Csa4G081290 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G081290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 5445576 .. 5446256 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATATTGTACATATTATACTGCTAAAGTCCCAATAATGTTATTGGATTTGAAACCTTCCATCCTCATTGTCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATAATTGGATGTGGTTATAGAAAGAAAGATGCAAATCAATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATATTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACGAAGCATTTCTTCGGACACACGAGGTTCTCAAAGAGGTGAACAAAGCATTTTTACTGACGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACGTAGTATTCTACCGGACACACAAAGTTCTCGAAGAAGTGAACAAATCGACCGACAAGATACTCGAGAAAGCAGAATCAAGGACGGTGGGATGGCCATCTTAGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGGGGAGAAGATATCGATGGTGATTATGTCGATAACTGTGATGATGGTACTGATGGCGGTGGCGTCTATGGTGGTGGTGTTGGCAGCAACAGCTATGGCAATGGCTCTCAACTTTGA

mRNA sequence

ATGTTATTGGATTTGAAACCTTCCATCCTCATTGTCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATAATTGGATGTGGTTATAGAAAGAAAGATGCAAATCAATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATATTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACGAAGCATTTCTTCGGACACACGAGGTTCTCAAAGAGGTGAACAAAGCATTTTTACTGACGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACGTAGTATTCTACCGGACACACAAAGTTCTCGAAGAAGTGAACAAATCGACCGACAAGATACTCGAGAAAGCAGAATCAAGGACGGTGGGATGGCCATCTTAGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGGGGAGAAGATATCGATGGTGATTATGTCGATAACTGTGATGATGGTACTGATGGCGGTGGCGTCTATGGTGGTGGTGTTGGCAGCAACAGCTATGGCAATGGCTCTCAACTTTGA

Coding sequence (CDS)

ATGTTATTGGATTTGAAACCTTCCATCCTCATTGTCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATAATTGGATGTGGTTATAGAAAGAAAGATGCAAATCAATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATATTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACGAAGCATTTCTTCGGACACACGAGGTTCTCAAAGAGGTGAACAAAGCATTTTTACTGACGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACGTAGTATTCTACCGGACACACAAAGTTCTCGAAGAAGTGAACAAATCGACCGACAAGATACTCGAGAAAGCAGAATCAAGGACGGTGGGATGGCCATCTTAGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGGGGAGAAGATATCGATGGTGATTATGTCGATAACTGTGATGATGGTACTGATGGCGGTGGCGTCTATGGTGGTGGTGTTGGCAGCAACAGCTATGGCAATGGCTCTCAACTTTGA

Protein sequence

MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVGSNSYGNGSQL*
Homology
[Close]
BLAST of Csa4G081290 vs. TrEMBL
Match: A0A0A0L0B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 1.2e-116
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

Query: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR 60
           MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR
Sbjct: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR 60

Query: 61  DIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSSRR 120
           DIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSSRR
Sbjct: 61  DIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSSRR 120

Query: 121 NERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGED 180
           NERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGED
Sbjct: 121 NERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGED 180

Query: 181 IDGDYVDNCDDGTDGGGVYGGGVGSNSYGNGSQL 215
           IDGDYVDNCDDGTDGGGVYGGGVGSNSYGNGSQL
Sbjct: 181 IDGDYVDNCDDGTDGGGVYGGGVGSNSYGNGSQL 214

[Close]
BLAST of Csa4G081290 vs. NCBI nr
Match: gi|700198393|gb|KGN53551.1| (hypothetical protein Csa_4G081290 [Cucumis sativus])

HSP 1 Score: 427.2 bits (1097), Expect = 1.7e-116
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

Query: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR 60
           MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR
Sbjct: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPLQTYR 60

Query: 61  DIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSSRR 120
           DIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSSRR
Sbjct: 61  DIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSSRR 120

Query: 121 NERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGED 180
           NERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGED
Sbjct: 121 NERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGED 180

Query: 181 IDGDYVDNCDDGTDGGGVYGGGVGSNSYGNGSQL 215
           IDGDYVDNCDDGTDGGGVYGGGVGSNSYGNGSQL
Sbjct: 181 IDGDYVDNCDDGTDGGGVYGGGVGSNSYGNGSQL 214

The following BLAST results are available for this feature:
BLAST of Csa4G081290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0B2_CUCSA1.2e-116100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1[more]
BLAST of Csa4G081290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198393|gb|KGN53551.1|1.7e-116100.00hypothetical protein Csa_4G081290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G081290.1Csa4G081290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G081290Cla005392Watermelon (97103) v1cuwmB311
Csa4G081290MELO3C016141Melon (DHL92) v3.5.1cumeB314
Csa4G081290ClCG07G010400Watermelon (Charleston Gray)cuwcgB324
Csa4G081290Lsi07G008640Bottle gourd (USVL1VR-Ls)culsiB304
Csa4G081290MELO3C016141.2Melon (DHL92) v3.6.1cumedB299
Csa4G081290Cla97C07G137100Watermelon (97103) v2cuwmbB321
Csa4G081290CSPI04G07700Wild cucumber (PI 183967)cpicuB182
Csa4G081290CmaCh04G006520Cucurbita maxima (Rimu)cmacuB708
Csa4G081290Cp4.1LG01g00790Cucurbita pepo (Zucchini)cpecuB399
Csa4G081290CsGy4G007600Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G081290Melon (DHL92) v3.5.1cumeB304
Csa4G081290Watermelon (Charleston Gray)cuwcgB322
Csa4G081290Watermelon (97103) v1cuwmB307
Csa4G081290Cucurbita pepo (Zucchini)cpecuB221
Csa4G081290Bottle gourd (USVL1VR-Ls)culsiB314
Csa4G081290Melon (DHL92) v3.6.1cumedB290
Csa4G081290Silver-seed gourdcarcuB0047
Csa4G081290Silver-seed gourdcarcuB0676
Csa4G081290Silver-seed gourdcarcuB0677
Csa4G081290Watermelon (97103) v2cuwmbB319
Csa4G081290Wax gourdcuwgoB365
Csa4G081290Wax gourdcuwgoB383
Csa4G081290Cucumber (Gy14) v1cgycuB389
Csa4G081290Cucurbita maxima (Rimu)cmacuB336
Csa4G081290Cucurbita maxima (Rimu)cmacuB337
Csa4G081290Cucurbita moschata (Rifu)cmocuB324
Csa4G081290Cucurbita moschata (Rifu)cmocuB325
Csa4G081290Cucurbita moschata (Rifu)cmocuB699