MELO3C016838.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016838.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Glutamine synthetase
Location	chr07 : 1738905 .. 1739306 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCGAACCGCTTCTGTGACGACAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATGACGATGAACTTTTTTGGTAATCTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAA

mRNA sequence

ATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCGAACCGCTTCTGTGACGACAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATGACGATGAACTTTTTTGGTAATCTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAA

Coding sequence (CDS)

ATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCGAACCGCTTCTGTGACGACAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATGACGATGAACTTTTTTGGTAATCTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAA

Protein sequence

MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV

Homology

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BLAST of MELO3C016838.2 vs. NCBI nr
Match: KGN55294.1 (hypothetical protein Csa_4G644710 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 4.2e-40
Identity = 89/133 (66.92%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ F                          
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGF---CDGDDPLKKQLQPPPCTPARKGN 60

Query: 61  XXXXXXXXXEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120
                    EDPFLAAY+ECTSEDDEK CKLKKNK GFGGWMT NFF NLSCKQLTAVRD
Sbjct: 61  KKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKRTV 134
           DSLISSP SKRTV
Sbjct: 121 DSLISSPDSKRTV 130

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BLAST of MELO3C016838.2 vs. NCBI nr
Match: OMO70852.1 (hypothetical protein COLO4_28461 [Corchorus olitorius])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 59/136 (43.38%), Postives = 69/136 (50.74%), Query Frame = 0


Query: 6   KTHSRGRVAFSWENRPGVCKAA-----------------VAPPNRFXXXXXXXXXXXXXX 65
           K HS+G V FSWEN+PGVCK                     PP               XX
Sbjct: 5   KVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQDNKXX 64

Query: 66  XXXXXXXXXXXXXXXXXXXXXEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFG 125
           XXXXXXXXXXXXXXX      +DPFLAAY+ECT   ++   KL KN  G G         
Sbjct: 65  XXXXXXXXXXXXXXXRGLKKSDDPFLAAYKECTKSTNKG--KLAKNVNGGGSGNLKKGVF 124

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BLAST of MELO3C016838.2 vs. NCBI nr
Match: AES90757.1 (hypothetical protein MTR_4g097480 [Medicago truncatula])

HSP 1 Score: 59.7 bits (143), Expect = 8.7e-06
Identity = 41/143 (28.67%), Postives = 60/143 (41.96%), Query Frame = 0


Query: 4   NNKTHSRGRVAFSWENRPGVCK---------------AAVAPPNRF-----XXXXXXXXX 63
           + K+HS G + FSWE++PG+CK               ++   P+ F              
Sbjct: 3   HRKSHSYGSIPFSWEDKPGICKTPNNECPLNSINKKSSSKLSPSHFDNISKKNILEFQDK 62

Query: 64  XXXXXXXXXXXXXXXXXXXXXXXXXXEDPFLAAYRECTSEDDEKNCKLK-KNKYGFG-GW 123
                                     EDPFL AY+ECT  D  KNCK++ KNK G G  +
Sbjct: 63  KISIPLPPCQTQPPQRSTSGKGFKLQEDPFLVAYKECTKSD--KNCKMQSKNKKGVGFNF 122

Query: 124 MTMNFFGNLSCKQLTAVRDDSLI 125
           +++  +   SC+    V+DDS I
Sbjct: 123 VSLRSYSIFSCRSAIDVKDDSYI 143

[Close]

BLAST of MELO3C016838.2 vs. NCBI nr
Match: ONI33362.1 (hypothetical protein PRUPE_1G419300 [Prunus persica])

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 42/130 (32.31%), Postives = 53/130 (40.77%), Query Frame = 0


Query: 8   HSRGRVAFSWENRPGVCKAAVAPPNRF-----------XXXXXXXXXXXXXXXXXXXXXX 67
           HS G+V FSWEN PGV K A  PP+ +                                 
Sbjct: 6   HSLGKVPFSWENMPGVSK-ATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQP 65

Query: 68  XXXXXXXXXXXXXEDPFLAAYRECTS--EDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQ 125
                        EDPFL A++ECT   E   K+     NKY F   +   F   LSCK+
Sbjct: 66  LSRSSSTKALRKHEDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSWFGFGLSCKR 125

[Close]

BLAST of MELO3C016838.2 vs. NCBI nr
Match: PQP93470.1 (pre-mRNA-processing protein 40A isoform X1 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 45/140 (32.14%), Postives = 59/140 (42.14%), Query Frame = 0


Query: 8   HSRGRVAFSWENRPGVCKAAVAPPNRF-----------XXXXXXXXXXXXXXXXXXXXXX 67
           +S G+V FSWEN+PGV K A  PP+ +                                 
Sbjct: 9   YSLGKVPFSWENKPGVSK-ATQPPHPYRELPPPPCPCGEAPPKLSLQDFHLPLPPCTFQP 68

Query: 68  XXXXXXXXXXXXXEDPFLAAYRECTS--EDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQ 127
                        EDPFL A++ECT   E   K+     NKY F   +   F   LSCKQ
Sbjct: 69  LSRSSSTKAFRKHEDPFLVAFQECTKPPEGKAKDKTTSSNKYRFRSELGSWFGFGLSCKQ 128

Query: 128 LTAVRDDSL---ISSPVSKR 132
            ++VRDDSL   ISS + ++
Sbjct: 129 SSSVRDDSLSARISSSIVRQ 147

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BLAST of MELO3C016838.2 vs. TrEMBL
Match: tr|A0A0A0L2M9|A0A0A0L2M9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.7e-40
Identity = 89/133 (66.92%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ F                          
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGF---CDGDDPLKKQLQPPPCTPARKGN 60

Query: 61  XXXXXXXXXEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120
                    EDPFLAAY+ECTSEDDEK CKLKKNK GFGGWMT NFF NLSCKQLTAVRD
Sbjct: 61  KKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKRTV 134
           DSLISSP SKRTV
Sbjct: 121 DSLISSPDSKRTV 130

[Close]

BLAST of MELO3C016838.2 vs. TrEMBL
Match: tr|A0A1R3HKK6|A0A1R3HKK6_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.9e-07
Identity = 59/136 (43.38%), Postives = 69/136 (50.74%), Query Frame = 0


Query: 6   KTHSRGRVAFSWENRPGVCKAA-----------------VAPPNRFXXXXXXXXXXXXXX 65
           K HS+G V FSWEN+PGVCK                     PP               XX
Sbjct: 5   KVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQDNKXX 64

Query: 66  XXXXXXXXXXXXXXXXXXXXXEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFG 125
           XXXXXXXXXXXXXXX      +DPFLAAY+ECT   ++   KL KN  G G         
Sbjct: 65  XXXXXXXXXXXXXXXRGLKKSDDPFLAAYKECTKSTNKG--KLAKNVNGGGSGNLKKGVF 124

[Close]

BLAST of MELO3C016838.2 vs. TrEMBL
Match: tr|G7JF88|G7JF88_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11407276 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.8e-06
Identity = 41/143 (28.67%), Postives = 60/143 (41.96%), Query Frame = 0


Query: 4   NNKTHSRGRVAFSWENRPGVCK---------------AAVAPPNRF-----XXXXXXXXX 63
           + K+HS G + FSWE++PG+CK               ++   P+ F              
Sbjct: 3   HRKSHSYGSIPFSWEDKPGICKTPNNECPLNSINKKSSSKLSPSHFDNISKKNILEFQDK 62

Query: 64  XXXXXXXXXXXXXXXXXXXXXXXXXXEDPFLAAYRECTSEDDEKNCKLK-KNKYGFG-GW 123
                                     EDPFL AY+ECT  D  KNCK++ KNK G G  +
Sbjct: 63  KISIPLPPCQTQPPQRSTSGKGFKLQEDPFLVAYKECTKSD--KNCKMQSKNKKGVGFNF 122

Query: 124 MTMNFFGNLSCKQLTAVRDDSLI 125
           +++  +   SC+    V+DDS I
Sbjct: 123 VSLRSYSIFSCRSAIDVKDDSYI 143

[Close]

BLAST of MELO3C016838.2 vs. TrEMBL
Match: tr|M5XJQ6|M5XJQ6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021117mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 42/130 (32.31%), Postives = 53/130 (40.77%), Query Frame = 0


Query: 8   HSRGRVAFSWENRPGVCKAAVAPPNRF-----------XXXXXXXXXXXXXXXXXXXXXX 67
           HS G+V FSWEN PGV K A  PP+ +                                 
Sbjct: 6   HSLGKVPFSWENMPGVSK-ATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQP 65

Query: 68  XXXXXXXXXXXXXEDPFLAAYRECTS--EDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQ 125
                        EDPFL A++ECT   E   K+     NKY F   +   F   LSCK+
Sbjct: 66  LSRSSSTKALRKHEDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSWFGFGLSCKR 125

[Close]

BLAST of MELO3C016838.2 vs. TrEMBL
Match: tr|A0A251RBI7|A0A251RBI7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G419300 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 42/130 (32.31%), Postives = 53/130 (40.77%), Query Frame = 0


Query: 8   HSRGRVAFSWENRPGVCKAAVAPPNRF-----------XXXXXXXXXXXXXXXXXXXXXX 67
           HS G+V FSWEN PGV K A  PP+ +                                 
Sbjct: 6   HSLGKVPFSWENMPGVSK-ATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQP 65

Query: 68  XXXXXXXXXXXXXEDPFLAAYRECTS--EDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQ 125
                        EDPFL A++ECT   E   K+     NKY F   +   F   LSCK+
Sbjct: 66  LSRSSSTKALRKHEDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSWFGFGLSCKR 125

The following BLAST results are available for this feature:

BLAST of MELO3C016838.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55294.1	4.2e-40	66.92	hypothetical protein Csa_4G644710 [Cucumis sativus]	[more]
OMO70852.1	1.3e-06	43.38	hypothetical protein COLO4_28461 [Corchorus olitorius]	[more]
AES90757.1	8.7e-06	28.67	hypothetical protein MTR_4g097480 [Medicago truncatula]	[more]
ONI33362.1	3.3e-05	32.31	hypothetical protein PRUPE_1G419300 [Prunus persica]	[more]
PQP93470.1	3.3e-05	32.14	pre-mRNA-processing protein 40A isoform X1 [Prunus yedoensis var. nudiflora]	[more]

BLAST of MELO3C016838.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C016838.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C016838.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2M9\|A0A0A0L2M9_CUCSA	2.7e-40	66.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1	[more]
tr\|A0A1R3HKK6\|A0A1R3HKK6_9ROSI	8.9e-07	43.38	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1	[more]
tr\|G7JF88\|G7JF88_MEDTR	5.8e-06	28.67	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11407276 PE=4 SV=1	[more]
tr\|M5XJQ6\|M5XJQ6_PRUPE	2.2e-05	32.31	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021117mg PE=4 SV=1	[more]
tr\|A0A251RBI7\|A0A251RBI7_PRUPE	2.2e-05	32.31	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G419300 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044424	intracellular part
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016838.2.1	MELO3C016838.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..66
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 69..125
None	No IPR available	PANTHER	PTHR33696	FAMILY NOT NAMED	coord: 69..125 coord: 4..57
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 4..57

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016838.2	Csa4G644710	Cucumber (Chinese Long) v2	cumedB298
MELO3C016838.2	CSPI04G24980	Wild cucumber (PI 183967)	cpimedB302
MELO3C016838.2	CmaCh09G003070	Cucurbita maxima (Rimu)	cmamedB039
MELO3C016838.2	CmoCh09G003090	Cucurbita moschata (Rifu)	cmomedB029
MELO3C016838.2	Lsi04G014590	Bottle gourd (USVL1VR-Ls)	lsimedB330
MELO3C016838.2	Cp4.1LG06g02130	Cucurbita pepo (Zucchini)	cpemedB867
MELO3C016838.2	CsGy4G023300	Cucumber (Gy14) v2	cgybmedB267
MELO3C016838.2	Cla009961	Watermelon (97103) v1	medwmB508
MELO3C016838.2	ClCG05G026550	Watermelon (Charleston Gray)	medwcgB469
MELO3C016838.2	Cla97C05G108800	Watermelon (97103) v2	medwmbB473
MELO3C016838.2	Bhi09G002627	Wax gourd	medwgoB601
MELO3C016838.2	Carg21761	Silver-seed gourd	carmedB0334
MELO3C016838.2	CsaV3_4G035270	Cucumber (Chinese Long) v3	cucmedB308

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016838.2	Cucumber (Gy14) v2	cgybmedB127
MELO3C016838.2	Cucumber (Gy14) v2	cgybmedB439
MELO3C016838.2	Cucumber (Gy14) v1	cgymedB130
MELO3C016838.2	Cucumber (Gy14) v1	cgymedB571
MELO3C016838.2	Cucumber (Gy14) v1	cgymedB642
MELO3C016838.2	Cucurbita maxima (Rimu)	cmamedB198
MELO3C016838.2	Cucurbita maxima (Rimu)	cmamedB499
MELO3C016838.2	Cucurbita maxima (Rimu)	cmamedB691
MELO3C016838.2	Cucurbita maxima (Rimu)	cmamedB836
MELO3C016838.2	Cucurbita maxima (Rimu)	cmamedB896
MELO3C016838.2	Cucurbita moschata (Rifu)	cmomedB188
MELO3C016838.2	Cucurbita moschata (Rifu)	cmomedB486
MELO3C016838.2	Cucurbita moschata (Rifu)	cmomedB683
MELO3C016838.2	Cucurbita moschata (Rifu)	cmomedB826
MELO3C016838.2	Cucurbita moschata (Rifu)	cmomedB885
MELO3C016838.2	Cucurbita pepo (Zucchini)	cpemedB132
MELO3C016838.2	Cucurbita pepo (Zucchini)	cpemedB529
MELO3C016838.2	Cucurbita pepo (Zucchini)	cpemedB638
MELO3C016838.2	Cucurbita pepo (Zucchini)	cpemedB920
MELO3C016838.2	Wild cucumber (PI 183967)	cpimedB142
MELO3C016838.2	Wild cucumber (PI 183967)	cpimedB492
MELO3C016838.2	Cucumber (Chinese Long) v2	cumedB141
MELO3C016838.2	Cucumber (Chinese Long) v2	cumedB482
MELO3C016838.2	Melon (DHL92) v3.6.1	medmedB124
MELO3C016838.2	Melon (DHL92) v3.6.1	medmedB153
MELO3C016838.2	Bottle gourd (USVL1VR-Ls)	lsimedB153
MELO3C016838.2	Bottle gourd (USVL1VR-Ls)	lsimedB507
MELO3C016838.2	Watermelon (Charleston Gray)	medwcgB463
MELO3C016838.2	Watermelon (Charleston Gray)	medwcgB496
MELO3C016838.2	Watermelon (97103) v1	medwmB487
MELO3C016838.2	Watermelon (97103) v1	medwmB520
MELO3C016838.2	Silver-seed gourd	carmedB0002
MELO3C016838.2	Silver-seed gourd	carmedB0191
MELO3C016838.2	Silver-seed gourd	carmedB0415
MELO3C016838.2	Silver-seed gourd	carmedB0465
MELO3C016838.2	Silver-seed gourd	carmedB0781
MELO3C016838.2	Cucumber (Chinese Long) v3	cucmedB143
MELO3C016838.2	Cucumber (Chinese Long) v3	cucmedB504
MELO3C016838.2	Watermelon (97103) v2	medwmbB452
MELO3C016838.2	Watermelon (97103) v2	medwmbB499
MELO3C016838.2	Wax gourd	medwgoB594
MELO3C016838.2	Wax gourd	medwgoB596