCAACCACACAATTGGTTGCATACGATCGAGTCCTACCTTGCAGCATCAAGCACAGTTCCCAGACCCAATACAAAAACACATTCCCCGGTGATTGGATGTTTTAAGTTGTCTGCCTGTCTGGGTCGTTTCGGTTTCATCTGTTTGGAAAAACTTACGTACAACTACAATCCTGATCTTAGTGTTATACCAAGTGGGCAGATGAATACCTGATGATGCCTTCTCGCCTTCATCGTTTTGGTAGCATATGGCTTGTTTGTTTAAAAAAAGGGAAAAAGGCTTGCACCTATCAATGGATACAGGAAGTGATCTATTTGCTGGGCGGTCAGACAACAGTTAATTTGCTCTTTCGAAAAATTTCTTCATTTTCTGTCTAGCTCGACATTGTGTCTGAGTGTGGAGTAACTTGCTGGAGGGTAATTCTCATGTAATAAATATGTTTTAGTTTCCTGAACTAGTTCGTTTGCTCTTAAAATATTTTTATTCCAGATTTAGATTACACTAAGCTGGAAGAGATTATCTTAATGTGCCTTCCAGTTTCTTCATAATTCTAGTACTATCTTGTGGACTTTCTGTTTCCTTTGCAAGTTCACTGCTTGCTCTGCACAGACAGCTGTAATAAGCTAAGGAAGCTATCTCTTAGTATTGTTTCATTCAACTAGTTCATCTGCTCTCCTCCAGCATGACAATCTGTAAATCAACTTTCATGTCAATGGTTCTGCATGAAAATGATTTCATCATGTTCCATTTCATTAATGGAGGGATCTGCTGCTAAATTTTGATTAAATGCCTGACTGATCTCTCTAGTCATTGATTTTGTTGCATTAAAATTATGTGGATTGTAATTTCCACTCATTTGTTGTACTGAAATATGTGGAGTGGAAGTGACGAGCCGTTTGACCCACTAAGTGGAGTTAATATGTTGCAGTTAGTAAGTTTGTATTTGGGGCTTAGAGTTGTAAAATGGAGTTTTTTGATAAATTTGAAAGTGTTTGCTATTGAAGTTGAGTTGTTTACGCCTACCTAAAATGTTGATGAACCAAACAGCTAGCCATGCATGCCTTCAATTTGCTACTCACTTGTGACTCGATGTCGGATTGAGGGAAACTGGGGCATTGAACGATATGTCTGTGGTTAGGTGTTTCTAAAGAGTGAAGAAAAATGACACCATGTTTTATTATTTGCTTCAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAAGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGTAAACACTTCTTTTCCATTCAAAGAGGGACTCGCTTTTATGATAAATGTAGATATGCTTTTATGTAATATTTGTGTTTCTTCTTCCCATCAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGAAATAATCAAGAAACAGGAGAAACTCATTGAAGGATGGAAGAAGGATTTGAAAGACCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAATTAGAATAGGTTTGTGATCCCATGTTCTATTGTTTAGTTGTTTGTAGATCTTGTTAATTACGTACTTTCACTGTGAATGTAGGTGGGCTTATTGACTAGTCTTGCTTAACTACGTTCATTGTGCGGTTGTGCCTAGTTTTCTTCTTAAATGTTCGAAATAGTAATGAATTTTATTTAACAAAATTTGACTTAAAAATTGTTTATTGAACCTATGAACTCTTCATCTTGGGTCGTGAAAAGTATATAAACAATTTTTTCCTATAAATAATTAGAAAACCAATTCAAACAAGTCG

mRNA sequence

ATGGCTGAACGACAACCAATCGACCAACAACATTCGCTTGATCCACAATTGCAATCATCACAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAAGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGAAATAATCAAGAAACAGGAGAAACTCATTGAAGGATGGAAGAAGGATTTGAAAGACCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAA

Coding sequence (CDS)

ATGGCTGAACGACAACCAATCGACCAACAACATTCGCTTGATCCACAATTGCAATCATCACAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAAGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGAAATAATCAAGAAACAGGAGAAACTCATTGAAGGATGGAAGAAGGATTTGAAAGACCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAA

Protein sequence

MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLIEGWKKDLKDQLDKHNNELEKV

Homology

[Close]

BLAST of CsaV3_4G000480 vs. NCBI nr
Match: XP_004152267.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN52780.1 hypothetical protein Csa_4G00990 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 4.5e-69
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CsaV3_4G000480 vs. NCBI nr
Match: XP_008454378.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >XP_008454380.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 4.7e-66
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ +DQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKN+IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of CsaV3_4G000480 vs. NCBI nr
Match: XP_022922953.1 (mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022922954.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022984538.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_022984539.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_023552182.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >XP_023552183.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.9 bits (655), Expect = 4.0e-65
Identity = 130/141 (92.20%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K++IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CsaV3_4G000480 vs. NCBI nr
Match: XP_022149222.1 (mediator of RNA polymerase II transcription subunit 28 [Momordica charantia])

HSP 1 Score: 253.1 bits (645), Expect = 5.8e-64
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KN+IIKK E+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLAKHNNELEKV 141

[Close]

BLAST of CsaV3_4G000480 vs. NCBI nr
Match: PSS32476.1 (Mediator of RNA polymerase II transcription subunit like [Actinidia chinensis var. chinensis])

HSP 1 Score: 230.7 bits (587), Expect = 3.1e-57
Identity = 117/141 (82.98%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQP+DQQH LDP LQS   PREDMIA VMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQHPLDPHLQSPSPPREDMIACVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGL+REDQPTK ++LRKEI+ +EEELKVK+E+I KQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLEREDQPTKADSLRKEIALMEEELKVKSELINKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+KDLKDQLDKHN EL +V
Sbjct: 121 QGWRKDLKDQLDKHNIELGRV 141

[Close]

BLAST of CsaV3_4G000480 vs. TAIR10
Match: AT3G52860.1 (unknown protein)

HSP 1 Score: 121.7 bits (304), Expect = 3.6e-28
Identity = 60/78 (76.92%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 27  MIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQRE 86
           ++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RE
Sbjct: 41  IMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFMGLKRE 100

Query: 87  DQ-PTKVETLRKEISAIE 104
           D+ P++ E+L+K+I+ +E
Sbjct: 101 DRAPSRAESLKKDIAVME 118

[Close]

BLAST of CsaV3_4G000480 vs. Swiss-Prot
Match: sp|Q9LFA5|MED28_ARATH (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana OX=3702 GN=MED28 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.5e-27
Identity = 60/78 (76.92%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 27  MIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQRE 86
           ++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RE
Sbjct: 41  IMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFMGLKRE 100

Query: 87  DQ-PTKVETLRKEISAIE 104
           D+ P++ E+L+K+I+ +E
Sbjct: 101 DRAPSRAESLKKDIAVME 118

[Close]

BLAST of CsaV3_4G000480 vs. TrEMBL
Match: tr|A0A0A0KT19|A0A0A0KT19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.0e-69
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CsaV3_4G000480 vs. TrEMBL
Match: tr|A0A1S3BZ89|A0A1S3BZ89_CUCME (mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 GN=LOC103494796 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.1e-66
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ +DQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKN+IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of CsaV3_4G000480 vs. TrEMBL
Match: tr|A0A2R6RR30|A0A2R6RR30_ACTCH (Mediator of RNA polymerase II transcription subunit like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc02775 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-57
Identity = 117/141 (82.98%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQP+DQQH LDP LQS   PREDMIA VMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQHPLDPHLQSPSPPREDMIACVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGL+REDQPTK ++LRKEI+ +EEELKVK+E+I KQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLEREDQPTKADSLRKEIALMEEELKVKSELINKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+KDLKDQLDKHN EL +V
Sbjct: 121 QGWRKDLKDQLDKHNIELGRV 141

[Close]

BLAST of CsaV3_4G000480 vs. TrEMBL
Match: tr|A0A2N9EGY0|A0A2N9EGY0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1813 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 3.5e-57
Identity = 117/141 (82.98%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           M ERQ +DQQ  +DP LQSS  PR+DMIA VMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MGERQVLDQQLQIDPLLQSSPPPRDDMIACVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEI+ +EEELK+KNEIIKKQE++I
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIAVMEEELKIKNEIIKKQERMI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           +GW+K+ KDQLDKHN ELE+V
Sbjct: 121 QGWRKESKDQLDKHNTELERV 141

[Close]

BLAST of CsaV3_4G000480 vs. TrEMBL
Match: tr|A0A2R6RWM1|A0A2R6RWM1_ACTCH (Mediator of RNA polymerase II transcription subunit like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01504 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 7.7e-57
Identity = 118/141 (83.69%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQP+DQQH LDP LQS   PREDMIA VMALEAALLPCLPARELQAIDRS HPSHQ+
Sbjct: 1   MAERQPLDQQHPLDPLLQSPSPPREDMIACVMALEAALLPCLPARELQAIDRSSHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120
           DVERHARDFMEAAKKLQLYFIGL+REDQPTK E+LRKEI+ +EEELKVK+E+I KQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLEREDQPTKAESLRKEIALMEEELKVKSELINKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
            GW+KDLKDQLDKHN ELE+V
Sbjct: 121 LGWRKDLKDQLDKHNIELERV 141

The following BLAST results are available for this feature:

BLAST of CsaV3_4G000480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152267.1	4.5e-69	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis sativ...	[more]
XP_008454378.1	4.7e-66	95.74	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]...	[more]
XP_022922953.1	4.0e-65	92.20	mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_...	[more]
XP_022149222.1	5.8e-64	92.20	mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]	[more]
PSS32476.1	3.1e-57	82.98	Mediator of RNA polymerase II transcription subunit like [Actinidia chinensis va...	[more]

BLAST of CsaV3_4G000480 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52860.1	3.6e-28	76.92	unknown protein	[more]

BLAST of CsaV3_4G000480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LFA5\|MED28_ARATH	6.5e-27	76.92	Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_4G000480 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KT19\|A0A0A0KT19_CUCSA	3.0e-69	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1	[more]
tr\|A0A1S3BZ89\|A0A1S3BZ89_CUCME	3.1e-66	95.74	mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A2R6RR30\|A0A2R6RR30_ACTCH	2.0e-57	82.98	Mediator of RNA polymerase II transcription subunit like OS=Actinidia chinensis ...	[more]
tr\|A0A2N9EGY0\|A0A2N9EGY0_FAGSY	3.5e-57	82.98	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1813 PE=4 SV=1	[more]
tr\|A0A2R6RWM1\|A0A2R6RWM1_ACTCH	7.7e-57	83.69	Mediator of RNA polymerase II transcription subunit like OS=Actinidia chinensis ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **INTERPRO**
Term	Definition
IPR034456	MED28

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G000480.1	CsaV3_4G000480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
IPR034456	Mediator of RNA polymerase II transcription subunit 28	PANTHER	PTHR39117	FAMILY NOT NAMED	coord: 1..141

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G000480	CSPI04G00530	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G000480	Cucsa.097400	Cucumber (Gy14) v1	cgycucB102
CsaV3_4G000480	CmaCh16G003300	Cucurbita maxima (Rimu)	cmacucB0388
CsaV3_4G000480	CmoCh16G003490	Cucurbita moschata (Rifu)	cmocucB0385
CsaV3_4G000480	CsGy4G000460	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G000480	Carg19678	Silver-seed gourd	carcucB0328
CsaV3_4G000480	Cla006410	Watermelon (97103) v1	cucwmB300
CsaV3_4G000480	MELO3C017987	Melon (DHL92) v3.5.1	cucmeB315
CsaV3_4G000480	ClCG10G010560	Watermelon (Charleston Gray)	cucwcgB279
CsaV3_4G000480	Lsi03G010350	Bottle gourd (USVL1VR-Ls)	cuclsiB296
CsaV3_4G000480	MELO3C017987.2	Melon (DHL92) v3.6.1	cucmedB307
CsaV3_4G000480	Cla97C10G193490	Watermelon (97103) v2	cucwmbB273
CsaV3_4G000480	Bhi11G000967	Wax gourd	cucwgoB360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G000480	Cucumber (Chinese Long) v3	cuccucB165
CsaV3_4G000480	Silver-seed gourd	carcucB0406
CsaV3_4G000480	Cucumber (Gy14) v2	cgybcucB178
CsaV3_4G000480	Cucumber (Gy14) v2	cgybcucB338
CsaV3_4G000480	Cucumber (Gy14) v1	cgycucB339
CsaV3_4G000480	Cucumber (Gy14) v1	cgycucB537
CsaV3_4G000480	Cucurbita maxima (Rimu)	cmacucB0843
CsaV3_4G000480	Cucurbita moschata (Rifu)	cmocucB0829
CsaV3_4G000480	Cucurbita pepo (Zucchini)	cpecucB0263
CsaV3_4G000480	Cucurbita pepo (Zucchini)	cpecucB0499
CsaV3_4G000480	Wild cucumber (PI 183967)	cpicucB227
CsaV3_4G000480	Wild cucumber (PI 183967)	cpicucB404
CsaV3_4G000480	Melon (DHL92) v3.5.1	cucmeB282
CsaV3_4G000480	Melon (DHL92) v3.5.1	cucmeB314
CsaV3_4G000480	Melon (DHL92) v3.5.1	cucmeB345
CsaV3_4G000480	Melon (DHL92) v3.6.1	cucmedB275
CsaV3_4G000480	Melon (DHL92) v3.6.1	cucmedB306
CsaV3_4G000480	Watermelon (Charleston Gray)	cucwcgB308