ClCG05G026550 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G026550
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 37785245 .. 37785637 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCAACAACAGAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAACCAGGGGTGTGCAAAGCAGCGGTGGCGCCGCCGCACTGCCGTCTTGATGACGAAGATTTGTTGAAGAAGCAGCTGCGGCCGCCGCCCTGTACTCCGGCGAGAAACGGCGACAGAAAGCTGCGGAAACATGGGGGCGTTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACAAATGGAGATGATGAGAAGATTTATAAGTTGAAGAAGAAAAAATCTGGGTTTGGAGGGTGGATGACGATGAACTTGTTTGGTAATTTGTCTTGCAAGAACTTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCCAAACGAAGCGTGTAA

mRNA sequence

ATGGCCTGCAACAACAGAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAACCAGGGGTGTGCAAAGCAGCGGTGGCGCCGCCGCACTGCCGTCTTGATGACGAAGATTTGTTGAAGAAGCAGCTGCGGCCGCCGCCCTGTACTCCGGCGAGAAACGGCGACAGAAAGCTGCGGAAACATGGGGGCGTTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACAAATGGAGATGATGAGAAGATTTATAAGTTGAAGAAGAAAAAATCTGGGTTTGGAGGGTGGATGACGATGAACTTGTTTGGTAATTTGTCTTGCAAGAACTTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCCAAACGAAGCGTGTAA

Coding sequence (CDS)

ATGGCCTGCAACAACAGAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAACCAGGGGTGTGCAAAGCAGCGGTGGCGCCGCCGCACTGCCGTCTTGATGACGAAGATTTGTTGAAGAAGCAGCTGCGGCCGCCGCCCTGTACTCCGGCGAGAAACGGCGACAGAAAGCTGCGGAAACATGGGGGCGTTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACAAATGGAGATGATGAGAAGATTTATAAGTTGAAGAAGAAAAAATCTGGGTTTGGAGGGTGGATGACGATGAACTTGTTTGGTAATTTGTCTTGCAAGAACTTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCCAAACGAAGCGTGTAA

Protein sequence

MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPCTPARNGDRKLRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSCKNLTAVRDDSLISSPVSKRSV

Homology

[Close]

BLAST of ClCG05G026550 vs. TrEMBL
Match: A0A0A0L2M9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.4e-54
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 1


Query: 1   MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPCTPARNGDRKL 60
           MACNN+THSRGRVAFSWENKPGVCKAAVAPPH   D +D LKKQL+PPPCTPAR G++KL
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61  RKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSCKNLTAVRDDSL 120
           +K GG EDPFLAAY+ECT+ DDEK  KLKK KSGFGGWMT N F NLSCK LTAVRDDSL
Sbjct: 61  QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSL 120

Query: 121 ISSPVSKRSV 131
           ISSP SKR+V
Sbjct: 121 ISSPDSKRTV 130

[Close]

BLAST of ClCG05G026550 vs. TrEMBL
Match: E0CNY8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08660 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-12
Identity = 56/144 (38.89%), Postives = 73/144 (50.69%), Query Frame = 1


Query: 5   NRTHSRGRVAFSWENKPGVCKA----------------AVAPPHCRLDD--EDLLKKQLR 64
           ++ HS+G V F+WENKPGVCKA                 + PP C L+     +   Q+ 
Sbjct: 4   SKIHSQGNVPFAWENKPGVCKARRDDEDCPTDTGHFVIKLQPPPCPLEKGRPSVHGSQIP 63

Query: 65  PPPCT----PARNGDRK--LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGG--W 123
            PPCT    P+RN  +K  LRK    EDPFLAAY+ECT          K  + G  G   
Sbjct: 64  LPPCTFQGPPSRNSSKKGHLRKQ---EDPFLAAYKECT----------KNTRKGHDGKTH 123

[Close]

BLAST of ClCG05G026550 vs. TrEMBL
Match: A0A061FEE8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_034658 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-10
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 1


Query: 8   HSRGRVAFSWENKPGVCKAA--------------VAPPH----CRLDDEDLLKKQLRPPP 67
           HS+G V FSWENKPGVCK                 +PP+     R+   D+   ++ PPP
Sbjct: 7   HSQGNVPFSWENKPGVCKLTSQEGSEEYYFLQKLPSPPYPPESARISIHDI---KIPPPP 66

Query: 68  CT---PARNGDRK-LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFG 122
           C    P +   R+ LRK    +DPFLAAY+ECT    +   KL K+  G G  +   +F 
Sbjct: 67  CAFQHPFKTSSRRGLRKS---DDPFLAAYKECTKNTSKG--KLAKRDGGSG--LKKGMF- 126

[Close]

BLAST of ClCG05G026550 vs. TrEMBL
Match: A0A0D2U7X0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G027300 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-10
Identity = 49/137 (35.77%), Postives = 63/137 (45.99%), Query Frame = 1


Query: 9   SRGRVAFSWENKPGVCKAA--VAPPHCRLDDEDLLKKQLRPPPC---------------- 68
           S+G V FSWENKPG+ K    +       DD   L+K+L PPPC                
Sbjct: 4   SQGNVPFSWENKPGISKETPQLLQSFKEGDDHYTLQKKLPPPPCRLEIAKVPMHDIAIPL 63

Query: 69  ------TPARNGDRKLRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLF 122
                  P R   +     GG +DPFLAAY+ECT G +       K K G G ++    F
Sbjct: 64  PPCVFQPPLRTCSKGSGVDGG-DDPFLAAYKECTKGSN-------KGKKGRGWFVLKKGF 123

[Close]

BLAST of ClCG05G026550 vs. TrEMBL
Match: A0A0S3R542_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G361800 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 44/140 (31.43%), Postives = 68/140 (48.57%), Query Frame = 1


Query: 4   NNRTHSRGRVAFSWENKPGVCKA------------------AVAPPHCRLDDEDLL---K 63
           + ++HS G + FSWE+KPGVCK                    + P H R +   +L   +
Sbjct: 3   HRKSHSHGSIPFSWEDKPGVCKTPNNDFSEKNQKLASPFPPPLGPNHLRSNSRRMLEIEE 62

Query: 64  KQLRPPPC---TPARNGDRKLRKHGGVEDPFLAAYRECTNGDDE-KIYKLKKKKSGFGGW 119
           K++  PPC    P R+   K +     EDPFL AY+ECT  +   K+ +  KK  G    
Sbjct: 63  KKIPLPPCPLQAPRRSTSEKEKGFRWQEDPFLVAYKECTKSEKNCKVPRKNKKGVGSNFR 122

[Close]

BLAST of ClCG05G026550 vs. NCBI nr
Match: gi|700200136|gb|KGN55294.1| (hypothetical protein Csa_4G644710 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-54
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 1


Query: 1   MACNNRTHSRGRVAFSWENKPGVCKAAVAPPHCRLDDEDLLKKQLRPPPCTPARNGDRKL 60
           MACNN+THSRGRVAFSWENKPGVCKAAVAPPH   D +D LKKQL+PPPCTPAR G++KL
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61  RKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFGNLSCKNLTAVRDDSL 120
           +K GG EDPFLAAY+ECT+ DDEK  KLKK KSGFGGWMT N F NLSCK LTAVRDDSL
Sbjct: 61  QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSL 120

Query: 121 ISSPVSKRSV 131
           ISSP SKR+V
Sbjct: 121 ISSPDSKRTV 130

[Close]

BLAST of ClCG05G026550 vs. NCBI nr
Match: gi|731428900|ref|XP_010664483.1| (PREDICTED: uncharacterized protein LOC104882514 [Vitis vinifera])

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-12
Identity = 56/144 (38.89%), Postives = 73/144 (50.69%), Query Frame = 1


Query: 5   NRTHSRGRVAFSWENKPGVCKA----------------AVAPPHCRLDD--EDLLKKQLR 64
           ++ HS+G V F+WENKPGVCKA                 + PP C L+     +   Q+ 
Sbjct: 4   SKIHSQGNVPFAWENKPGVCKARRDDEDCPTDTGHFVIKLQPPPCPLEKGRPSVHGSQIP 63

Query: 65  PPPCT----PARNGDRK--LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGG--W 123
            PPCT    P+RN  +K  LRK    EDPFLAAY+ECT          K  + G  G   
Sbjct: 64  LPPCTFQGPPSRNSSKKGHLRKQ---EDPFLAAYKECT----------KNTRKGHDGKTH 123

[Close]

BLAST of ClCG05G026550 vs. NCBI nr
Match: gi|596263599|ref|XP_007224960.1| (hypothetical protein PRUPE_ppa021117mg [Prunus persica])

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-10
Identity = 55/136 (40.44%), Postives = 67/136 (49.26%), Query Frame = 1


Query: 8   HSRGRVAFSWENKPGVCKAA--------VAPPHCRLDDED----LLKKQLRPPPCT---- 67
           HS G+V FSWEN PGV KA         + PP C   +      L    L  PPCT    
Sbjct: 6   HSLGKVPFSWENMPGVSKATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQPL 65

Query: 68  PARNGDRKLRKHGGVEDPFLAAYRECTNGDDEKIYK---LKKK---KSGFGGWMTMNLFG 122
              +  + LRKH   EDPFL A++ECT   + K      L  K   +SG G W     FG
Sbjct: 66  SRSSSTKALRKH---EDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSWFG---FG 125

[Close]

BLAST of ClCG05G026550 vs. NCBI nr
Match: gi|590596796|ref|XP_007018435.1| (Uncharacterized protein TCM_034658 [Theobroma cacao])

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-10
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 1


Query: 8   HSRGRVAFSWENKPGVCKAA--------------VAPPH----CRLDDEDLLKKQLRPPP 67
           HS+G V FSWENKPGVCK                 +PP+     R+   D+   ++ PPP
Sbjct: 7   HSQGNVPFSWENKPGVCKLTSQEGSEEYYFLQKLPSPPYPPESARISIHDI---KIPPPP 66

Query: 68  CT---PARNGDRK-LRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLFG 122
           C    P +   R+ LRK    +DPFLAAY+ECT    +   KL K+  G G  +   +F 
Sbjct: 67  CAFQHPFKTSSRRGLRKS---DDPFLAAYKECTKNTSKG--KLAKRDGGSG--LKKGMF- 126

[Close]

BLAST of ClCG05G026550 vs. NCBI nr
Match: gi|823231349|ref|XP_012448385.1| (PREDICTED: uncharacterized protein LOC105771464 [Gossypium raimondii])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 49/137 (35.77%), Postives = 63/137 (45.99%), Query Frame = 1


Query: 9   SRGRVAFSWENKPGVCKAA--VAPPHCRLDDEDLLKKQLRPPPC---------------- 68
           S+G V FSWENKPG+ K    +       DD   L+K+L PPPC                
Sbjct: 4   SQGNVPFSWENKPGISKETPQLLQSFKEGDDHYTLQKKLPPPPCRLEIAKVPMHDIAIPL 63

Query: 69  ------TPARNGDRKLRKHGGVEDPFLAAYRECTNGDDEKIYKLKKKKSGFGGWMTMNLF 122
                  P R   +     GG +DPFLAAY+ECT G +       K K G G ++    F
Sbjct: 64  PPCVFQPPLRTCSKGSGVDGG-DDPFLAAYKECTKGSN-------KGKKGRGWFVLKKGF 123

The following BLAST results are available for this feature:

BLAST of ClCG05G026550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2M9_CUCSA	1.4e-54	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G644710 PE=4 SV=1	[more]
E0CNY8_VITVI	2.9e-12	38.89	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08660 PE=4 SV=...	[more]
A0A061FEE8_THECC	3.5e-10	38.24	Uncharacterized protein OS=Theobroma cacao GN=TCM_034658 PE=4 SV=1	[more]
A0A0D2U7X0_GOSRA	7.8e-10	35.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G027300 PE=4 SV=1	[more]
A0A0S3R542_PHAAN	5.0e-09	31.43	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G361800 PE=...	[more]

BLAST of ClCG05G026550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200136\|gb\|KGN55294.1\|	1.9e-54	80.00	hypothetical protein Csa_4G644710 [Cucumis sativus]	[more]
gi\|731428900\|ref\|XP_010664483.1\|	4.1e-12	38.89	PREDICTED: uncharacterized protein LOC104882514 [Vitis vinifera]	[more]
gi\|596263599\|ref\|XP_007224960.1\|	3.8e-10	40.44	hypothetical protein PRUPE_ppa021117mg [Prunus persica]	[more]
gi\|590596796\|ref\|XP_007018435.1\|	5.0e-10	38.24	Uncharacterized protein TCM_034658 [Theobroma cacao]	[more]
gi\|823231349\|ref\|XP_012448385.1\|	1.1e-09	35.77	PREDICTED: uncharacterized protein LOC105771464 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044424	intracellular part
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G026550.1	ClCG05G026550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33696	FAMILY NOT NAMED	coord: 4..120 score: 9.0
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 4..120 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G026550	Csa4G644710	Cucumber (Chinese Long) v2	cuwcgB313
ClCG05G026550	MELO3C016838	Melon (DHL92) v3.5.1	mewcgB475
ClCG05G026550	Cla009961	Watermelon (97103) v1	wcgwmB285
ClCG05G026550	Cla97C05G108800	Watermelon (97103) v2	wcgwmbB229
ClCG05G026550	Bhi09G002627	Wax gourd	wcgwgoB475
ClCG05G026550	CSPI04G24980	Wild cucumber (PI 183967)	cpiwcgB329
ClCG05G026550	CmaCh09G003070	Cucurbita maxima (Rimu)	cmawcgB027
ClCG05G026550	CmoCh09G003090	Cucurbita moschata (Rifu)	cmowcgB021
ClCG05G026550	Lsi04G014590	Bottle gourd (USVL1VR-Ls)	lsiwcgB286
ClCG05G026550	Cp4.1LG06g02130	Cucurbita pepo (Zucchini)	cpewcgB706
ClCG05G026550	CsGy4G023300	Cucumber (Gy14) v2	cgybwcgB292
ClCG05G026550	MELO3C016838.2	Melon (DHL92) v3.6.1	medwcgB469
ClCG05G026550	Carg21761	Silver-seed gourd	carwcgB0312
ClCG05G026550	CsaV3_4G035270	Cucumber (Chinese Long) v3	cucwcgB328

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G026550	Silver-seed gourd	carwcgB0751
ClCG05G026550	Cucumber (Gy14) v1	cgywcgB601
ClCG05G026550	Cucurbita moschata (Rifu)	cmowcgB410
ClCG05G026550	Cucurbita pepo (Zucchini)	cpewcgB521