Cla97C05G108800 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G108800
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Glutamine synthetase
Location	Cla97Chr05 : 35393497 .. 35393889 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCAACAACAGAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAACCAGGGGTGTGCAAAGCAGCGGTGGCGCCGCCGCACTGCCGTCTTGATGACGAAGATTTGTTGAAGAAGCAGCTGCGGCCGCCGCCCTGTACTCCGGCGAGAAACGGCGACAGAAAGCTGCGGAAACATGGGGGCGTTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACAAATGGAGATGATGAGAAGATTTATAAGTTGAAGAAGAAAAAATCTGGGTTTGGAGGGTGGATGACGATGAACTTGTTTGGTAATTTGTCTTGCAAGAACTTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCCAAACGAAGCGTGTAA

mRNA sequence

ATGGCCTGCAACAACAGAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAACCAGGGGTGTGCAAAGCAGCGGTGGCGCCGCCGCACTGCCGTCTTGATGACGAAGATTTGTTGAAGAAGCAGCTGCGGCCGCCGCCCTGTACTCCGGCGAGAAACGGCGACAGAAAGCTGCGGAAACATGGGGGCGTTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACAAATGGAGATGATGAGAAGATTTATAAGTTGAAGAAGAAAAAATCTGGGTTTGGAGGGTGGATGACGATGAACTTGTTTGGTAATTTGTCTTGCAAGAACTTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCCAAACGAAGCGTGTAA

Coding sequence (CDS)

ATGGCCTGCAACAACAGAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAACCAGGGGTGTGCAAAGCAGCGGTGGCGCCGCCGCACTGCCGTCTTGATGACGAAGATTTGTTGAAGAAGCAGCTGCGGCCGCCGCCCTGTACTCCGGCGAGAAACGGCGACAGAAAGCTGCGGAAACATGGGGGCGTTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACAAATGGAGATGATGAGAAGATTTATAAGTTGAAGAAGAAAAAATCTGGGTTTGGAGGGTGGATGACGATGAACTTGTTTGGTAATTTGTCTTGCAAGAACTTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCCAAACGAAGCGTGTAA

Protein sequence

MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPCTPARNGDRKLRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSCKNLTAVRDDSLISSPVSKRSV

Homology

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BLAST of Cla97C05G108800 vs. NCBI nr
Match: KGN55294.1 (hypothetical protein Csa_4G644710 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 2.2e-54
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPCTPARNGDRKL 60
           MACNN+THSRGRVAFSWENKPGVCKAAVAPPH   D +D LKKQL+PPPCTPAR G++KL
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61  RKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSCKNLTAVRDDSL 120
           +K GG EDPFLAAY+ECT+ DDEK  KLKK KSGFGGWMT N F NLSCK LTAVRDDSL
Sbjct: 61  QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSL 120

Query: 121 ISSPVSKRSV 131
           ISSP SKR+V
Sbjct: 121 ISSPDSKRTV 130

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BLAST of Cla97C05G108800 vs. NCBI nr
Match: CBI19366.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 56/144 (38.89%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 5   NRTHSRGRVAFSWENKPGVCKA----------------AVAPPHCRLDD--EDLLKKQLR 64
           ++ HS+G V F+WENKPGVCKA                 + PP C L+     +   Q+ 
Sbjct: 4   SKIHSQGNVPFAWENKPGVCKARRDDEDCPTDTGHFVIKLQPPPCPLEKGRPSVHGSQIP 63

Query: 65  PPPCT----PARNGDRK--LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGG--W 123
            PPCT    P+RN  +K  LRK    EDPFLAAY+ECT          K  + G  G   
Sbjct: 64  LPPCTFQGPPSRNSSKKGHLRKQ---EDPFLAAYKECT----------KNTRKGHDGKTH 123

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BLAST of Cla97C05G108800 vs. NCBI nr
Match: OAY51045.1 (hypothetical protein MANES_05G183500 [Manihot esculenta])

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 0


Query: 6   RTHSRGRVAFSWENKPGVCKA------------AVAPPHCRLDDEDLLKK-----QLRPP 65
           + H +G V FSWE KPGV KA             + PP C ++++   +      Q+  P
Sbjct: 5   KAHPKGNVPFSWEKKPGVSKAISQMFHSEADFVKLPPPPCLIENQSPARVSTHDIQIPLP 64

Query: 66  PCT---PARNGDRK--LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNL 122
           PCT   P+R+  RK  L+K    EDPFLAAY+ECT    +       KK+  GG +  N+
Sbjct: 65  PCTFQPPSRSSSRKGGLKKQ---EDPFLAAYKECTKSTSD-----SNKKT--GGKLCRNV 124

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BLAST of Cla97C05G108800 vs. NCBI nr
Match: XP_021285055.1 (uncharacterized protein LOC110417148 [Herrania umbratica])

HSP 1 Score: 74.7 bits (182), Expect = 2.6e-10
Identity = 51/132 (38.64%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 8   HSRGRVAFSWENKPGVCKAA--------------VAPPHCRLDDEDLLK-KQLRPPPCT- 67
           HS+G V FSWENKPGVCK                 +PP+       L+   ++ PPPC  
Sbjct: 7   HSQGNVPFSWENKPGVCKLTSQEGSKEDYFLQKLPSPPYPPESARILIHGVKIPPPPCAF 66

Query: 68  --PARNGDRKLRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSC 122
             P +   R LRK    +DPFLAAY+ECT        K K  KS  G  +   +F N SC
Sbjct: 67  QHPFKTSRRGLRKS---DDPFLAAYKECTKSTS----KGKLAKSDGGSGLKKGMF-NFSC 126

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BLAST of Cla97C05G108800 vs. NCBI nr
Match: ONI33362.1 (hypothetical protein PRUPE_1G419300 [Prunus persica])

HSP 1 Score: 73.9 bits (180), Expect = 4.4e-10
Identity = 55/137 (40.15%), Postives = 67/137 (48.91%), Query Frame = 0


Query: 8   HSRGRVAFSWENKPGVCKAA--------VAPPHCRLDDE----DLLKKQLRPPPCT---- 67
           HS G+V FSWEN PGV KA         + PP C   +      L    L  PPCT    
Sbjct: 6   HSLGKVPFSWENMPGVSKATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQPL 65

Query: 68  PARNGDRKLRKHGGVEDPFLAAYRECTNGDDEKI---YKLKKK---KSGFGGWMTMNLFG 122
              +  + LRKH   EDPFL A++ECT   + K      L  K   +SG G W     FG
Sbjct: 66  SRSSSTKALRKH---EDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSW-----FG 125

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BLAST of Cla97C05G108800 vs. TrEMBL
Match: tr|A0A0A0L2M9|A0A0A0L2M9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.5e-54
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPCTPARNGDRKL 60
           MACNN+THSRGRVAFSWENKPGVCKAAVAPPH   D +D LKKQL+PPPCTPAR G++KL
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61  RKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSCKNLTAVRDDSL 120
           +K GG EDPFLAAY+ECT+ DDEK  KLKK KSGFGGWMT N F NLSCK LTAVRDDSL
Sbjct: 61  QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSL 120

Query: 121 ISSPVSKRSV 131
           ISSP SKR+V
Sbjct: 121 ISSPDSKRTV 130

[Close]

BLAST of Cla97C05G108800 vs. TrEMBL
Match: tr|E0CNY8|E0CNY8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g08660 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.0e-12
Identity = 56/144 (38.89%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 5   NRTHSRGRVAFSWENKPGVCKA----------------AVAPPHCRLDD--EDLLKKQLR 64
           ++ HS+G V F+WENKPGVCKA                 + PP C L+     +   Q+ 
Sbjct: 4   SKIHSQGNVPFAWENKPGVCKARRDDEDCPTDTGHFVIKLQPPPCPLEKGRPSVHGSQIP 63

Query: 65  PPPCT----PARNGDRK--LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGG--W 123
            PPCT    P+RN  +K  LRK    EDPFLAAY+ECT          K  + G  G   
Sbjct: 64  LPPCTFQGPPSRNSSKKGHLRKQ---EDPFLAAYKECT----------KNTRKGHDGKTH 123

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BLAST of Cla97C05G108800 vs. TrEMBL
Match: tr|A0A2N9EQJ5|A0A2N9EQJ5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8969 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.3e-12
Identity = 57/144 (39.58%), Postives = 72/144 (50.00%), Query Frame = 0


Query: 1   MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPC---------- 60
           M  +++ HS+G + FSWENKPGV K  V    C +D + +LK  L PPPC          
Sbjct: 1   MMSHSKAHSQGTIPFSWENKPGVSK--VTQQECPIDGDFVLK--LPPPPCLSEPAKISVH 60

Query: 61  ------------TPARNGDRK-LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGG 120
                        P+R+  +K LRK    EDPFLAAY ECT    + I K K  K+  G 
Sbjct: 61  DFQIPLPPCAFQPPSRSSSKKGLRKQ---EDPFLAAYMECT----KSIRKGKSIKNDVGS 120

Query: 121 WMTMNLFGNLSCKNLTAVRDDSLI 122
               NL    SCK   +VRDDSL+
Sbjct: 121 GFKKNLL-VFSCKRSCSVRDDSLV 132

[Close]

BLAST of Cla97C05G108800 vs. TrEMBL
Match: tr|A0A2N9EB23|A0A2N9EB23_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4048 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 56/143 (39.16%), Postives = 71/143 (49.65%), Query Frame = 0


Query: 1   MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPC---------- 60
           M  +++ HSRG + FSWENKPGV K  V    C  + + LLK  L  PPC          
Sbjct: 1   MMSHSKAHSRGIIPFSWENKPGVSK-LVTNQECHTEGDFLLK--LPTPPCPSEATTISGH 60

Query: 61  ------------TPARNGDRK-LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGG 120
                       +P+R+  +K LRKH   EDPFLAAY+ECT  +   I K K  K   G 
Sbjct: 61  DXXXXXXXXXFQSPSRSSSKKGLRKH---EDPFLAAYKECTKSN---IGKGKSLKYDVGL 120

[Close]

BLAST of Cla97C05G108800 vs. TrEMBL
Match: tr|A0A2C9VZY0|A0A2C9VZY0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G183500 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 0


Query: 6   RTHSRGRVAFSWENKPGVCKA------------AVAPPHCRLDDEDLLKK-----QLRPP 65
           + H +G V FSWE KPGV KA             + PP C ++++   +      Q+  P
Sbjct: 5   KAHPKGNVPFSWEKKPGVSKAISQMFHSEADFVKLPPPPCLIENQSPARVSTHDIQIPLP 64

Query: 66  PCT---PARNGDRK--LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNL 122
           PCT   P+R+  RK  L+K    EDPFLAAY+ECT    +       KK+  GG +  N+
Sbjct: 65  PCTFQPPSRSSSRKGGLKKQ---EDPFLAAYKECTKSTSD-----SNKKT--GGKLCRNV 124

The following BLAST results are available for this feature:

BLAST of Cla97C05G108800 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55294.1	2.2e-54	80.00	hypothetical protein Csa_4G644710 [Cucumis sativus]	[more]
CBI19366.3	6.1e-12	38.89	unnamed protein product, partial [Vitis vinifera]	[more]
OAY51045.1	2.0e-10	37.06	hypothetical protein MANES_05G183500 [Manihot esculenta]	[more]
XP_021285055.1	2.6e-10	38.64	uncharacterized protein LOC110417148 [Herrania umbratica]	[more]
ONI33362.1	4.4e-10	40.15	hypothetical protein PRUPE_1G419300 [Prunus persica]	[more]

BLAST of Cla97C05G108800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2M9\|A0A0A0L2M9_CUCSA	1.5e-54	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1	[more]
tr\|E0CNY8\|E0CNY8_VITVI	4.0e-12	38.89	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g08660 PE=4 SV=...	[more]
tr\|A0A2N9EQJ5\|A0A2N9EQJ5_FAGSY	5.3e-12	39.58	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8969 PE=4 SV=1	[more]
tr\|A0A2N9EB23\|A0A2N9EB23_FAGSY	1.5e-11	39.16	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4048 PE=4 SV=1	[more]
tr\|A0A2C9VZY0\|A0A2C9VZY0_MANES	1.3e-10	37.06	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G183500 PE=4 SV=...	[more]

BLAST of Cla97C05G108800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G108800 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044424	intracellular part
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G108800.1	Cla97C05G108800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..63
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 4..122
None	No IPR available	PANTHER	PTHR33696	FAMILY NOT NAMED	coord: 4..122

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G108800	Cla009961	Watermelon (97103) v1	wmwmbB207
Cla97C05G108800	Csa4G644710	Cucumber (Chinese Long) v2	cuwmbB309
Cla97C05G108800	MELO3C016838	Melon (DHL92) v3.5.1	mewmbB480
Cla97C05G108800	ClCG05G026550	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G108800	CSPI04G24980	Wild cucumber (PI 183967)	cpiwmbB319
Cla97C05G108800	CmaCh09G003070	Cucurbita maxima (Rimu)	cmawmbB032
Cla97C05G108800	CmoCh09G003090	Cucurbita moschata (Rifu)	cmowmbB020
Cla97C05G108800	Lsi04G014590	Bottle gourd (USVL1VR-Ls)	lsiwmbB287
Cla97C05G108800	CsGy4G023300	Cucumber (Gy14) v2	cgybwmbB292
Cla97C05G108800	MELO3C016838.2	Melon (DHL92) v3.6.1	medwmbB473
Cla97C05G108800	Carg21761	Silver-seed gourd	carwmbB0329
Cla97C05G108800	CsaV3_4G035270	Cucumber (Chinese Long) v3	cucwmbB318
Cla97C05G108800	Bhi09G002627	Wax gourd	wgowmbB575

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G108800	Silver-seed gourd	carwmbB0810
Cla97C05G108800	Cucumber (Gy14) v1	cgywmbB604
Cla97C05G108800	Cucurbita maxima (Rimu)	cmawmbB478
Cla97C05G108800	Cucurbita moschata (Rifu)	cmowmbB458