MELO3C016214.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016214.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Late embryogenesis abundant protein
Location	chr07 : 22289729 .. 22290669 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTCAAATTCAAGTTTGTAATTCTTCATAAAAATTCAAAAATTAAAACAAAAAATTTCAATTCAAAAGCTCAGTCAAATTACCTCACAAATTTCAAAGGGGACACCAAAAAACAAGATAACAATCTCCACCGCCGGATGTGGACCGCCCCCGCCCTTACGGTGGCTAACTAATCTCCGACGCAAAGCGCCGCACTCATCCTCTTGTTTGGCTCGCTGCCTTACTCTGTACCGTAGTTTCAATCGCCGTCATAATCGGAGGCATCGTCGTCTTCATCGGTTACCTAGTCATCCACCCTAGGATTCCGACCATCTCCATTCTCGACGCTCATCTCGACAATTTCCAAATTGACATCGCCGGCCGCCTCGAAGTTCAGTTAACGATCGTCGTTGAAGCAAAGAATGATAACGCGAAAGCTCACGCCAGTTTCTCGGATTCGAGTTTCTTCCTCCATTTCTTAGAGATCAAGATCGCACAACTTGTGGCGGATCCATTCGAAGTGAAGAAGAACAGTTCAATGAAATTCCATTACGCTGTTGCCTCGAATTCAATTCCTCTGAATCCAGAGCAAATGGAGACCGTTGATTATGATTTGAAGGCAGATCTGAGTCCATTTACTTTGATAGGGAATACGAGAGTTCAATGGCGGGTTGGATTGCTTGGATCTGTGAAGTATGAATGTCATCTTCATTGTGAGCTTAAATTTCATCCTTCTAATGGAACTTATTTGAGATCTCCATGCAGTTCCAGAGTTAAATGATTTCTTCTATGTTCTTTAGAATCAATTTTTTTTTTCTTTTCTTCTTCTTCTTCTTCTTCTTAAACCAATTTGGATTAGTGAAAAATAAAATTTGAAATCCTGAAATAATTTCATCACAATTTTTTTCCCATTCTGTATTAGACAACTCTTTGATGAGATAACTTCTTTCTATTCTCATT

mRNA sequence

CTCTTTCAAATTCAAGTTTGTAATTCTTCATAAAAATTCAAAAATTAAAACAAAAAATTTCAATTCAAAAGCTCAGTCAAATTACCTCACAAATTTCAAAGGGGACACCAAAAAACAAGATAACAATCTCCACCGCCGGATGTGGACCGCCCCCGCCCttacggtggctAACTAATCTCCGACGCAAAGCGCCGCACTCATCCTCTTGTTTGGCTCGCTGCCTTACTCTGTACCGTAGTTTCAATCGCCGTCATAATCGGAGGCATCGTCGTCTTCATCGGTTACCTAGTCATCCACCCTAGGATTCCGACCATCTCCATTCTCGACGCTCATCTCGACAATTTCCAAATTGACATCGCCGGCCGCCTCGAAGTTCAGTTAACGATCGTCGTTGAAGCAAAGAATGATAACGCGAAAGCTCACGCCAGTTTCTCGGATTCGAGTTTCTTCCTCCATTTCTTAGAGATCAAGATCGCACAACTTGTGGCGGATCCATTCGAAGTGAAGAAGAACAGTTCAATGAAATTCCATTACGCTGTTGCCTCGAATTCAATTCCTCTGAATCCAGAGCAAATGGAGACCGTTGATTATGATTTGAAGGCAGATCTGAGTCCATTTACTTTGATAGGGAATACGAGAGTTCAATGGCGGGTTGGATTGCTTGGATCTGTGAAGTATGAATGTCATCTTCATTGTGAGCTTAAATTTCATCCTTCTAATGGAACTTATTTGAGATCTCCATGCAGTTCCAGAGTTAAATGATTTCTTCTATGTTCTTTAGAATCAATTTTTTTTTTCTTTTCTTCTTCTTCTTCTTCTTCTTAAACCAATTTGGATTAGTGAAAAATAAAATTTGAAATCCTGAAATAATTTCATCACAATTTTTTTCCCATTCTGTATTAGACAACTCTTTGATGAGATAACTTCTTTCTATTCTCATT

Coding sequence (CDS)

ATGAAATTCCATTACGCTGTTGCCTCGAATTCAATTCCTCTGAATCCAGAGCAAATGGAGACCGTTGATTATGATTTGAAGGCAGATCTGAGTCCATTTACTTTGATAGGGAATACGAGAGTTCAATGGCGGGTTGGATTGCTTGGATCTGTGAAGTATGAATGTCATCTTCATTGTGAGCTTAAATTTCATCCTTCTAATGGAACTTATTTGAGATCTCCATGCAGTTCCAGAGTTAAATGA

Protein sequence

MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCELKFHPSNGTYLRSPCSSRVK

Homology

[Close]

BLAST of MELO3C016214.2 vs. NCBI nr
Match: XP_008451870.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 8.6e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 60
           MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 61  LKFHPSNGTYLRSPCSSRVK 81
           LKFHPSNGTYLRSPCSSRVK
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of MELO3C016214.2 vs. NCBI nr
Match: XP_004150550.1 (PREDICTED: uncharacterized protein LOC101214190 [Cucumis sativus] >KGN53464.1 hypothetical protein Csa_4G056550 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 2.0e-34
Identity = 72/80 (90.00%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1   MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 60
           MKF YAV SNSIPLNPEQME+VD DLKADLS F LIGNTRVQWRVGLLGSVKYECHLHC 
Sbjct: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180

Query: 61  LKFHPSNGTYLRSPCSSRVK 81
           LKFHPSNGTYL SPCSSRVK
Sbjct: 181 LKFHPSNGTYLSSPCSSRVK 200

[Close]

BLAST of MELO3C016214.2 vs. NCBI nr
Match: XP_022136394.1 (uncharacterized protein LOC111008115 [Momordica charantia])

HSP 1 Score: 140.2 bits (352), Expect = 3.1e-30
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 2   KFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCEL 61
           KF YA+AS+SIPLNPEQME  DY LK+DLS F L GNTRVQWRVG+LGSVKY CHLHCEL
Sbjct: 122 KFQYAIASSSIPLNPEQMEEADYALKSDLSRFDLKGNTRVQWRVGMLGSVKYWCHLHCEL 181

Query: 62  KFHPSNGTYLRSPCSSRVK 81
           KFHPSNGTYL  PCSS+ K
Sbjct: 182 KFHPSNGTYLSLPCSSKAK 200

[Close]

BLAST of MELO3C016214.2 vs. NCBI nr
Match: XP_022985334.1 (uncharacterized protein LOC111483375 [Cucurbita maxima])

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-29
Identity = 62/80 (77.50%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1   MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 60
           +  HY VASNSIPL PEQME VDY LK+D+S F LIG+TRVQWRVGLLGSVKY CHLHC 
Sbjct: 121 LMLHYEVASNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180

Query: 61  LKFHPSNGTYLRSPCSSRVK 81
           LKFHPSNGTY   PCSSR K
Sbjct: 181 LKFHPSNGTYFSPPCSSRAK 200

[Close]

BLAST of MELO3C016214.2 vs. NCBI nr
Match: XP_022931289.1 (uncharacterized protein LOC111437517 [Cucurbita moschata] >XP_023552821.1 uncharacterized protein LOC111810341 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 6.4e-28
Identity = 60/76 (78.95%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 5   YAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCELKFH 64
           Y V SNSIPL PEQME VDY LK+D+S F LIG+TRVQWRVGLLGSVKY CHLHC LKFH
Sbjct: 125 YVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCVLKFH 184

Query: 65  PSNGTYLRSPCSSRVK 81
           PSNGTY   PCSSR K
Sbjct: 185 PSNGTYFSPPCSSRAK 200

[Close]

BLAST of MELO3C016214.2 vs. TAIR10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-19
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 5   YAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCELKFH 64
           Y V S  IPLNP  M+ VDY +K D+  F L G +R +WRVG LGSVK+EC+L C+L+F 
Sbjct: 122 YLVQSYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLRFR 181

Query: 65  PSNGTYLRSPCSSRVK 81
           PS+ +Y+ SPC+S  K
Sbjct: 182 PSDHSYIPSPCTSAHK 197

[Close]

BLAST of MELO3C016214.2 vs. TrEMBL
Match: tr|A0A1S3BSH0|A0A1S3BSH0_CUCME (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103493029 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.7e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 60
           MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 61  LKFHPSNGTYLRSPCSSRVK 81
           LKFHPSNGTYLRSPCSSRVK
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of MELO3C016214.2 vs. TrEMBL
Match: tr|A0A0A0KX91|A0A0A0KX91_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 72/80 (90.00%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1   MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 60
           MKF YAV SNSIPLNPEQME+VD DLKADLS F LIGNTRVQWRVGLLGSVKYECHLHC 
Sbjct: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180

Query: 61  LKFHPSNGTYLRSPCSSRVK 81
           LKFHPSNGTYL SPCSSRVK
Sbjct: 181 LKFHPSNGTYLSSPCSSRVK 200

[Close]

BLAST of MELO3C016214.2 vs. TrEMBL
Match: tr|M5WBE7|M5WBE7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G014700 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-21
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 3   FHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCELK 62
           FHY V S+SIPL+PEQM+ +D  LK D   F L GN R +WRVG +GSVK+  HL+C L+
Sbjct: 124 FHYLVQSSSIPLSPEQMDQIDISLKRDKISFNLKGNLRARWRVGPIGSVKFWGHLNCHLR 183

Query: 63  FHPSNGTYLRSPCSSRVK 81
           FHPSNG+Y+ SPCSSR K
Sbjct: 184 FHPSNGSYIHSPCSSRAK 201

[Close]

BLAST of MELO3C016214.2 vs. TrEMBL
Match: tr|W9SWL3|W9SWL3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021339 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.2e-20
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1   MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 60
           ++  Y V S+SIPLNPE+M+ VD  LK D   F L G++R +WRVGLLGSVK+ C+L+C+
Sbjct: 121 LQLPYKVLSSSIPLNPEEMQQVDMALKDDRITFDLKGHSRARWRVGLLGSVKFWCNLNCQ 180

Query: 61  LKFHPSNGTYLRSPCSSRVK 81
           LKFHP  G+Y+ SPC+SR K
Sbjct: 181 LKFHPLTGSYMSSPCTSRAK 200

[Close]

BLAST of MELO3C016214.2 vs. TrEMBL
Match: tr|A0A061G7J6|A0A061G7J6_THECC (Root, flower, group 2, putative OS=Theobroma cacao OX=3641 GN=TCM_016713 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-19
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 3   FHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCELK 62
           FHY V S+ IPL+PEQ + VD  LK DL  F L G T+ +WRVGLLGS+K+ECHL C+L 
Sbjct: 128 FHYVVQSSPIPLDPEQADDVDAALKKDLITFDLKGKTKARWRVGLLGSIKFECHLSCQLH 187

Query: 63  FHPSNGTYLRSPCSSRVK 81
           FH  NGT++ S C+S+ K
Sbjct: 188 FHVFNGTFIPSRCTSKAK 205

The following BLAST results are available for this feature:

BLAST of MELO3C016214.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451870.1	8.6e-41	100.00	PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo]	[more]
XP_004150550.1	2.0e-34	90.00	PREDICTED: uncharacterized protein LOC101214190 [Cucumis sativus] >KGN53464.1 hy...	[more]
XP_022136394.1	3.1e-30	79.75	uncharacterized protein LOC111008115 [Momordica charantia]	[more]
XP_022985334.1	1.5e-29	77.50	uncharacterized protein LOC111483375 [Cucurbita maxima]	[more]
XP_022931289.1	6.4e-28	78.95	uncharacterized protein LOC111437517 [Cucurbita moschata] >XP_023552821.1 unchar...	[more]

BLAST of MELO3C016214.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45320.1	1.0e-19	53.95	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of MELO3C016214.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C016214.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BSH0\|A0A1S3BSH0_CUCME	5.7e-41	100.00	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103493029 PE=4 SV=1	[more]
tr\|A0A0A0KX91\|A0A0A0KX91_CUCSA	1.4e-34	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1	[more]
tr\|M5WBE7\|M5WBE7_PRUPE	2.2e-21	61.54	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G014700 PE=4 SV=1	[more]
tr\|W9SWL3\|W9SWL3_9ROSA	7.2e-20	57.50	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021339 PE=4 SV=1	[more]
tr\|A0A061G7J6\|A0A061G7J6_THECC	2.1e-19	57.69	Root, flower, group 2, putative OS=Theobroma cacao OX=3641 GN=TCM_016713 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016214.2.1	MELO3C016214.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 2..78
None	No IPR available	PANTHER	PTHR31852:SF9	SUBFAMILY NOT NAMED	coord: 2..78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016214.2	Csa4G056550	Cucumber (Chinese Long) v2	cumedB284
MELO3C016214.2	CSPI04G06890	Wild cucumber (PI 183967)	cpimedB289
MELO3C016214.2	CmaCh16G005090	Cucurbita maxima (Rimu)	cmamedB356
MELO3C016214.2	CmoCh16G005550	Cucurbita moschata (Rifu)	cmomedB344
MELO3C016214.2	CmoCh04G006390	Cucurbita moschata (Rifu)	cmomedB780
MELO3C016214.2	Lsi07G007730	Bottle gourd (USVL1VR-Ls)	lsimedB467
MELO3C016214.2	Cp4.1LG01g01130	Cucurbita pepo (Zucchini)	cpemedB488
MELO3C016214.2	Cp4.1LG14g02850	Cucurbita pepo (Zucchini)	cpemedB245
MELO3C016214.2	CsGy4G006830	Cucumber (Gy14) v2	cgybmedB254
MELO3C016214.2	Cla005461	Watermelon (97103) v1	medwmB503
MELO3C016214.2	ClCG07G011150	Watermelon (Charleston Gray)	medwcgB490
MELO3C016214.2	Cla97C07G137880	Watermelon (97103) v2	medwmbB493
MELO3C016214.2	Bhi01G002353	Wax gourd	medwgoB577
MELO3C016214.2	Carg11423	Silver-seed gourd	carmedB0662
MELO3C016214.2	Carg13148	Silver-seed gourd	carmedB0047
MELO3C016214.2	CsaV3_4G007100	Cucumber (Chinese Long) v3	cucmedB292

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016214.2	Cucumber (Gy14) v1	cgymedB318
MELO3C016214.2	Cucumber (Gy14) v1	cgymedB386
MELO3C016214.2	Cucurbita maxima (Rimu)	cmamedB351
MELO3C016214.2	Cucurbita maxima (Rimu)	cmamedB783
MELO3C016214.2	Cucurbita moschata (Rifu)	cmomedB337
MELO3C016214.2	Cucurbita pepo (Zucchini)	cpemedB239
MELO3C016214.2	Bottle gourd (USVL1VR-Ls)	lsimedB472
MELO3C016214.2	Watermelon (Charleston Gray)	medwcgB481
MELO3C016214.2	Watermelon (97103) v1	medwmB494
MELO3C016214.2	Silver-seed gourd	carmedB0043
MELO3C016214.2	Silver-seed gourd	carmedB0664
MELO3C016214.2	Watermelon (97103) v2	medwmbB484