Cp4.1LG01g00790 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g00790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 3403243 .. 3403887 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATATCAAACCCTCCATCATAATTCTCATAATTTGCGCTTCTTTACTCGCCGCCGTTGTGATTTTATGTTGTTTATGTATAATCAGAGGCCGTAGAAGGAAAGACTCAACACGGCCTACTCCAAGTGGATCTATTAGTTCAAGGCGGCCGCCGCCGCCGCCATGGCCCCGACAATCCTACTATGATGTTGAGTCCGGACAGGGCATTCGAGCATACAGACAGGACACTCTAAGAAGCGAACAAAGCGTTCCATCAGACAGACATGGCGCTCAAAGAAGCGAACGATACAGTTTTCGAACAGACAGATCACGAAGTAGTCAAAGCAGCGAACCAAGCGTTGGAAGAGACAAACAAAGTGGATTCAAGGACGGCGGGATGGCCATCTTGGCTGGGGCTGGTGCTGCTATGGCTGCTGCAGCTGCGGCCATTGGTTTAAGTAGTGGAGGAGGACAAGAATATGGTGGCAATGGTGATGGTTATTGGGGAGATGGTAGTCGTACTGACGGCTATGGCGATAGTTGGGGCAATGGCAATCGGGACGGTGGAAGTGGCGGTGGTGGCGTTTGTGGCGCTGGCTGTGGAAGTGTCGGTGGTAGCGCTTGTGGCAGTACCGGTGGCAATAACTACTCTCAACACTAA

mRNA sequence

ATGTTTGATATCAAACCCTCCATCATAATTCTCATAATTTGCGCTTCTTTACTCGCCGCCGTTGTGATTTTATGTTGTTTATGTATAATCAGAGGCCGTAGAAGGAAAGACTCAACACGGCCTACTCCAAGTGGATCTATTAGTTCAAGGCGGCCGCCGCCGCCGCCATGGCCCCGACAATCCTACTATGATGTTGAGTCCGGACAGGGCATTCGAGCATACAGACAGGACACTCTAAGAAGCGAACAAAGCGTTCCATCAGACAGACATGGCGCTCAAAGAAGCGAACGATACAGTTTTCGAACAGACAGATCACGAAGTAGTCAAAGCAGCGAACCAAGCGTTGGAAGAGACAAACAAAGTGGATTCAAGGACGGCGGGATGGCCATCTTGGCTGGGGCTGGTGCTGCTATGGCTGCTGCAGCTGCGGCCATTGGTTTAAGTAGTGGAGGAGGACAAGAATATGGTGGCAATGGTGATGGTTATTGGGGAGATGGTAGTCGTACTGACGGCTATGGCGATAGTTGGGGCAATGGCAATCGGGACGGTGGAAGTGGCGGTGGTGGCGTTTGTGGCGCTGGCTGTGGAAGTGTCGGTGGTAGCGCTTGTGGCAGTACCGGTGGCAATAACTACTCTCAACACTAA

Coding sequence (CDS)

ATGTTTGATATCAAACCCTCCATCATAATTCTCATAATTTGCGCTTCTTTACTCGCCGCCGTTGTGATTTTATGTTGTTTATGTATAATCAGAGGCCGTAGAAGGAAAGACTCAACACGGCCTACTCCAAGTGGATCTATTAGTTCAAGGCGGCCGCCGCCGCCGCCATGGCCCCGACAATCCTACTATGATGTTGAGTCCGGACAGGGCATTCGAGCATACAGACAGGACACTCTAAGAAGCGAACAAAGCGTTCCATCAGACAGACATGGCGCTCAAAGAAGCGAACGATACAGTTTTCGAACAGACAGATCACGAAGTAGTCAAAGCAGCGAACCAAGCGTTGGAAGAGACAAACAAAGTGGATTCAAGGACGGCGGGATGGCCATCTTGGCTGGGGCTGGTGCTGCTATGGCTGCTGCAGCTGCGGCCATTGGTTTAAGTAGTGGAGGAGGACAAGAATATGGTGGCAATGGTGATGGTTATTGGGGAGATGGTAGTCGTACTGACGGCTATGGCGATAGTTGGGGCAATGGCAATCGGGACGGTGGAAGTGGCGGTGGTGGCGTTTGTGGCGCTGGCTGTGGAAGTGTCGGTGGTAGCGCTTGTGGCAGTACCGGTGGCAATAACTACTCTCAACACTAA

Protein sequence

MFDIKPSIIILIICASLLAAVVILCCLCIIRGRRRKDSTRPTPSGSISSRRPPPPPWPRQSYYDVESGQGIRAYRQDTLRSEQSVPSDRHGAQRSERYSFRTDRSRSSQSSEPSVGRDKQSGFKDGGMAILAGAGAAMAAAAAAIGLSSGGGQEYGGNGDGYWGDGSRTDGYGDSWGNGNRDGGSGGGGVCGAGCGSVGGSACGSTGGNNYSQH
Homology
[Close]
BLAST of Cp4.1LG01g00790 vs. TrEMBL
Match: A0A0A0L0B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-19
Identity = 101/228 (44.30%), Postives = 125/228 (54.82%), Query Frame = 1 

Query: 1   MFDIKPSIIILIICASLLAAVVILCCLCIIR-GRRRKDSTR-PTPSGSISSRRPPPPPWP 60
           + D+KPSI+I+IIC SL+    ILCC CII  G R+KD+ + PTPS SI   R      P
Sbjct: 2   LLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSR------P 61

Query: 61  RQSYYDVESGQGIRAYRQD-TLRSEQSVPSDRHGAQRSERYSFRTDR------------S 120
            Q+Y D+E GQGIR YRQD T RSE+S+ SD  G+QR E+  F   R            +
Sbjct: 62  LQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDT 121

Query: 121 RSSQSSEPSVGRDKQSG---------------FKDGGMAILAGAGAAMAAAAAAIGLSS- 180
           RSS+ +E S+  D QS                 KDGGMAILAGAGAA+A AA  +GLSS 
Sbjct: 122 RSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSY 181

Query: 181 GGGQEYGGNGDGYWGDGSRTDGYGDSWGNGNRDGGSGGGGVCGAGCGS 198
            GG++  G+             Y D     N D G+ GGGV G G GS
Sbjct: 182 QGGEDIDGD-------------YVD-----NCDDGTDGGGVYGGGVGS 205

[Close]
BLAST of Cp4.1LG01g00790 vs. NCBI nr
Match: gi|700198393|gb|KGN53551.1| (hypothetical protein Csa_4G081290 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 2.6e-19
Identity = 101/228 (44.30%), Postives = 125/228 (54.82%), Query Frame = 1 

Query: 1   MFDIKPSIIILIICASLLAAVVILCCLCIIR-GRRRKDSTR-PTPSGSISSRRPPPPPWP 60
           + D+KPSI+I+IIC SL+    ILCC CII  G R+KD+ + PTPS SI   R      P
Sbjct: 2   LLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSR------P 61

Query: 61  RQSYYDVESGQGIRAYRQD-TLRSEQSVPSDRHGAQRSERYSFRTDR------------S 120
            Q+Y D+E GQGIR YRQD T RSE+S+ SD  G+QR E+  F   R            +
Sbjct: 62  LQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDT 121

Query: 121 RSSQSSEPSVGRDKQSG---------------FKDGGMAILAGAGAAMAAAAAAIGLSS- 180
           RSS+ +E S+  D QS                 KDGGMAILAGAGAA+A AA  +GLSS 
Sbjct: 122 RSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSY 181

Query: 181 GGGQEYGGNGDGYWGDGSRTDGYGDSWGNGNRDGGSGGGGVCGAGCGS 198
            GG++  G+             Y D     N D G+ GGGV G G GS
Sbjct: 182 QGGEDIDGD-------------YVD-----NCDDGTDGGGVYGGGVGS 205

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g00790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g00790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0B2_CUCSA1.8e-1944.30Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1[more]
BLAST of Cp4.1LG01g00790 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g00790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198393|gb|KGN53551.1|2.6e-1944.30hypothetical protein Csa_4G081290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g00790.1Cp4.1LG01g00790.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g00790CmaCh04G006520Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g00790Csa4G081290Cucumber (Chinese Long) v2cpecuB399
Cp4.1LG01g00790MELO3C016141Melon (DHL92) v3.5.1cpemeB423
Cp4.1LG01g00790CSPI04G07700Wild cucumber (PI 183967)cpecpiB396
Cp4.1LG01g00790CsaV3_4G007930Cucumber (Chinese Long) v3cpecucB0496
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g00790Cucurbita pepo (Zucchini)cpecpeB236
Cp4.1LG01g00790Cucumber (Gy14) v1cgycpeB0718
Cp4.1LG01g00790Cucumber (Gy14) v1cgycpeB0719
Cp4.1LG01g00790Cucurbita maxima (Rimu)cmacpeB353
Cp4.1LG01g00790Cucurbita moschata (Rifu)cmocpeB315
Cp4.1LG01g00790Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g00790Bottle gourd (USVL1VR-Ls)cpelsiB372
Cp4.1LG01g00790Bottle gourd (USVL1VR-Ls)cpelsiB381
Cp4.1LG01g00790Watermelon (Charleston Gray)cpewcgB411
Cp4.1LG01g00790Watermelon (97103) v1cpewmB419
Cp4.1LG01g00790Cucumber (Gy14) v2cgybcpeB501
Cp4.1LG01g00790Melon (DHL92) v3.6.1cpemedB491
Cp4.1LG01g00790Melon (DHL92) v3.6.1cpemedB495
Cp4.1LG01g00790Silver-seed gourdcarcpeB0061
Cp4.1LG01g00790Silver-seed gourdcarcpeB0929
Cp4.1LG01g00790Wax gourdcpewgoB0509