CmaCh04G006520 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G006520
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 3334904 .. 3335524 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATATCAAACCCTCCATCACAATTCTCATAATTTGCGCTTCTTTACTCGCCGCCGTTGTGATTTTATGTTGTTTATGTATAATCAGAGGCCGTAAAAGTAAAGACTCAACACGGCCTACTCCAAGTGGATCTATTAGTTCAAGGCGGCCGCCGCCGCCATGGCCCCGACAATCCTACTATGATGTTGAGCCCGGACAGGGCATTCGAGCATACAGACAGGACACTCTAAGAAGCGAACAAAGCGTTCCATCAGACAGACATGGCGCTCAAAGAAGCGAACAGTACAGTTTTCGAACAGACAGATCACGAAGTAGTCAAAGCAGCGAACCAAGCGTTGGAAGAGACAAACGAAGTGGATTCAAGGACGGCGGGATGGCCATCTTGGCTGGGGCTGGGGCTGCTATGGCTGCTGCAGCTGCGGCCCTTGGTTTAAGTAGTGGAGGAGGAGAAGAATATGGTGGCAATGGTGATGGTTATTGGGGAGATAGTAGTCGTACCGACGGCTATGGCGATAGTTGTGGCAATGGCAATCGGGACGGTGGAAGTGGCGGTGGTGGCGTTTGTGGCGCTGGCTGTGGAAGTGTCGGTGGTAGCGCTTGTGGCAGGTGGCAATAA

mRNA sequence

ATGTTTGATATCAAACCCTCCATCACAATTCTCATAATTTGCGCTTCTTTACTCGCCGCCGTTGTGATTTTATGTTGTTTATGTATAATCAGAGGCCGTAAAAGTAAAGACTCAACACGGCCTACTCCAAGTGGATCTATTAGTTCAAGGCGGCCGCCGCCGCCATGGCCCCGACAATCCTACTATGATGTTGAGCCCGGACAGGGCATTCGAGCATACAGACAGGACACTCTAAGAAGCGAACAAAGCGTTCCATCAGACAGACATGGCGCTCAAAGAAGCGAACAGTACAGTTTTCGAACAGACAGATCACGAAGTAGTCAAAGCAGCGAACCAAGCGTTGGAAGAGACAAACGAAGTGGATTCAAGGACGGCGGGATGGCCATCTTGGCTGGGGCTGGGGCTGCTATGGCTGCTGCAGCTGCGGCCCTTGGTTTAAGTAGTGGAGGAGGAGAAGAATATGGTGGCAATGGTGATGGTTATTGGGGAGATAGTAGTCGTACCGACGGCTATGGCGATAGTTGTGGCAATGGCAATCGGGACGGTGGAAGTGGCGGTGGTGGCGTTTGTGGCGCTGGCTGTGGAAGTGTCGGTGGTAGCGCTTGTGGCAGGTGGCAATAA

Coding sequence (CDS)

ATGTTTGATATCAAACCCTCCATCACAATTCTCATAATTTGCGCTTCTTTACTCGCCGCCGTTGTGATTTTATGTTGTTTATGTATAATCAGAGGCCGTAAAAGTAAAGACTCAACACGGCCTACTCCAAGTGGATCTATTAGTTCAAGGCGGCCGCCGCCGCCATGGCCCCGACAATCCTACTATGATGTTGAGCCCGGACAGGGCATTCGAGCATACAGACAGGACACTCTAAGAAGCGAACAAAGCGTTCCATCAGACAGACATGGCGCTCAAAGAAGCGAACAGTACAGTTTTCGAACAGACAGATCACGAAGTAGTCAAAGCAGCGAACCAAGCGTTGGAAGAGACAAACGAAGTGGATTCAAGGACGGCGGGATGGCCATCTTGGCTGGGGCTGGGGCTGCTATGGCTGCTGCAGCTGCGGCCCTTGGTTTAAGTAGTGGAGGAGGAGAAGAATATGGTGGCAATGGTGATGGTTATTGGGGAGATAGTAGTCGTACCGACGGCTATGGCGATAGTTGTGGCAATGGCAATCGGGACGGTGGAAGTGGCGGTGGTGGCGTTTGTGGCGCTGGCTGTGGAAGTGTCGGTGGTAGCGCTTGTGGCAGGTGGCAATAA

Protein sequence

MFDIKPSITILIICASLLAAVVILCCLCIIRGRKSKDSTRPTPSGSISSRRPPPPWPRQSYYDVEPGQGIRAYRQDTLRSEQSVPSDRHGAQRSEQYSFRTDRSRSSQSSEPSVGRDKRSGFKDGGMAILAGAGAAMAAAAAALGLSSGGGEEYGGNGDGYWGDSSRTDGYGDSCGNGNRDGGSGGGGVCGAGCGSVGGSACGRWQ
Homology
[Close]
BLAST of CmaCh04G006520 vs. TrEMBL
Match: A0A0A0L0B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-20
Identity = 102/227 (44.93%), Postives = 124/227 (54.63%), Query Frame = 1 

Query: 1   MFDIKPSITILIICASLLAAVVILCCLCIIR-GRKSKDSTR-PTPSGSISSRRPPPPWPR 60
           + D+KPSI I+IIC SL+    ILCC CII  G + KD+ + PTPS SI   RP      
Sbjct: 2   LLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRP-----L 61

Query: 61  QSYYDVEPGQGIRAYRQD-TLRSEQSVPSDRHGAQRSEQYSFRTDR------------SR 120
           Q+Y D+E GQGIR YRQD T RSE+S+ SD  G+QR EQ  F   R            +R
Sbjct: 62  QTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTR 121

Query: 121 SSQSSEPSVGRDKRSG---------------FKDGGMAILAGAGAAMAAAAAALGLSS-G 180
           SS+ +E S+  D +S                 KDGGMAILAGAGAA+A AA  LGLSS  
Sbjct: 122 SSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQ 181

Query: 181 GGEEYGGNGDGYWGDSSRTDGYGDSCGNGNRDGGSGGGGVCGAGCGS 197
           GGE+  G+             Y D+C     D G+ GGGV G G GS
Sbjct: 182 GGEDIDGD-------------YVDNC-----DDGTDGGGVYGGGVGS 205

[Close]
BLAST of CmaCh04G006520 vs. NCBI nr
Match: gi|700198393|gb|KGN53551.1| (hypothetical protein Csa_4G081290 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 2.9e-20
Identity = 102/227 (44.93%), Postives = 124/227 (54.63%), Query Frame = 1 

Query: 1   MFDIKPSITILIICASLLAAVVILCCLCIIR-GRKSKDSTR-PTPSGSISSRRPPPPWPR 60
           + D+KPSI I+IIC SL+    ILCC CII  G + KD+ + PTPS SI   RP      
Sbjct: 2   LLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRP-----L 61

Query: 61  QSYYDVEPGQGIRAYRQD-TLRSEQSVPSDRHGAQRSEQYSFRTDR------------SR 120
           Q+Y D+E GQGIR YRQD T RSE+S+ SD  G+QR EQ  F   R            +R
Sbjct: 62  QTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTR 121

Query: 121 SSQSSEPSVGRDKRSG---------------FKDGGMAILAGAGAAMAAAAAALGLSS-G 180
           SS+ +E S+  D +S                 KDGGMAILAGAGAA+A AA  LGLSS  
Sbjct: 122 SSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQ 181

Query: 181 GGEEYGGNGDGYWGDSSRTDGYGDSCGNGNRDGGSGGGGVCGAGCGS 197
           GGE+  G+             Y D+C     D G+ GGGV G G GS
Sbjct: 182 GGEDIDGD-------------YVDNC-----DDGTDGGGVYGGGVGS 205

The following BLAST results are available for this feature:
BLAST of CmaCh04G006520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G006520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0B2_CUCSA2.0e-2044.93Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1[more]
BLAST of CmaCh04G006520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G006520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198393|gb|KGN53551.1|2.9e-2044.93hypothetical protein Csa_4G081290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G006520.1CmaCh04G006520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G006520Csa4G081290Cucumber (Chinese Long) v2cmacuB708
CmaCh04G006520MELO3C016141Melon (DHL92) v3.5.1cmameB701
CmaCh04G006520CSPI04G07700Wild cucumber (PI 183967)cmacpiB714
CmaCh04G006520Cp4.1LG01g00790Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G006520CsaV3_4G007930Cucumber (Chinese Long) v3cmacucB0841
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G006520Watermelon (97103) v2cmawmbB782
CmaCh04G006520Wax gourdcmawgoB0847
CmaCh04G006520Cucurbita maxima (Rimu)cmacmaB353
CmaCh04G006520Cucumber (Gy14) v1cgycmaB0765
CmaCh04G006520Cucumber (Gy14) v1cgycmaB0766
CmaCh04G006520Cucurbita moschata (Rifu)cmacmoB703
CmaCh04G006520Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G006520Watermelon (Charleston Gray)cmawcgB675
CmaCh04G006520Watermelon (97103) v1cmawmB692
CmaCh04G006520Cucurbita pepo (Zucchini)cmacpeB717
CmaCh04G006520Bottle gourd (USVL1VR-Ls)cmalsiB695
CmaCh04G006520Bottle gourd (USVL1VR-Ls)cmalsiB702
CmaCh04G006520Cucumber (Gy14) v2cgybcmaB541
CmaCh04G006520Melon (DHL92) v3.6.1cmamedB790
CmaCh04G006520Silver-seed gourdcarcmaB0055
CmaCh04G006520Silver-seed gourdcarcmaB0927