MELO3C016141 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016141
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Location	chr7 : 19636743 .. 19637729 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGTGTTTTTTGGCCAAGAGATATTGTTCATATTATACCGGTAAAGTCCCAATAATGTTATTGGATTTGAAACCTTCCATCCTCATTGCCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATGATTGGAGGTGGTTACAAAAAGAAAGATGCACATGGATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATGTTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACAAAGCATTTTTCCTGACACACGAGGTTCTCAAAGAGATGAACAAAGCATTTTTCCTGACGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACATCTTCGTATTCTACCGGACACACAAGGTTCTCGAAGAAGTGAACGAATCGACCGACAAGATAATACTCGAGAGAGCAGAATCAAGGACGGTGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGAGGAGAAGATATTGATGGTGGCTATGTCGATAATTGTGGCGATGGTACCGATGGCAGTGGCGTCTATGGTGGTGGTGGCGGCAGCAACAGCTGTGGCAATGGCTCTCAACTTTGAGGTTTGATGTAAAGTAAAACAAGGTGTGCAACACCACAAAACTTTTCCATTGATATTCCTTTTTGTTGCTTAGTAATTCCTCTTCCCATTGTTCTTTCCTTTTCCAAAACCTTTCATCTTTTAGAAGGAACCTATAACTTTTGCTTTTATCACCACCTTATTGGCCACCTTATTTTCAATATTTCAGTGATTATGTAATAAGTTTCAAATCACAAGGTTTATTGAGTATAACTCAATTCGTTAACATATTATTCTAAGAGATTAAAAGATTTTAATCCCT

mRNA sequence

AAGAGTGTTTTTTGGCCAAGAGATATTGTTCATATTATACCGGTAAAGTCCCAATAATGTTATTGGATTTGAAACCTTCCATCCTCATTGCCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATGATTGGAGGTGGTTACAAAAAGAAAGATGCACATGGATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATGTTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACAAAGCATTTTTCCTGACACACGAGGTTCTCAAAGAGATGAACAAAGCATTTTTCCTGACGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACATCTTCGTATTCTACCGGACACACAAGGTTCTCGAAGAAGTGAACGAATCGACCGACAAGATAATACTCGAGAGAGCAGAATCAAGGACGGTGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGAGGAGAAGATATTGATGGTGGCTATGTCGATAATTGTGGCGATGGTACCGATGGCAGTGGCGTCTATGGTGGTGGTGGCGGCAGCAACAGCTGTGGCAATGGCTCTCAACTTTGAGGTTTGATGTAAAGTAAAACAAGGTGTGCAACACCACAAAACTTTTCCATTGATATTCCTTTTTGTTGCTTAGTAATTCCTCTTCCCATTGTTCTTTCCTTTTCCAAAACCTTTCATCTTTTAGAAGGAACCTATAACTTTTGCTTTTATCACCACCTTATTGGCCACCTTATTTTCAATATTTCAGTGATTATGTAATAAGTTTCAAATCACAAGGTTTATTGAGTATAACTCAATTCGTTAACATATTATTCTAAGAGATTAAAAGATTTTAATCCCT

Coding sequence (CDS)

ATGTTATTGGATTTGAAACCTTCCATCCTCATTGCCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATGATTGGAGGTGGTTACAAAAAGAAAGATGCACATGGATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATGTTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACAAAGCATTTTTCCTGACACACGAGGTTCTCAAAGAGATGAACAAAGCATTTTTCCTGACGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACATCTTCGTATTCTACCGGACACACAAGGTTCTCGAAGAAGTGAACGAATCGACCGACAAGATAATACTCGAGAGAGCAGAATCAAGGACGGTGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGAGGAGAAGATATTGATGGTGGCTATGTCGATAATTGTGGCGATGGTACCGATGGCAGTGGCGTCTATGGTGGTGGTGGCGGCAGCAACAGCTGTGGCAATGGCTCTCAACTTTGA

Protein sequence

MLLDLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPDARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGNGSQL*

Homology

[Close]

BLAST of MELO3C016141 vs. TrEMBL
Match: A0A0A0L0B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 2.7e-100
Identity = 193/216 (89.35%), Postives = 199/216 (92.13%), Query Frame = 1


Query: 1   MLLDLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRPLQTYR 60
           MLLDLKPSILI IICTSLVVVAAILCCFC+IG GY+KKDA+ LPTPSVSIGRSRPLQTYR
Sbjct: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR 60

Query: 61  DVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPDARGFQTSEQSIFPDTRSSRR 120
           D+EFGQGIRTYRQDSTPRSE+SI  DTRGSQR EQSIF DARGFQTSEQSIFPDTRSSRR
Sbjct: 61  DIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSSRR 120

Query: 121 NEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGG 180
           NE   ILPDTQ SRRSE+IDRQD TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGG
Sbjct: 121 NER-SILPDTQSSRRSEQIDRQD-TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGG 180

Query: 181 EDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGNGSQL 217
           EDIDG YVDNC DGTDG GVYGGG GSNS GNGSQL
Sbjct: 181 EDIDGDYVDNCDDGTDGGGVYGGGVGSNSYGNGSQL 214

[Close]

BLAST of MELO3C016141 vs. NCBI nr
Match: gi|700198393|gb|KGN53551.1| (hypothetical protein Csa_4G081290 [Cucumis sativus])

HSP 1 Score: 372.9 bits (956), Expect = 3.9e-100
Identity = 193/216 (89.35%), Postives = 199/216 (92.13%), Query Frame = 1


Query: 1   MLLDLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRPLQTYR 60
           MLLDLKPSILI IICTSLVVVAAILCCFC+IG GY+KKDA+ LPTPSVSIGRSRPLQTYR
Sbjct: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR 60

Query: 61  DVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPDARGFQTSEQSIFPDTRSSRR 120
           D+EFGQGIRTYRQDSTPRSE+SI  DTRGSQR EQSIF DARGFQTSEQSIFPDTRSSRR
Sbjct: 61  DIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSSRR 120

Query: 121 NEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGG 180
           NE   ILPDTQ SRRSE+IDRQD TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGG
Sbjct: 121 NER-SILPDTQSSRRSEQIDRQD-TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGG 180

Query: 181 EDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGNGSQL 217
           EDIDG YVDNC DGTDG GVYGGG GSNS GNGSQL
Sbjct: 181 EDIDGDYVDNCDDGTDGGGVYGGGVGSNSYGNGSQL 214

The following BLAST results are available for this feature:

BLAST of MELO3C016141 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0B2_CUCSA	2.7e-100	89.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1	[more]

BLAST of MELO3C016141 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198393\|gb\|KGN53551.1\|	3.9e-100	89.35	hypothetical protein Csa_4G081290 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016141T1	MELO3C016141T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016141	Csa4G081290	Cucumber (Chinese Long) v2	cumeB314
MELO3C016141	Cla005392	Watermelon (97103) v1	mewmB508
MELO3C016141	ClCG07G010400	Watermelon (Charleston Gray)	mewcgB485
MELO3C016141	Cla97C07G137100	Watermelon (97103) v2	mewmbB491
MELO3C016141	CSPI04G07700	Wild cucumber (PI 183967)	cpimeB312
MELO3C016141	CmaCh04G006520	Cucurbita maxima (Rimu)	cmameB701
MELO3C016141	Lsi07G008640	Bottle gourd (USVL1VR-Ls)	lsimeB455
MELO3C016141	Cp4.1LG01g00790	Cucurbita pepo (Zucchini)	cpemeB423
MELO3C016141	CsGy4G007600	Cucumber (Gy14) v2	cgybmeB271
MELO3C016141	CsaV3_4G007930	Cucumber (Chinese Long) v3	cucmeB317

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016141	Cucumber (Chinese Long) v3	cucmeB306
MELO3C016141	Wax gourd	mewgoB577
MELO3C016141	Cucumber (Gy14) v1	cgymeB455
MELO3C016141	Cucurbita maxima (Rimu)	cmameB301
MELO3C016141	Cucurbita moschata (Rifu)	cmomeB294
MELO3C016141	Cucurbita moschata (Rifu)	cmomeB693
MELO3C016141	Wild cucumber (PI 183967)	cpimeB300
MELO3C016141	Cucumber (Chinese Long) v2	cumeB304
MELO3C016141	Cucurbita pepo (Zucchini)	cpemeB196
MELO3C016141	Cucumber (Gy14) v2	cgybmeB261
MELO3C016141	Silver-seed gourd	carmeB0042
MELO3C016141	Silver-seed gourd	carmeB0652