MELO3C016838.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016838.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Glutamine synthetase
Location	chr07 : 1738905 .. 1739306 (+)
Sequence length	402

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCGAACCGCTTCTGTGACGACAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATGACGATGAACTTTTTTGGTAATCTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAA

mRNA sequence

ATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCGAACCGCTTCTGTGACGACAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATGACGATGAACTTTTTTGGTAATCTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAA

Coding sequence (CDS)

ATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCGAACCGCTTCTGTGACGACAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATGACGATGAACTTTTTTGGTAATCTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAA

Protein sequence

MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV

Homology

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BLAST of MELO3C016838.2.1 vs. NCBI nr
Match: KGN55294.1 (hypothetical protein Csa_4G644710 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 4.2e-40
Identity = 89/133 (66.92%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ F                          
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGF---CDGDDPLKKQLQPPPCTPARKGN 60

Query: 61  XXXXXXXXXEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120
                    EDPFLAAY+ECTSEDDEK CKLKKNK GFGGWMT NFF NLSCKQLTAVRD
Sbjct: 61  KKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKRTV 134
           DSLISSP SKRTV
Sbjct: 121 DSLISSPDSKRTV 130

[Close]

BLAST of MELO3C016838.2.1 vs. NCBI nr
Match: OMO70852.1 (hypothetical protein COLO4_28461 [Corchorus olitorius])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 59/136 (43.38%), Postives = 69/136 (50.74%), Query Frame = 0


Query: 6   KTHSRGRVAFSWENRPGVCKAA-----------------VAPPNRFXXXXXXXXXXXXXX 65
           K HS+G V FSWEN+PGVCK                     PP               XX
Sbjct: 5   KVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQDNKXX 64

Query: 66  XXXXXXXXXXXXXXXXXXXXXEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFG 125
           XXXXXXXXXXXXXXX      +DPFLAAY+ECT   ++   KL KN  G G         
Sbjct: 65  XXXXXXXXXXXXXXXRGLKKSDDPFLAAYKECTKSTNKG--KLAKNVNGGGSGNLKKGVF 124

[Close]

BLAST of MELO3C016838.2.1 vs. NCBI nr
Match: AES90757.1 (hypothetical protein MTR_4g097480 [Medicago truncatula])

HSP 1 Score: 59.7 bits (143), Expect = 8.7e-06
Identity = 41/143 (28.67%), Postives = 60/143 (41.96%), Query Frame = 0


Query: 4   NNKTHSRGRVAFSWENRPGVCK---------------AAVAPPNRF-----XXXXXXXXX 63
           + K+HS G + FSWE++PG+CK               ++   P+ F              
Sbjct: 3   HRKSHSYGSIPFSWEDKPGICKTPNNECPLNSINKKSSSKLSPSHFDNISKKNILEFQDK 62

Query: 64  XXXXXXXXXXXXXXXXXXXXXXXXXXEDPFLAAYRECTSEDDEKNCKLK-KNKYGFG-GW 123
                                     EDPFL AY+ECT  D  KNCK++ KNK G G  +
Sbjct: 63  KISIPLPPCQTQPPQRSTSGKGFKLQEDPFLVAYKECTKSD--KNCKMQSKNKKGVGFNF 122

Query: 124 MTMNFFGNLSCKQLTAVRDDSLI 125
           +++  +   SC+    V+DDS I
Sbjct: 123 VSLRSYSIFSCRSAIDVKDDSYI 143

[Close]

BLAST of MELO3C016838.2.1 vs. NCBI nr
Match: ONI33362.1 (hypothetical protein PRUPE_1G419300 [Prunus persica])

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 42/130 (32.31%), Postives = 53/130 (40.77%), Query Frame = 0


Query: 8   HSRGRVAFSWENRPGVCKAAVAPPNRF-----------XXXXXXXXXXXXXXXXXXXXXX 67
           HS G+V FSWEN PGV K A  PP+ +                                 
Sbjct: 6   HSLGKVPFSWENMPGVSK-ATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQP 65

Query: 68  XXXXXXXXXXXXXEDPFLAAYRECTS--EDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQ 125
                        EDPFL A++ECT   E   K+     NKY F   +   F   LSCK+
Sbjct: 66  LSRSSSTKALRKHEDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSWFGFGLSCKR 125

[Close]

BLAST of MELO3C016838.2.1 vs. NCBI nr
Match: PQP93470.1 (pre-mRNA-processing protein 40A isoform X1 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 45/140 (32.14%), Postives = 59/140 (42.14%), Query Frame = 0


Query: 8   HSRGRVAFSWENRPGVCKAAVAPPNRF-----------XXXXXXXXXXXXXXXXXXXXXX 67
           +S G+V FSWEN+PGV K A  PP+ +                                 
Sbjct: 9   YSLGKVPFSWENKPGVSK-ATQPPHPYRELPPPPCPCGEAPPKLSLQDFHLPLPPCTFQP 68

Query: 68  XXXXXXXXXXXXXEDPFLAAYRECTS--EDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQ 127
                        EDPFL A++ECT   E   K+     NKY F   +   F   LSCKQ
Sbjct: 69  LSRSSSTKAFRKHEDPFLVAFQECTKPPEGKAKDKTTSSNKYRFRSELGSWFGFGLSCKQ 128

Query: 128 LTAVRDDSL---ISSPVSKR 132
            ++VRDDSL   ISS + ++
Sbjct: 129 SSSVRDDSLSARISSSIVRQ 147

[Close]

BLAST of MELO3C016838.2.1 vs. TrEMBL
Match: tr|A0A0A0L2M9|A0A0A0L2M9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.7e-40
Identity = 89/133 (66.92%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ F                          
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGF---CDGDDPLKKQLQPPPCTPARKGN 60

Query: 61  XXXXXXXXXEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120
                    EDPFLAAY+ECTSEDDEK CKLKKNK GFGGWMT NFF NLSCKQLTAVRD
Sbjct: 61  KKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKRTV 134
           DSLISSP SKRTV
Sbjct: 121 DSLISSPDSKRTV 130

[Close]

BLAST of MELO3C016838.2.1 vs. TrEMBL
Match: tr|A0A1R3HKK6|A0A1R3HKK6_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.9e-07
Identity = 59/136 (43.38%), Postives = 69/136 (50.74%), Query Frame = 0


Query: 6   KTHSRGRVAFSWENRPGVCKAA-----------------VAPPNRFXXXXXXXXXXXXXX 65
           K HS+G V FSWEN+PGVCK                     PP               XX
Sbjct: 5   KVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQDNKXX 64

Query: 66  XXXXXXXXXXXXXXXXXXXXXEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFG 125
           XXXXXXXXXXXXXXX      +DPFLAAY+ECT   ++   KL KN  G G         
Sbjct: 65  XXXXXXXXXXXXXXXRGLKKSDDPFLAAYKECTKSTNKG--KLAKNVNGGGSGNLKKGVF 124

[Close]

BLAST of MELO3C016838.2.1 vs. TrEMBL
Match: tr|G7JF88|G7JF88_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11407276 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.8e-06
Identity = 41/143 (28.67%), Postives = 60/143 (41.96%), Query Frame = 0


Query: 4   NNKTHSRGRVAFSWENRPGVCK---------------AAVAPPNRF-----XXXXXXXXX 63
           + K+HS G + FSWE++PG+CK               ++   P+ F              
Sbjct: 3   HRKSHSYGSIPFSWEDKPGICKTPNNECPLNSINKKSSSKLSPSHFDNISKKNILEFQDK 62

Query: 64  XXXXXXXXXXXXXXXXXXXXXXXXXXEDPFLAAYRECTSEDDEKNCKLK-KNKYGFG-GW 123
                                     EDPFL AY+ECT  D  KNCK++ KNK G G  +
Sbjct: 63  KISIPLPPCQTQPPQRSTSGKGFKLQEDPFLVAYKECTKSD--KNCKMQSKNKKGVGFNF 122

Query: 124 MTMNFFGNLSCKQLTAVRDDSLI 125
           +++  +   SC+    V+DDS I
Sbjct: 123 VSLRSYSIFSCRSAIDVKDDSYI 143

[Close]

BLAST of MELO3C016838.2.1 vs. TrEMBL
Match: tr|M5XJQ6|M5XJQ6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021117mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 42/130 (32.31%), Postives = 53/130 (40.77%), Query Frame = 0


Query: 8   HSRGRVAFSWENRPGVCKAAVAPPNRF-----------XXXXXXXXXXXXXXXXXXXXXX 67
           HS G+V FSWEN PGV K A  PP+ +                                 
Sbjct: 6   HSLGKVPFSWENMPGVSK-ATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQP 65

Query: 68  XXXXXXXXXXXXXEDPFLAAYRECTS--EDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQ 125
                        EDPFL A++ECT   E   K+     NKY F   +   F   LSCK+
Sbjct: 66  LSRSSSTKALRKHEDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSWFGFGLSCKR 125

[Close]

BLAST of MELO3C016838.2.1 vs. TrEMBL
Match: tr|A0A251RBI7|A0A251RBI7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G419300 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 42/130 (32.31%), Postives = 53/130 (40.77%), Query Frame = 0


Query: 8   HSRGRVAFSWENRPGVCKAAVAPPNRF-----------XXXXXXXXXXXXXXXXXXXXXX 67
           HS G+V FSWEN PGV K A  PP+ +                                 
Sbjct: 6   HSLGKVPFSWENMPGVSK-ATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQP 65

Query: 68  XXXXXXXXXXXXXEDPFLAAYRECTS--EDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQ 125
                        EDPFL A++ECT   E   K+     NKY F   +   F   LSCK+
Sbjct: 66  LSRSSSTKALRKHEDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSWFGFGLSCKR 125

The following BLAST results are available for this feature:

BLAST of MELO3C016838.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55294.1	4.2e-40	66.92	hypothetical protein Csa_4G644710 [Cucumis sativus]	[more]
OMO70852.1	1.3e-06	43.38	hypothetical protein COLO4_28461 [Corchorus olitorius]	[more]
AES90757.1	8.7e-06	28.67	hypothetical protein MTR_4g097480 [Medicago truncatula]	[more]
ONI33362.1	3.3e-05	32.31	hypothetical protein PRUPE_1G419300 [Prunus persica]	[more]
PQP93470.1	3.3e-05	32.14	pre-mRNA-processing protein 40A isoform X1 [Prunus yedoensis var. nudiflora]	[more]

BLAST of MELO3C016838.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C016838.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C016838.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2M9\|A0A0A0L2M9_CUCSA	2.7e-40	66.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1	[more]
tr\|A0A1R3HKK6\|A0A1R3HKK6_9ROSI	8.9e-07	43.38	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1	[more]
tr\|G7JF88\|G7JF88_MEDTR	5.8e-06	28.67	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11407276 PE=4 SV=1	[more]
tr\|M5XJQ6\|M5XJQ6_PRUPE	2.2e-05	32.31	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021117mg PE=4 SV=1	[more]
tr\|A0A251RBI7\|A0A251RBI7_PRUPE	2.2e-05	32.31	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G419300 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C016838.2	MELO3C016838.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C016838.2.1.CDS.1	MELO3C016838.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C016838.2.1.exon.1	MELO3C016838.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C016838.2.1	MELO3C016838.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..66
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 69..125
None	No IPR available	PANTHER	PTHR33696	FAMILY NOT NAMED	coord: 69..125 coord: 4..57
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 4..57