Cla97C05G108800.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G108800.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Glutamine synthetase
Location	Cla97Chr05 : 35393497 .. 35393889 (+)
Sequence length	393

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCAACAACAGAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAACCAGGGGTGTGCAAAGCAGCGGTGGCGCCGCCGCACTGCCGTCTTGATGACGAAGATTTGTTGAAGAAGCAGCTGCGGCCGCCGCCCTGTACTCCGGCGAGAAACGGCGACAGAAAGCTGCGGAAACATGGGGGCGTTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACAAATGGAGATGATGAGAAGATTTATAAGTTGAAGAAGAAAAAATCTGGGTTTGGAGGGTGGATGACGATGAACTTGTTTGGTAATTTGTCTTGCAAGAACTTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCCAAACGAAGCGTGTAA

mRNA sequence

ATGGCCTGCAACAACAGAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAACCAGGGGTGTGCAAAGCAGCGGTGGCGCCGCCGCACTGCCGTCTTGATGACGAAGATTTGTTGAAGAAGCAGCTGCGGCCGCCGCCCTGTACTCCGGCGAGAAACGGCGACAGAAAGCTGCGGAAACATGGGGGCGTTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACAAATGGAGATGATGAGAAGATTTATAAGTTGAAGAAGAAAAAATCTGGGTTTGGAGGGTGGATGACGATGAACTTGTTTGGTAATTTGTCTTGCAAGAACTTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCCAAACGAAGCGTGTAA

Coding sequence (CDS)

ATGGCCTGCAACAACAGAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAACCAGGGGTGTGCAAAGCAGCGGTGGCGCCGCCGCACTGCCGTCTTGATGACGAAGATTTGTTGAAGAAGCAGCTGCGGCCGCCGCCCTGTACTCCGGCGAGAAACGGCGACAGAAAGCTGCGGAAACATGGGGGCGTTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACAAATGGAGATGATGAGAAGATTTATAAGTTGAAGAAGAAAAAATCTGGGTTTGGAGGGTGGATGACGATGAACTTGTTTGGTAATTTGTCTTGCAAGAACTTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCCAAACGAAGCGTGTAA

Protein sequence

MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPCTPARNGDRKLRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSCKNLTAVRDDSLISSPVSKRSV

Homology

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BLAST of Cla97C05G108800.1 vs. NCBI nr
Match: KGN55294.1 (hypothetical protein Csa_4G644710 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 2.2e-54
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPCTPARNGDRKL 60
           MACNN+THSRGRVAFSWENKPGVCKAAVAPPH   D +D LKKQL+PPPCTPAR G++KL
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61  RKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSCKNLTAVRDDSL 120
           +K GG EDPFLAAY+ECT+ DDEK  KLKK KSGFGGWMT N F NLSCK LTAVRDDSL
Sbjct: 61  QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSL 120

Query: 121 ISSPVSKRSV 131
           ISSP SKR+V
Sbjct: 121 ISSPDSKRTV 130

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BLAST of Cla97C05G108800.1 vs. NCBI nr
Match: CBI19366.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 56/144 (38.89%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 5   NRTHSRGRVAFSWENKPGVCKA----------------AVAPPHCRLDD--EDLLKKQLR 64
           ++ HS+G V F+WENKPGVCKA                 + PP C L+     +   Q+ 
Sbjct: 4   SKIHSQGNVPFAWENKPGVCKARRDDEDCPTDTGHFVIKLQPPPCPLEKGRPSVHGSQIP 63

Query: 65  PPPCT----PARNGDRK--LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGG--W 123
            PPCT    P+RN  +K  LRK    EDPFLAAY+ECT          K  + G  G   
Sbjct: 64  LPPCTFQGPPSRNSSKKGHLRKQ---EDPFLAAYKECT----------KNTRKGHDGKTH 123

[Close]

BLAST of Cla97C05G108800.1 vs. NCBI nr
Match: OAY51045.1 (hypothetical protein MANES_05G183500 [Manihot esculenta])

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 0


Query: 6   RTHSRGRVAFSWENKPGVCKA------------AVAPPHCRLDDEDLLKK-----QLRPP 65
           + H +G V FSWE KPGV KA             + PP C ++++   +      Q+  P
Sbjct: 5   KAHPKGNVPFSWEKKPGVSKAISQMFHSEADFVKLPPPPCLIENQSPARVSTHDIQIPLP 64

Query: 66  PCT---PARNGDRK--LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNL 122
           PCT   P+R+  RK  L+K    EDPFLAAY+ECT    +       KK+  GG +  N+
Sbjct: 65  PCTFQPPSRSSSRKGGLKKQ---EDPFLAAYKECTKSTSD-----SNKKT--GGKLCRNV 124

[Close]

BLAST of Cla97C05G108800.1 vs. NCBI nr
Match: XP_021285055.1 (uncharacterized protein LOC110417148 [Herrania umbratica])

HSP 1 Score: 74.7 bits (182), Expect = 2.6e-10
Identity = 51/132 (38.64%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 8   HSRGRVAFSWENKPGVCKAA--------------VAPPHCRLDDEDLLK-KQLRPPPCT- 67
           HS+G V FSWENKPGVCK                 +PP+       L+   ++ PPPC  
Sbjct: 7   HSQGNVPFSWENKPGVCKLTSQEGSKEDYFLQKLPSPPYPPESARILIHGVKIPPPPCAF 66

Query: 68  --PARNGDRKLRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSC 122
             P +   R LRK    +DPFLAAY+ECT        K K  KS  G  +   +F N SC
Sbjct: 67  QHPFKTSRRGLRKS---DDPFLAAYKECTKSTS----KGKLAKSDGGSGLKKGMF-NFSC 126

[Close]

BLAST of Cla97C05G108800.1 vs. NCBI nr
Match: ONI33362.1 (hypothetical protein PRUPE_1G419300 [Prunus persica])

HSP 1 Score: 73.9 bits (180), Expect = 4.4e-10
Identity = 55/137 (40.15%), Postives = 67/137 (48.91%), Query Frame = 0


Query: 8   HSRGRVAFSWENKPGVCKAA--------VAPPHCRLDDE----DLLKKQLRPPPCT---- 67
           HS G+V FSWEN PGV KA         + PP C   +      L    L  PPCT    
Sbjct: 6   HSLGKVPFSWENMPGVSKATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQPL 65

Query: 68  PARNGDRKLRKHGGVEDPFLAAYRECTNGDDEKI---YKLKKK---KSGFGGWMTMNLFG 122
              +  + LRKH   EDPFL A++ECT   + K      L  K   +SG G W     FG
Sbjct: 66  SRSSSTKALRKH---EDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSW-----FG 125

[Close]

BLAST of Cla97C05G108800.1 vs. TrEMBL
Match: tr|A0A0A0L2M9|A0A0A0L2M9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.5e-54
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPCTPARNGDRKL 60
           MACNN+THSRGRVAFSWENKPGVCKAAVAPPH   D +D LKKQL+PPPCTPAR G++KL
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61  RKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSCKNLTAVRDDSL 120
           +K GG EDPFLAAY+ECT+ DDEK  KLKK KSGFGGWMT N F NLSCK LTAVRDDSL
Sbjct: 61  QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSL 120

Query: 121 ISSPVSKRSV 131
           ISSP SKR+V
Sbjct: 121 ISSPDSKRTV 130

[Close]

BLAST of Cla97C05G108800.1 vs. TrEMBL
Match: tr|E0CNY8|E0CNY8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g08660 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.0e-12
Identity = 56/144 (38.89%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 5   NRTHSRGRVAFSWENKPGVCKA----------------AVAPPHCRLDD--EDLLKKQLR 64
           ++ HS+G V F+WENKPGVCKA                 + PP C L+     +   Q+ 
Sbjct: 4   SKIHSQGNVPFAWENKPGVCKARRDDEDCPTDTGHFVIKLQPPPCPLEKGRPSVHGSQIP 63

Query: 65  PPPCT----PARNGDRK--LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGG--W 123
            PPCT    P+RN  +K  LRK    EDPFLAAY+ECT          K  + G  G   
Sbjct: 64  LPPCTFQGPPSRNSSKKGHLRKQ---EDPFLAAYKECT----------KNTRKGHDGKTH 123

[Close]

BLAST of Cla97C05G108800.1 vs. TrEMBL
Match: tr|A0A2N9EQJ5|A0A2N9EQJ5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8969 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.3e-12
Identity = 57/144 (39.58%), Postives = 72/144 (50.00%), Query Frame = 0


Query: 1   MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPC---------- 60
           M  +++ HS+G + FSWENKPGV K  V    C +D + +LK  L PPPC          
Sbjct: 1   MMSHSKAHSQGTIPFSWENKPGVSK--VTQQECPIDGDFVLK--LPPPPCLSEPAKISVH 60

Query: 61  ------------TPARNGDRK-LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGG 120
                        P+R+  +K LRK    EDPFLAAY ECT    + I K K  K+  G 
Sbjct: 61  DFQIPLPPCAFQPPSRSSSKKGLRKQ---EDPFLAAYMECT----KSIRKGKSIKNDVGS 120

Query: 121 WMTMNLFGNLSCKNLTAVRDDSLI 122
               NL    SCK   +VRDDSL+
Sbjct: 121 GFKKNLL-VFSCKRSCSVRDDSLV 132

[Close]

BLAST of Cla97C05G108800.1 vs. TrEMBL
Match: tr|A0A2N9EB23|A0A2N9EB23_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4048 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 56/143 (39.16%), Postives = 71/143 (49.65%), Query Frame = 0


Query: 1   MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPC---------- 60
           M  +++ HSRG + FSWENKPGV K  V    C  + + LLK  L  PPC          
Sbjct: 1   MMSHSKAHSRGIIPFSWENKPGVSK-LVTNQECHTEGDFLLK--LPTPPCPSEATTISGH 60

Query: 61  ------------TPARNGDRK-LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGG 120
                       +P+R+  +K LRKH   EDPFLAAY+ECT  +   I K K  K   G 
Sbjct: 61  DXXXXXXXXXFQSPSRSSSKKGLRKH---EDPFLAAYKECTKSN---IGKGKSLKYDVGL 120

[Close]

BLAST of Cla97C05G108800.1 vs. TrEMBL
Match: tr|A0A2C9VZY0|A0A2C9VZY0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G183500 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 0


Query: 6   RTHSRGRVAFSWENKPGVCKA------------AVAPPHCRLDDEDLLKK-----QLRPP 65
           + H +G V FSWE KPGV KA             + PP C ++++   +      Q+  P
Sbjct: 5   KAHPKGNVPFSWEKKPGVSKAISQMFHSEADFVKLPPPPCLIENQSPARVSTHDIQIPLP 64

Query: 66  PCT---PARNGDRK--LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNL 122
           PCT   P+R+  RK  L+K    EDPFLAAY+ECT    +       KK+  GG +  N+
Sbjct: 65  PCTFQPPSRSSSRKGGLKKQ---EDPFLAAYKECTKSTSD-----SNKKT--GGKLCRNV 124

The following BLAST results are available for this feature:

BLAST of Cla97C05G108800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55294.1	2.2e-54	80.00	hypothetical protein Csa_4G644710 [Cucumis sativus]	[more]
CBI19366.3	6.1e-12	38.89	unnamed protein product, partial [Vitis vinifera]	[more]
OAY51045.1	2.0e-10	37.06	hypothetical protein MANES_05G183500 [Manihot esculenta]	[more]
XP_021285055.1	2.6e-10	38.64	uncharacterized protein LOC110417148 [Herrania umbratica]	[more]
ONI33362.1	4.4e-10	40.15	hypothetical protein PRUPE_1G419300 [Prunus persica]	[more]

BLAST of Cla97C05G108800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2M9\|A0A0A0L2M9_CUCSA	1.5e-54	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1	[more]
tr\|E0CNY8\|E0CNY8_VITVI	4.0e-12	38.89	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g08660 PE=4 SV=...	[more]
tr\|A0A2N9EQJ5\|A0A2N9EQJ5_FAGSY	5.3e-12	39.58	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8969 PE=4 SV=1	[more]
tr\|A0A2N9EB23\|A0A2N9EB23_FAGSY	1.5e-11	39.16	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4048 PE=4 SV=1	[more]
tr\|A0A2C9VZY0\|A0A2C9VZY0_MANES	1.3e-10	37.06	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G183500 PE=4 SV=...	[more]

BLAST of Cla97C05G108800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G108800.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C05G108800	Cla97C05G108800	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C05G108800.1.exon.1	Cla97C05G108800.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C05G108800.1.CDS.1	Cla97C05G108800.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C05G108800.1	Cla97C05G108800.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..63
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 4..122
None	No IPR available	PANTHER	PTHR33696	FAMILY NOT NAMED	coord: 4..122