ClCG07G010400.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG07G010400.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr07 : 26109959 .. 26110483 (-)
Sequence length	525

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTGGATAAACCTTCCATCCTCATTTTCATAATTTGCACTTGTGTAATAGTTGTTGTTGTTATTTTATGTTGCTTTTGTATAATTGGCCGAGGTGGTTATAAAAAGAAACAAACATCACATGAATTACCAACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTATGGCCTCCTCAAACGTACCATGATGTTGAATTTGGACAAGGTTTTCGAACCTACAGACAAGACATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCGAAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCCTTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGTGGGAATCGCTGCCAAAACTGA

mRNA sequence

ATGTTATTGGATAAACCTTCCATCCTCATTTTCATAATTTGCACTTGTGTAATAGTTGTTGTTGTTATTTTATGTTGCTTTTGTATAATTGGCCGAGGTGGTTATAAAAAGAAACAAACATCACATGAATTACCAACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTATGGCCTCCTCAAACGTACCATGATGTTGAATTTGGACAAGGTTTTCGAACCTACAGACAAGACATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCGAAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCCTTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGTGGGAATCGCTGCCAAAACTGA

Coding sequence (CDS)

ATGTTATTGGATAAACCTTCCATCCTCATTTTCATAATTTGCACTTGTGTAATAGTTGTTGTTGTTATTTTATGTTGCTTTTGTATAATTGGCCGAGGTGGTTATAAAAAGAAACAAACATCACATGAATTACCAACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTATGGCCTCCTCAAACGTACCATGATGTTGAATTTGGACAAGGTTTTCGAACCTACAGACAAGACATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCGAAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCCTTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGTGGGAATCGCTGCCAAAACTGA

Protein sequence

MLLDKPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGGGCGNRCQN

Homology

[Close]

BLAST of ClCG07G010400.1 vs. TrEMBL
Match: A0A0A0L0B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.2e-52
Identity = 128/209 (61.24%), Postives = 138/209 (66.03%), Query Frame = 1


Query: 1   MLLD-KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWP 60
           MLLD KPSILI IICT ++VV  ILCCFCIIG G Y+KK  +++LPTPSVSIGRSRPL  
Sbjct: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCG-YRKKD-ANQLPTPSVSIGRSRPL-- 60

Query: 61  PQTYHDVEFGQGFRTYRQDM--------------SQRSEQ-------------------- 120
            QTY D+EFGQG RTYRQD               SQR EQ                    
Sbjct: 61  -QTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDT 120

Query: 121 --------SVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSD 167
                   S+ PDT+ SRRSE+ DRQDTRES IKDGGMAILAGAGAAIATAA VLGLSS 
Sbjct: 121 RSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSY 180

[Close]

BLAST of ClCG07G010400.1 vs. NCBI nr
Match: gi|700198393|gb|KGN53551.1| (hypothetical protein Csa_4G081290 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 3.2e-52
Identity = 128/209 (61.24%), Postives = 138/209 (66.03%), Query Frame = 1


Query: 1   MLLD-KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWP 60
           MLLD KPSILI IICT ++VV  ILCCFCIIG G Y+KK  +++LPTPSVSIGRSRPL  
Sbjct: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCG-YRKKD-ANQLPTPSVSIGRSRPL-- 60

Query: 61  PQTYHDVEFGQGFRTYRQDM--------------SQRSEQ-------------------- 120
            QTY D+EFGQG RTYRQD               SQR EQ                    
Sbjct: 61  -QTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDT 120

Query: 121 --------SVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSD 167
                   S+ PDT+ SRRSE+ DRQDTRES IKDGGMAILAGAGAAIATAA VLGLSS 
Sbjct: 121 RSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSY 180

[Close]

BLAST of ClCG07G010400.1 vs. NCBI nr
Match: gi|1009162364|ref|XP_015899396.1| (PREDICTED: loricrin-like [Ziziphus jujuba])

HSP 1 Score: 62.4 bits (150), Expect = 9.1e-07
Identity = 54/173 (31.21%), Postives = 76/173 (43.93%), Query Frame = 1


Query: 5   KPSILIFIICTCVIVVVVILCCFC-IIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTY 64
           K   ++ + C      ++IL C C IIGR   KKKQT H +   +V+         P T 
Sbjct: 2   KAGPIVILACISTFAALMILRCLCEIIGRA--KKKQTKHHVAKQTVAA--------PTT- 61

Query: 65  HDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGA 124
                    +   QD  +R  +    D   + +   TD+ +      KDGGM ILAG GA
Sbjct: 62  ---------QLAGQDDVERGREGT--DQTANAKETSTDQNN------KDGGMVILAGGGA 121

Query: 125 AIA-TAAAVLGLSSDQGGEDIDGGYVDT---RVDGTDADGVYG---GGGGGCG 170
           A+  + ++  G     GG    GGY++    R  G    G +G   GGGGGCG
Sbjct: 122 AVVPSKSSAGGGGGGGGGSTCSGGYLEPHGGRGGGCGGGGGFGGGCGGGGGCG 146

The following BLAST results are available for this feature:

BLAST of ClCG07G010400.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0B2_CUCSA	2.2e-52	61.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1	[more]

BLAST of ClCG07G010400.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198393\|gb\|KGN53551.1\|	3.2e-52	61.24	hypothetical protein Csa_4G081290 [Cucumis sativus]	[more]
gi\|1009162364\|ref\|XP_015899396.1\|	9.1e-07	31.21	PREDICTED: loricrin-like [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG07G010400	ClCG07G010400	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG07G010400.1	ClCG07G010400.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG07G010400.1.cds1	ClCG07G010400.1.cds1	CDS