MELO3C015238 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015238
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionHydrophobic low temperature and salt responsive
Locationchr2 : 180402 .. 181318 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACTTACTTCTACTTCCTAATAATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTGTTTGTTTTGTGCAAATCAGAAGAAGAAGAAGAAAGAAAAAGAAAAATGGCAGACGAACGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTCTGATCATCATCTCTTCTTTATTCTTCTCTTAATTTTATTTTTCATTTTCAAATTTCATTATCTCACTAACTCTCTCTTTCAATTACTTCATCATTTCAGGTTGAGTTTTGGATCTGCTTGGTCCTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGATCACCGAATTCAAAGTCTGTTTTTATTCCCTGATTATCCTTTTCTTTTGCTAATTAACTTCTTCTTTTTTAGTTATTAAATTTGAATTATGTGTTTGATTTCACTTTTCAGGGATTGATGGAAGGAATTATTGGAACTCATCATCATGGTCTCTCCTCACCGACACTCTCCCTTCCTTTTTCTATTTTCCTTTTTGCTAATTTCTCTTGATCTCTGTTTTGTGTGTTTGCTTGTGTGATAATCATCCCATCCATCAAAGACATCTACACAATTGCTGCTTCTTCTTCTTTTTTTTTTTTTTTTTGTAATTTGTTAATTTGTAATTATTTGTTGGGGGTAATTTAATTGTGTGTCGTTCTTGTTGTATTGATTGAATTGGTTGCTGTAAAGAAGAAAAAGCAAAAAAAAGGAATAAGGACAAAGTAAGTTTGTTGAAGAATTGGAATGTGTTGAGTGTGGATTACGTTTCTTTCTTTCATTCTCAAAAGGTTCCCTTTCCCTATTATATTAAAAGTTTGTGCTC

mRNA sequence

CCACTTACTTCTACTTCCTAATAATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTGTTTGTTTTGTGCAAATCAGAAGAAGAAGAAGAAAGAAAAAGAAAAATGGCAGACGAACGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTTGAGTTTTGGATCTGCTTGGTCCTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGATCACCGAATTCAAAGGATTGATGGAAGGAATTATTGGAACTCATCATCATGGTCTCTCCTCACCGACACTCTCCCTTCCTTTTTCTATTTTCCTTTTTGCTAATTTCTCTTGATCTCTGTTTTGTGTGTTTGCTTGTGTGATAATCATCCCATCCATCAAAGACATCTACACAATTGCTGCTTCTTCTTCTTTTTTTTTTTTTTTTTGTAATTTGTTAATTTGTAATTATTTGTTGGGGGTAATTTAATTGTGTGTCGTTCTTGTTGTATTGATTGAATTGGTTGCTGTAAAGAAGAAAAAGCAAAAAAAAGGAATAAGGACAAAGTAAGTTTGTTGAAGAATTGGAATGTGTTGAGTGTGGATTACGTTTCTTTCTTTCATTCTCAAAAGGTTCCCTTTCCCTATTATATTAAAAGTTTGTGCTC

Coding sequence (CDS)

ATGGCAGACGAACGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTTGAGTTTTGGATCTGCTTGGTCCTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGA

Protein sequence

MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK*
Homology
[Close]
BLAST of MELO3C015238 vs. Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T NCIDIL+AI+LPPLGVFLKFGC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 4  TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

[Close]
BLAST of MELO3C015238 vs. Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T NCIDIL+AI+LPPLGVFLKFGC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 4  TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

[Close]
BLAST of MELO3C015238 vs. Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.9e-20
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1 

Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MAD  T  CIDI+LAI+LPPLGVF KFGC +EFWICL+LTFFGY+PGIIYAV+ ITK
Sbjct: 1  MADS-TATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

[Close]
BLAST of MELO3C015238 vs. Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.0e-18
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 

Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   ++I+LAI+LPPLGVFLKFGC+VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

[Close]
BLAST of MELO3C015238 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.5e-18
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1 

Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   +DI++AILLPPLGVFL+FGC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

[Close]
BLAST of MELO3C015238 vs. TrEMBL
Match: A0A0A0M1D6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.5e-24
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 

Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]
BLAST of MELO3C015238 vs. TrEMBL
Match: M0RN96_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.0e-22
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE T NCIDIL+AILLPPLGVFLKFGCQVEFWICL+LT FGY+PGIIYAVYAITK
Sbjct: 1  MADEGTVNCIDILVAILLPPLGVFLKFGCQVEFWICLLLTLFGYLPGIIYAVYAITK 57

[Close]
BLAST of MELO3C015238 vs. TrEMBL
Match: A0A059CWH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03713 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.0e-22
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 1   MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADE T NCIDILLAI+LPPLGVFLKFGCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 86  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 142

[Close]
BLAST of MELO3C015238 vs. TrEMBL
Match: A0A058ZTP7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_L01633 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.0e-22
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 1   MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADE T NCIDILLAI+LPPLGVFLKFGCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 61  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 117

[Close]
BLAST of MELO3C015238 vs. TrEMBL
Match: M0RSL9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.8e-22
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE T NCIDILLAI+LPPLGVFLKFGC++EFWICL+LT FGYIPGIIYAVYAITK
Sbjct: 1  MADEGTANCIDILLAIILPPLGVFLKFGCEMEFWICLLLTLFGYIPGIIYAVYAITK 57

[Close]
BLAST of MELO3C015238 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family)

HSP 1 Score: 90.9 bits (224), Expect = 2.8e-19
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 

Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   ++I+LAI+LPPLGVFLKFGC+VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

[Close]
BLAST of MELO3C015238 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family)

HSP 1 Score: 90.1 bits (222), Expect = 4.8e-19
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1 

Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   +DI++AILLPPLGVFL+FGC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

[Close]
BLAST of MELO3C015238 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 80.5 bits (197), Expect = 3.8e-16
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 

Query: 10 IDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAI 56
          ++I+LAILLPP+GVFL++GC VEFWICL+LT  GYIPGIIYA+Y +
Sbjct: 7  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

[Close]
BLAST of MELO3C015238 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family)

HSP 1 Score: 72.8 bits (177), Expect = 7.9e-14
Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 1 

Query: 10 IDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          +++L AI +PP+GVFL++G  +EFW+CL+LT F +IPG+IYA+Y +TK
Sbjct: 5  LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

[Close]
BLAST of MELO3C015238 vs. TAIR10
Match: AT2G24040.1 (AT2G24040.1 Low temperature and salt responsive protein family)

HSP 1 Score: 70.1 bits (170), Expect = 5.1e-13
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 9  CIDILLAILLPPLGVFLKFGC-QVEFWICLVLTFFGYIPGIIYAVYAI 56
          C +I +AILLPP+GV L+ GC  VEF+ICL+LT  GY+PGIIYA+YAI
Sbjct: 8  CCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55

[Close]
BLAST of MELO3C015238 vs. NCBI nr
Match: gi|659099264|ref|XP_008450512.1| (PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 5.5e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]
BLAST of MELO3C015238 vs. NCBI nr
Match: gi|700210895|gb|KGN65991.1| (hypothetical protein Csa_1G560745 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 3.6e-24
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 

Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]
BLAST of MELO3C015238 vs. NCBI nr
Match: gi|502112986|ref|XP_004494506.1| (PREDICTED: hydrophobic protein LTI6B-like [Cicer arietinum])

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-23
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE T NCIDILLAILLPPLGVFLKFGC VEFWICLVLTFFGYIPGIIYA+YAITK
Sbjct: 1  MADEGTANCIDILLAILLPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAIYAITK 57

[Close]
BLAST of MELO3C015238 vs. NCBI nr
Match: gi|629117630|gb|KCW82305.1| (hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis])

HSP 1 Score: 111.3 bits (277), Expect = 5.7e-22
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 1   MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADE T NCIDILLAI+LPPLGVFLKFGCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 86  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 142

[Close]
BLAST of MELO3C015238 vs. NCBI nr
Match: gi|629076871|gb|KCW44804.1| (hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis])

HSP 1 Score: 111.3 bits (277), Expect = 5.7e-22
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 1   MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADE T NCIDILLAI+LPPLGVFLKFGCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 61  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 117

The following BLAST results are available for this feature:
BLAST of MELO3C015238 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LTI6B_ORYSJ1.8e-2084.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1[more]
LTI6B_ORYSI1.8e-2084.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2[more]
LTI6A_ORYSJ6.9e-2077.19Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1[more]
RCI2B_ARATH5.0e-1873.08Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1[more]
RCI2A_ARATH8.5e-1875.00Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1[more]
BLAST of MELO3C015238 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1D6_CUCSA2.5e-2498.25Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1[more]
M0RN96_MUSAM4.0e-2289.47Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
A0A059CWH7_EUCGR4.0e-2291.23Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03713 PE=4 SV=1[more]
A0A058ZTP7_EUCGR4.0e-2291.23Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_L01633 PE=4 ... [more]
M0RSL9_MUSAM8.8e-2287.72Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
BLAST of MELO3C015238 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05890.12.8e-1973.08 Low temperature and salt responsive protein family[more]
AT3G05880.14.8e-1975.00 Low temperature and salt responsive protein family[more]
AT2G38905.13.8e-1671.74 Low temperature and salt responsive protein family[more]
AT1G57550.17.9e-1456.25 Low temperature and salt responsive protein family[more]
AT2G24040.15.1e-1366.67 Low temperature and salt responsive protein family[more]
BLAST of MELO3C015238 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099264|ref|XP_008450512.1|5.5e-25100.00PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo][more]
gi|700210895|gb|KGN65991.1|3.6e-2498.25hypothetical protein Csa_1G560745 [Cucumis sativus][more]
gi|502112986|ref|XP_004494506.1|6.7e-2392.98PREDICTED: hydrophobic protein LTI6B-like [Cicer arietinum][more]
gi|629117630|gb|KCW82305.1|5.7e-2291.23hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis][more]
gi|629076871|gb|KCW44804.1|5.7e-2291.23hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009409 response to cold
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45526melon EST collection version 4.0transcribed_cluster
MU45946melon EST collection version 4.0transcribed_cluster
MU46022melon EST collection version 4.0transcribed_cluster
MU48240melon EST collection version 4.0transcribed_cluster
MU48257melon EST collection version 4.0transcribed_cluster
MU53943melon EST collection version 4.0transcribed_cluster
MU57879melon EST collection version 4.0transcribed_cluster
MU57975melon EST collection version 4.0transcribed_cluster
MU62130melon EST collection version 4.0transcribed_cluster
MU62175melon EST collection version 4.0transcribed_cluster
MU62463melon EST collection version 4.0transcribed_cluster
MU63715melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015238T1MELO3C015238T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45946MU45946transcribed_cluster
MU46022MU46022transcribed_cluster
MU48257MU48257transcribed_cluster
MU53943MU53943transcribed_cluster
MU57879MU57879transcribed_cluster
MU62130MU62130transcribed_cluster
MU62463MU62463transcribed_cluster
MU48240MU48240transcribed_cluster
MU57975MU57975transcribed_cluster
MU62175MU62175transcribed_cluster
MU45526MU45526transcribed_cluster
MU63715MU63715transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 1..57
score: 3.7
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 9..55
score: 3.7
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 13..28
scor
NoneNo IPR availablePANTHERPTHR21659:SF19HYDROPHOBIC PROTEIN RCI2Bcoord: 1..57
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C015238ClCG03G017910Watermelon (Charleston Gray)mewcgB245
MELO3C015238Cla97C03G068310Watermelon (97103) v2mewmbB250
MELO3C015238CSPI01G25670Wild cucumber (PI 183967)cpimeB042
MELO3C015238CmaCh10G011850Cucurbita maxima (Rimu)cmameB068
MELO3C015238CmoCh10G012630Cucurbita moschata (Rifu)cmomeB060
MELO3C015238Lsi06G000230Bottle gourd (USVL1VR-Ls)lsimeB396
MELO3C015238CsaV3_1G038070Cucumber (Chinese Long) v3cucmeB042
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C015238Watermelon (97103) v2mewmbB242
MELO3C015238Wax gourdmewgoB308
MELO3C015238Melon (DHL92) v3.5.1memeB107
MELO3C015238Cucumber (Gy14) v1cgymeB031
MELO3C015238Cucumber (Gy14) v1cgymeB102
MELO3C015238Cucurbita maxima (Rimu)cmameB108
MELO3C015238Cucurbita maxima (Rimu)cmameB722
MELO3C015238Cucurbita moschata (Rifu)cmomeB103
MELO3C015238Cucurbita moschata (Rifu)cmomeB712
MELO3C015238Wild cucumber (PI 183967)cpimeB061
MELO3C015238Wild cucumber (PI 183967)cpimeB113
MELO3C015238Cucumber (Chinese Long) v2cumeB058
MELO3C015238Cucumber (Chinese Long) v2cumeB112
MELO3C015238Watermelon (Charleston Gray)mewcgB237
MELO3C015238Watermelon (97103) v1mewmB272
MELO3C015238Watermelon (97103) v1mewmB282
MELO3C015238Cucurbita pepo (Zucchini)cpemeB618
MELO3C015238Bottle gourd (USVL1VR-Ls)lsimeB105
MELO3C015238Cucumber (Gy14) v2cgybmeB054
MELO3C015238Silver-seed gourdcarmeB0473
MELO3C015238Cucumber (Chinese Long) v3cucmeB059
MELO3C015238Cucumber (Chinese Long) v3cucmeB119