Carg21761 (gene) Silver-seed gourd

NameCarg21761
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_198 : 159524 .. 161433 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTGCAGCAACAGAGCCCATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGACGACGATCTGGGGCAAAAGAAGCTGCGACCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGTTCAGAGAGTGCAGCAATGGAGAGGACGAGAAGAATTGCAAGTTGAAGCAGAATAAAACTGGGTTTGGAGGGTGGATGAACTTGTTGGGTAATTTGTCTTGTAAGCACTTGACGGCGGTTCGAGATGACAGTTTGATTAGCTCCCCTGTTTCCAAACGAACCGTGTAGACGAAAGAAGCATGGCGTAGCTTGTAATATTTATAGAATTAGACCTTTGTAAAATTCAATAAGGATTACAACTTTGGTTGTATGGACATGATTTTCAATATATTTTAATATTCAAATGTGAAATTCATTTTTACTTTTTGTTTGATAATTTTGTATTTTTTAAAATTGTGTTTGGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAATTAAACACTTAAATTTCTAGTTTATTTATTTATTTTTTTCAAGATTCAACTTAAAAATCAATTTATGGAAATAGATATATAGGAGTGTTTATAGTTTTCTACTATTAAAATATGCGTTTGTTTAATTTCTATATTTATTGACATTACATTTAAATTTGTAAATTTGTAGTCAAATTAAAAAAAAAATAAAAACAAAAATTTATTATTCAACTTTAAAAACGAATTCGCGGTGAAAGTCAAAGACAGCCTACAGAAGGCCTGACCGGCGAACGGTGGTTCCGACAAATAGCGACCATTATATATAGATCGGCGAGGGCGAATTTTAGTAAAGTCCATTACGAAAGGGGTTAATTCTGGAACGCGGTAAATAATTTTTTAGCCGCCGATAACTCCCCCCTCTCAACTTCTCCGTACTCTCAATCAGTTCCATCTCTGCCACTTCCTCGCTTAAACCCTAAAAACTCGATTTTACCCACAGCTTCGTGATCCGACCACTCCGGTTTCTTACCCGCTACCATACTGGGTTTGGCGCCACCAATTTTCCCACCGCAACTTCAAACAACAGCCGTAACTGTGAGTAATCTCCCTCTCTCTTTATCTCTAGGCGCTTTGGGTTATTGGATTCTGCATCTTCCATCTAGTTTCATAGAAAATTTCCGGCAACGGGAAGGGATTTGAAAAACCATGTTTAACGAGGAGATGGGTTCGTCACAAATATTGATATTTGGTTATATGCTTTAAGAACACCGCGGTTTACCTCAAGGAAGTGACGTCTAGTGGTAGAAAATGATTCGGGTTTGCAGAAGCATCGGGGAGCTAATTGTATTCTTCATCACTCCTTCGATAGGAATCGATGTCTCTTGTGAATCGGTCTATCATTTTTCCGCTGTGTCATTCTCCGTCATGCCAATTTACTGTTGTAACATTGTGATTTCTTGGAGATTTTTAATCTTAAGAGTGAAGTGTGCGGTGATATTCTCACTCACGCTGCATGCGATTGGTTTGGTTCTTCTATCCCCGCTACGCATTTGGAGGTTGAGAATGTATTGGAAACAAGAAAGATGATGGGACAAGATGTTCCGTTGTTTATTCACTTCTTTGTGATCTAACTGTTGTTCATTTTCATGCCTAACCATACGGGTTTTTTCGTCATAAATAACGTTTTGAGACGTTCAGTTTACGAAATTCTGACGTATTTTCTAGTTCTCTTCCTGCTTTCTTTAATATTTCTATGTTGTTTGCAGTTGGGTCTCTATTTCTTGCTTTTGGTGGGCTTCAACTGGAAGTTGGCTTAGCTGATCTGTTGGTATTGTGA

mRNA sequence

ATGACCTGCAGCAACAGAGCCCATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGACGACGATCTGGGGCAAAAGAAGCTGCGACCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGTTCAGAGAGTGCAGCAATGGAGAGGACGAGAAGAATTGCAAGTTGAAGCAGAATAAAACTGGCTTCGTGATCCGACCACTCCGGTTTCTTACCCGCTACCATACTGGGTTTGGCGCCACCAATTTTCCCACCGCAACTTCAAACAACAGCCGTAACTTTGGGTCTCTATTTCTTGCTTTTGGTGGGCTTCAACTGGAAGTTGGCTTAGCTGATCTGTTGGTATTGTGA

Coding sequence (CDS)

ATGACCTGCAGCAACAGAGCCCATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGACGACGATCTGGGGCAAAAGAAGCTGCGACCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGTTCAGAGAGTGCAGCAATGGAGAGGACGAGAAGAATTGCAAGTTGAAGCAGAATAAAACTGGCTTCGTGATCCGACCACTCCGGTTTCTTACCCGCTACCATACTGGGTTTGGCGCCACCAATTTTCCCACCGCAACTTCAAACAACAGCCGTAACTTTGGGTCTCTATTTCTTGCTTTTGGTGGGCTTCAACTGGAAGTTGGCTTAGCTGATCTGTTGGTATTGTGA

Protein sequence

MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGFVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLLVL
BLAST of Carg21761 vs. NCBI nr
Match: KGN55294.1 (hypothetical protein Csa_4G644710 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 3.0e-31
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 0

Query: 1  MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60
          M C+N+ HSRGRVAFSWENKPG CKAAVAPP      DD  +K+L+PPPCT ARKG KK+
Sbjct: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61 QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 96
          QKDG  EDPFLAA++EC++ +DEK CKLK+NK+GF
Sbjct: 61 QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGF 95

BLAST of Carg21761 vs. NCBI nr
Match: KDO43921.1 (hypothetical protein CISIN_1g044566mg, partial [Citrus sinensis])

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 42/114 (36.84%), Postives = 57/114 (50.00%), Query Frame = 0

Query: 1   MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPC---------- 60
           M+ SN+ HS+G V FSWENKPG  K  +   F     D     KL PPPC          
Sbjct: 1   MSLSNKFHSKGNVPFSWENKPGVSKVIIHNGF---DGDGHCSSKLPPPPCQAESKKFSVT 60

Query: 61  ---TSARKGQKKVQKDGVFE-DPFLAAFRECSNGEDEKNCKL----KQNKTGFV 97
              +S+RKG      +   + DPFL A +EC+  ++ +NC +    K NKTG +
Sbjct: 61  CPESSSRKGLGLWNNNKHDQPDPFLVALKECT--KNARNCSMKSSNKNNKTGMM 109

BLAST of Carg21761 vs. NCBI nr
Match: ESR41328.1 (hypothetical protein CICLE_v10027255mg [Citrus clementina])

HSP 1 Score: 60.8 bits (146), Expect = 4.4e-06
Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 0

Query: 1   MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPC---------- 60
           M+ SN+ HS+G V FSWENKPG  K  +   F     D     KL PPPC          
Sbjct: 1   MSLSNKFHSKGNVPFSWENKPGVSKVIIHNGF---DGDGHCSSKLPPPPCQEESKKFSVT 60

Query: 61  ---TSARKGQKKVQKDGVFE-DPFLAAFRECSNGEDEKNCKL----KQNKTGFVIRPLRF 109
              +S+RKG      +   + DPFL A +EC+  ++ +NC +    K NK G +    RF
Sbjct: 61  CPESSSRKGLGLWNNNKHDQPDPFLVALKECT--KNPRNCSMKSSNKNNKPGMMKGFFRF 120

BLAST of Carg21761 vs. NCBI nr
Match: KOM32442.1 (hypothetical protein LR48_Vigan01g199800 [Vigna angularis] >BAT75708.1 hypothetical protein VIGAN_01361800 [Vigna angularis var. angularis])

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 0

Query: 6   RAHSRGRVAFSWENKPGECKA----------AVAPPF-YRLGDD----------DLGQKK 65
           ++HS G + FSWE+KPG CK            +A PF   LG +          ++ +KK
Sbjct: 5   KSHSHGSIPFSWEDKPGVCKTPNNDFSEKNQKLASPFPPPLGPNHLRSNSRRMLEIEEKK 64

Query: 66  LRPPPCTSARKGQKKVQKDGVF---EDPFLAAFRECSNGEDEKNCKL-KQNKTG 95
           +  PPC      +   +K+  F   EDPFL A++EC+  + EKNCK+ ++NK G
Sbjct: 65  IPLPPCPLQAPRRSTSEKEKGFRWQEDPFLVAYKECT--KSEKNCKVPRKNKKG 116

BLAST of Carg21761 vs. NCBI nr
Match: XP_007155803.1 (hypothetical protein PHAVU_003G233000g [Phaseolus vulgaris] >ESW27797.1 hypothetical protein PHAVU_003G233000g [Phaseolus vulgaris])

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 38/116 (32.76%), Postives = 57/116 (49.14%), Query Frame = 0

Query: 6   RAHSRGRVAFSWENKPGECKA-------------AVAPPFYRLGDD----------DLGQ 65
           ++HS G + FSWE+KPG CK               +A P   L  +          ++  
Sbjct: 5   KSHSHGSIPFSWEDKPGVCKTPNSDFPLDIGMNQTLASPLPPLASNHLRSNSRRMLEIQD 64

Query: 66  KKLRPPPCTSARKGQKKVQKDGVF---EDPFLAAFRECSNGEDEKNCKL-KQNKTG 95
           KK+  PPC      +   +K+  F   EDPFL A++EC+  + EKNCK+ ++NK G
Sbjct: 65  KKIPLPPCQLQPPRRSTSEKEKGFRWQEDPFLVAYKECT--KSEKNCKVPRKNKKG 118

BLAST of Carg21761 vs. TrEMBL
Match: tr|A0A0A0L2M9|A0A0A0L2M9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-31
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 0

Query: 1  MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60
          M C+N+ HSRGRVAFSWENKPG CKAAVAPP      DD  +K+L+PPPCT ARKG KK+
Sbjct: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61 QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 96
          QKDG  EDPFLAA++EC++ +DEK CKLK+NK+GF
Sbjct: 61 QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGF 95

BLAST of Carg21761 vs. TrEMBL
Match: tr|A0A067DZ74|A0A067DZ74_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g044566mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 42/114 (36.84%), Postives = 57/114 (50.00%), Query Frame = 0

Query: 1   MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPC---------- 60
           M+ SN+ HS+G V FSWENKPG  K  +   F     D     KL PPPC          
Sbjct: 1   MSLSNKFHSKGNVPFSWENKPGVSKVIIHNGF---DGDGHCSSKLPPPPCQAESKKFSVT 60

Query: 61  ---TSARKGQKKVQKDGVFE-DPFLAAFRECSNGEDEKNCKL----KQNKTGFV 97
              +S+RKG      +   + DPFL A +EC+  ++ +NC +    K NKTG +
Sbjct: 61  CPESSSRKGLGLWNNNKHDQPDPFLVALKECT--KNARNCSMKSSNKNNKTGMM 109

BLAST of Carg21761 vs. TrEMBL
Match: tr|V4S1V1|V4S1V1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027255mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 0

Query: 1   MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPC---------- 60
           M+ SN+ HS+G V FSWENKPG  K  +   F     D     KL PPPC          
Sbjct: 1   MSLSNKFHSKGNVPFSWENKPGVSKVIIHNGF---DGDGHCSSKLPPPPCQEESKKFSVT 60

Query: 61  ---TSARKGQKKVQKDGVFE-DPFLAAFRECSNGEDEKNCKL----KQNKTGFVIRPLRF 109
              +S+RKG      +   + DPFL A +EC+  ++ +NC +    K NK G +    RF
Sbjct: 61  CPESSSRKGLGLWNNNKHDQPDPFLVALKECT--KNPRNCSMKSSNKNNKPGMMKGFFRF 120

BLAST of Carg21761 vs. TrEMBL
Match: tr|A0A0L9TPV9|A0A0L9TPV9_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g199800 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 0

Query: 6   RAHSRGRVAFSWENKPGECKA----------AVAPPF-YRLGDD----------DLGQKK 65
           ++HS G + FSWE+KPG CK            +A PF   LG +          ++ +KK
Sbjct: 5   KSHSHGSIPFSWEDKPGVCKTPNNDFSEKNQKLASPFPPPLGPNHLRSNSRRMLEIEEKK 64

Query: 66  LRPPPCTSARKGQKKVQKDGVF---EDPFLAAFRECSNGEDEKNCKL-KQNKTG 95
           +  PPC      +   +K+  F   EDPFL A++EC+  + EKNCK+ ++NK G
Sbjct: 65  IPLPPCPLQAPRRSTSEKEKGFRWQEDPFLVAYKECT--KSEKNCKVPRKNKKG 116

BLAST of Carg21761 vs. TrEMBL
Match: tr|A0A0S3R542|A0A0S3R542_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G361800 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 0

Query: 6   RAHSRGRVAFSWENKPGECKA----------AVAPPF-YRLGDD----------DLGQKK 65
           ++HS G + FSWE+KPG CK            +A PF   LG +          ++ +KK
Sbjct: 5   KSHSHGSIPFSWEDKPGVCKTPNNDFSEKNQKLASPFPPPLGPNHLRSNSRRMLEIEEKK 64

Query: 66  LRPPPCTSARKGQKKVQKDGVF---EDPFLAAFRECSNGEDEKNCKL-KQNKTG 95
           +  PPC      +   +K+  F   EDPFL A++EC+  + EKNCK+ ++NK G
Sbjct: 65  IPLPPCPLQAPRRSTSEKEKGFRWQEDPFLVAYKECT--KSEKNCKVPRKNKKG 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN55294.13.0e-3168.42hypothetical protein Csa_4G644710 [Cucumis sativus][more]
KDO43921.12.0e-0636.84hypothetical protein CISIN_1g044566mg, partial [Citrus sinensis][more]
ESR41328.14.4e-0634.13hypothetical protein CICLE_v10027255mg [Citrus clementina][more]
KOM32442.15.7e-0635.09hypothetical protein LR48_Vigan01g199800 [Vigna angularis] >BAT75708.1 hypotheti... [more]
XP_007155803.11.7e-0532.76hypothetical protein PHAVU_003G233000g [Phaseolus vulgaris] >ESW27797.1 hypothet... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L2M9|A0A0A0L2M9_CUCSA2.0e-3168.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1[more]
tr|A0A067DZ74|A0A067DZ74_CITSI1.3e-0636.84Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g044566m... [more]
tr|V4S1V1|V4S1V1_9ROSI2.9e-0634.13Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027255mg PE=4 ... [more]
tr|A0A0L9TPV9|A0A0L9TPV9_PHAAN3.8e-0635.09Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g199800 PE... [more]
tr|A0A0S3R542|A0A0S3R542_PHAAN3.8e-0635.09Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21761-RACarg21761-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..61

The following gene(s) are paralogous to this gene:

None