CsaV3_4G007930 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G007930
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 5558259 .. 5559221 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGAGATATTGTACATATTATACTGCTAAAGTCCCAATAATGTTATTGGATTTGAAACCTTCCATCCTCATTGTCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATAATTGGATGTGGTTATAGAAAGAAAGATGCAAATCAATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATATTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACGAAGCATTTCTTCGGACACACGAGGTTCTCAAAGAGGTGAACAAAGCATTTTTACTGACGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACGTAGTATTCTACCGGACACACAAAGTTCTCGAAGAAGTGAACAAATCGACCGACAAGATACTCGAGAAAGCAGAATCAAGGACGGTGGGATGGCCATCTTAGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGGGGAGAAGATATCGATGGTGATTATGTCGATAACTGTGATGATGGTACTGATGGCGGTGGCGTCTATGGTGGTGGTGTTGGCAGCAACAGCTATGGCAATGGCTCTCAACTTTGAGGTTTCATGTAAAGCAAAACAAGGTGTGCAACACCACAAAACTCCTCTATTATTCCTTTTTGTTGCTTGGTACTTCTCTTCCCATTGTTCTTCTTTCCTTTTCCAAGGCCTTTCATCTTTTAGAAGGAACCGTATAACTTTTACTTTTATCACCACCTTATTGGTCACCTTATTTTCAATATTTCAGTGATTATGTAATAAGTTTCAAATCATAACGTTTATTGAGTATAACTCAATTTAACACATAATGTTCCAAGAGATTTAATCTCAGTTCTCA

mRNA sequence

AAGAGATATTGTACATATTATACTGCTAAAGTCCCAATAATGTTATTGGATTTGAAACCTTCCATCCTCATTGTCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATAATTGGATGTGGTTATAGAAAGAAAGATGCAAATCAATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATATTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACGAAGCATTTCTTCGGACACACGAGGTTCTCAAAGAGGTGAACAAAGCATTTTTACTGACGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACGTAGTATTCTACCGGACACACAAAGTTCTCGAAGAAGTGAACAAATCGACCGACAAGATACTCGAGAAAGCAGAATCAAGGACGGTGGGATGGCCATCTTAGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGGGGAGAAGATATCGATGGTGATTATGTCGATAACTGTGATGATGGTACTGATGGCGGTGGCGTCTATGGTGGTGGTGTTGGCAGCAACAGCTATGGCAATGGCTCTCAACTTTGA

Coding sequence (CDS)

AAGAGATATTGTACATATTATACTGCTAAAGTCCCAATAATGTTATTGGATTTGAAACCTTCCATCCTCATTGTCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATAATTGGATGTGGTTATAGAAAGAAAGATGCAAATCAATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATATTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACGAAGCATTTCTTCGGACACACGAGGTTCTCAAAGAGGTGAACAAAGCATTTTTACTGACGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACGTAGTATTCTACCGGACACACAAAGTTCTCGAAGAAGTGAACAAATCGACCGACAAGATACTCGAGAAAGCAGAATCAAGGACGGTGGGATGGCCATCTTAGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGGGGAGAAGATATCGATGGTGATTATGTCGATAACTGTGATGATGGTACTGATGGCGGTGGCGTCTATGGTGGTGGTGTTGGCAGCAACAGCTATGGCAATGGCTCTCAACTTTGA

Protein sequence

KRYCTYYTAKVPIMLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVGSNSYGNGSQL
Homology
[Close]
BLAST of CsaV3_4G007930 vs. NCBI nr
Match: KGN53551.1 (hypothetical protein Csa_4G081290 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 3.3e-61
Identity = 210/214 (98.13%), Postives = 210/214 (98.13%), Query Frame = 0 

Query: 14  MLLDLKPSILIVXXXXXXXXXXXXXXCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR 73
           MLLDLKPSILIV   XXXXXXXXXXXCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR
Sbjct: 1   MLLDLKPSILIVIICXXXXXXXXXXXCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR 60

Query: 74  DIEFGQGIRTYRQDSTPRSERSISSDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 133
           DIEFGQGIRTYRQDSTPRSERSISSDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DIEFGQGIRTYRQDSTPRSERSISSDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 134 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGGMAILAGAGAAIATAATVLGLSSYQGGED 193
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGGMAILAGAGAAIATAATVLGLSSYQGGED
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGGMAILAGAGAAIATAATVLGLSSYQGGED 180

Query: 194 IDGDYVDNCDDGTDGGGVYGXXVGSNSYGNGSQL 228
           IDGDYVDNCDDGTDGGGVYGX VGSNSYGNGSQL
Sbjct: 181 IDGDYVDNCDDGTDGGGVYGXGVGSNSYGNGSQL 214

[Close]
BLAST of CsaV3_4G007930 vs. TrEMBL
Match: tr|A0A0A0L0B2|A0A0A0L0B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.2e-61
Identity = 210/214 (98.13%), Postives = 210/214 (98.13%), Query Frame = 0 

Query: 14  MLLDLKPSILIVXXXXXXXXXXXXXXCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR 73
           MLLDLKPSILIV   XXXXXXXXXXXCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR
Sbjct: 1   MLLDLKPSILIVIICXXXXXXXXXXXCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR 60

Query: 74  DIEFGQGIRTYRQDSTPRSERSISSDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 133
           DIEFGQGIRTYRQDSTPRSERSISSDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DIEFGQGIRTYRQDSTPRSERSISSDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 134 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGGMAILAGAGAAIATAATVLGLSSYQGGED 193
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGGMAILAGAGAAIATAATVLGLSSYQGGED
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGGMAILAGAGAAIATAATVLGLSSYQGGED 180

Query: 194 IDGDYVDNCDDGTDGGGVYGXXVGSNSYGNGSQL 228
           IDGDYVDNCDDGTDGGGVYGX VGSNSYGNGSQL
Sbjct: 181 IDGDYVDNCDDGTDGGGVYGXGVGSNSYGNGSQL 214

The following BLAST results are available for this feature:
BLAST of CsaV3_4G007930 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53551.13.3e-6198.13hypothetical protein Csa_4G081290 [Cucumis sativus][more]
BLAST of CsaV3_4G007930 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0B2|A0A0A0L0B2_CUCSA2.2e-6198.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081290 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G007930.1CsaV3_4G007930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..227

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G007930CSPI04G07700Wild cucumber (PI 183967)cpicucB213
CsaV3_4G007930CmaCh04G006520Cucurbita maxima (Rimu)cmacucB0841
CsaV3_4G007930Cp4.1LG01g00790Cucurbita pepo (Zucchini)cpecucB0496
CsaV3_4G007930CsGy4G007600Cucumber (Gy14) v2cgybcucB171
CsaV3_4G007930Cla005392Watermelon (97103) v1cucwmB323
CsaV3_4G007930MELO3C016141Melon (DHL92) v3.5.1cucmeB317
CsaV3_4G007930ClCG07G010400Watermelon (Charleston Gray)cucwcgB343
CsaV3_4G007930Lsi07G008640Bottle gourd (USVL1VR-Ls)cuclsiB323
CsaV3_4G007930MELO3C016141.2Melon (DHL92) v3.6.1cucmedB309
CsaV3_4G007930Cla97C07G137100Watermelon (97103) v2cucwmbB329
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G007930Silver-seed gourdcarcucB0052
CsaV3_4G007930Silver-seed gourdcarcucB0688
CsaV3_4G007930Silver-seed gourdcarcucB0689
CsaV3_4G007930Cucumber (Gy14) v1cgycucB418
CsaV3_4G007930Cucurbita maxima (Rimu)cmacucB0391
CsaV3_4G007930Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G007930Cucurbita moschata (Rifu)cmocucB0387
CsaV3_4G007930Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G007930Cucurbita moschata (Rifu)cmocucB0827
CsaV3_4G007930Cucurbita pepo (Zucchini)cpecucB0265
CsaV3_4G007930Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G007930Bottle gourd (USVL1VR-Ls)cuclsiB333
CsaV3_4G007930Melon (DHL92) v3.5.1cucmeB306
CsaV3_4G007930Melon (DHL92) v3.6.1cucmedB298
CsaV3_4G007930Watermelon (Charleston Gray)cucwcgB339
CsaV3_4G007930Watermelon (97103) v1cucwmB321
CsaV3_4G007930Watermelon (97103) v2cucwmbB327
CsaV3_4G007930Wax gourdcucwgoB370
CsaV3_4G007930Wax gourdcucwgoB388