ClCG07G010400 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G010400
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr07 : 26109959 .. 26110483 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATTGGATAAACCTTCCATCCTCATTTTCATAATTTGCACTTGTGTAATAGTTGTTGTTGTTATTTTATGTTGCTTTTGTATAATTGGCCGAGGTGGTTATAAAAAGAAACAAACATCACATGAATTACCAACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTATGGCCTCCTCAAACGTACCATGATGTTGAATTTGGACAAGGTTTTCGAACCTACAGACAAGACATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCGAAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCCTTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGTGGGAATCGCTGCCAAAACTGA

mRNA sequence

ATGTTATTGGATAAACCTTCCATCCTCATTTTCATAATTTGCACTTGTGTAATAGTTGTTGTTGTTATTTTATGTTGCTTTTGTATAATTGGCCGAGGTGGTTATAAAAAGAAACAAACATCACATGAATTACCAACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTATGGCCTCCTCAAACGTACCATGATGTTGAATTTGGACAAGGTTTTCGAACCTACAGACAAGACATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCGAAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCCTTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGTGGGAATCGCTGCCAAAACTGA

Coding sequence (CDS)

ATGTTATTGGATAAACCTTCCATCCTCATTTTCATAATTTGCACTTGTGTAATAGTTGTTGTTGTTATTTTATGTTGCTTTTGTATAATTGGCCGAGGTGGTTATAAAAAGAAACAAACATCACATGAATTACCAACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTATGGCCTCCTCAAACGTACCATGATGTTGAATTTGGACAAGGTTTTCGAACCTACAGACAAGACATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCGAAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCCTTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGTGGGAATCGCTGCCAAAACTGA

Protein sequence

MLLDKPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGGGCGNRCQN
Homology
[Close]
BLAST of ClCG07G010400 vs. TrEMBL
Match: A0A0A0L0B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.2e-52
Identity = 128/209 (61.24%), Postives = 138/209 (66.03%), Query Frame = 1 

Query: 1   MLLD-KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWP 60
           MLLD KPSILI IICT ++VV  ILCCFCIIG G Y+KK  +++LPTPSVSIGRSRPL  
Sbjct: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCG-YRKKD-ANQLPTPSVSIGRSRPL-- 60

Query: 61  PQTYHDVEFGQGFRTYRQDM--------------SQRSEQ-------------------- 120
            QTY D+EFGQG RTYRQD               SQR EQ                    
Sbjct: 61  -QTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDT 120

Query: 121 --------SVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSD 167
                   S+ PDT+ SRRSE+ DRQDTRES IKDGGMAILAGAGAAIATAA VLGLSS 
Sbjct: 121 RSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSY 180

[Close]
BLAST of ClCG07G010400 vs. NCBI nr
Match: gi|700198393|gb|KGN53551.1| (hypothetical protein Csa_4G081290 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 3.2e-52
Identity = 128/209 (61.24%), Postives = 138/209 (66.03%), Query Frame = 1 

Query: 1   MLLD-KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWP 60
           MLLD KPSILI IICT ++VV  ILCCFCIIG G Y+KK  +++LPTPSVSIGRSRPL  
Sbjct: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCG-YRKKD-ANQLPTPSVSIGRSRPL-- 60

Query: 61  PQTYHDVEFGQGFRTYRQDM--------------SQRSEQ-------------------- 120
            QTY D+EFGQG RTYRQD               SQR EQ                    
Sbjct: 61  -QTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDT 120

Query: 121 --------SVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSD 167
                   S+ PDT+ SRRSE+ DRQDTRES IKDGGMAILAGAGAAIATAA VLGLSS 
Sbjct: 121 RSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSY 180

[Close]
BLAST of ClCG07G010400 vs. NCBI nr
Match: gi|1009162364|ref|XP_015899396.1| (PREDICTED: loricrin-like [Ziziphus jujuba])

HSP 1 Score: 62.4 bits (150), Expect = 9.1e-07
Identity = 54/173 (31.21%), Postives = 76/173 (43.93%), Query Frame = 1 

Query: 5   KPSILIFIICTCVIVVVVILCCFC-IIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTY 64
           K   ++ + C      ++IL C C IIGR   KKKQT H +   +V+         P T 
Sbjct: 2   KAGPIVILACISTFAALMILRCLCEIIGRA--KKKQTKHHVAKQTVAA--------PTT- 61

Query: 65  HDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGA 124
                    +   QD  +R  +    D   + +   TD+ +      KDGGM ILAG GA
Sbjct: 62  ---------QLAGQDDVERGREGT--DQTANAKETSTDQNN------KDGGMVILAGGGA 121

Query: 125 AIA-TAAAVLGLSSDQGGEDIDGGYVDT---RVDGTDADGVYG---GGGGGCG 170
           A+  + ++  G     GG    GGY++    R  G    G +G   GGGGGCG
Sbjct: 122 AVVPSKSSAGGGGGGGGGSTCSGGYLEPHGGRGGGCGGGGGFGGGCGGGGGCG 146

The following BLAST results are available for this feature:
BLAST of ClCG07G010400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0B2_CUCSA2.2e-5261.24Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1[more]
BLAST of ClCG07G010400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198393|gb|KGN53551.1|3.2e-5261.24hypothetical protein Csa_4G081290 [Cucumis sativus][more]
gi|1009162364|ref|XP_015899396.1|9.1e-0731.21PREDICTED: loricrin-like [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G010400.1ClCG07G010400.1mRNA