MU48240 (transcribed_cluster) Melon (DHL92) v3.5.1

NameMU48240
Typetranscribed_cluster
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUnknown protein
Locationchr2 : 180326 .. 181318 (-)
Sequence length927
The following sequences are available for this feature:

transcribed_cluster sequence

AGCACAAACTTTTAATATAATAGGGAAAGGGAACCTTTGAGAATGAAAGAAAGAAACGTAATCCACACTCAACACATTCCAATTCTTCAACAAACTTACTTTGTCCTTATCCTTTTTTTTTTTTTTTTTTTTTTCTTCTTTACAGCAACCAATTCAATCAATACAACAAGAACGACACACAATTAAATTACCCCCACAAATAATTCAAATTACAAATTACAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGCCGCAATTGGGTAGATGTCTTTGAGGGAGGGGATGATTATCACCCAAGCAAACCCCCAAAACAGAGATCAAGAGAAATTAGCAAAAAGGAAAATAGAAAAAGGAAGGGAGAGTGTCGGTGAGGAGAGACCATGATGATGAGTTCCAATAATTCCTTCCATCAACCCCCGAAAAGTGAAATCAAACACATAATTCAAATTTAATAACTAAAAAAGAAGAAGTTAATTAGCAAAAGAAAAGGATAATCAGGGAATAAAAACAGACTTTGAATTCGGTGATCACTTGGGGATGGCATAAACAGCATAAATAATCCCAGGGATGTAACCAAAGAAAGTTAGGACCAAGCAGATCCAAAACTCAACCTGAAATGATGAAGTAATTGAAAGAGAGAGTTAGTGAGATAATGAAATTTGAAAATGAAAAATAAAATTAAGAGAAGAATAAAGAAGAGATGATGATCAGACTTGGCATCCAAATTTGAGAAAGACACCAAGAGGAGGGAGGAGAATAGCGAGGAGGATATCGATGCAATTTGTTGTTCGTTCGTCTGCCATTTTTCTTTTTCTTTCTTCTTCTTCTTCTGATTTGCACAAAACAAACAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTATTGGAATGAAGTAATGGGTAGTGATGAAGGT
Library categoryESTs
melon PFTP2 library2
BLAST of MU48240 vs. Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-06
Identity = 22/26 (84.62%), Postives = 22/26 (84.62%), Query Frame = -1

Query: 532 EFWICLVLTFFGYIPGIIYAVYAIPK 591
           EFWICL+LTF GYIPGIIYA+YAI K
Sbjct: 30  EFWICLLLTFLGYIPGIIYAIYAITK 55

Query: 592 610
           
Sbjct: 90  55

BLAST of MU48240 vs. Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-06
Identity = 22/26 (84.62%), Postives = 22/26 (84.62%), Query Frame = -1

Query: 532 EFWICLVLTFFGYIPGIIYAVYAIPK 591
           EFWICL+LTF GYIPGIIYA+YAI K
Sbjct: 30  EFWICLLLTFLGYIPGIIYAIYAITK 55

Query: 592 610
           
Sbjct: 90  55

BLAST of MU48240 vs. Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.0e-06
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = -1

Query: 532 VEFWICLVLTFFGYIPGIIYAVYAIPK 591
           +EFWICL+LTFFGY+PGIIYAV+ I K
Sbjct: 30  IEFWICLLLTFFGYLPGIIYAVWVITK 56

Query: 592 613
           
Sbjct: 90  56

BLAST of MU48240 vs. TrEMBL
Match: A0A0A0M1D6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-06
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = -1

Query: 532 QVEFWICLVLTFFGYIPGIIYAVYAIPK 591
           QVEFWICLVLTFFGYIPGIIYAVYAI K
Sbjct: 30  QVEFWICLVLTFFGYIPGIIYAVYAITK 57

Query: 592 616
           
Sbjct: 90  57

BLAST of MU48240 vs. TrEMBL
Match: A0A0A0M1D6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1)

HSP 1 Score: 42.4 bits (98), Expect = 1.2e+00
Identity = 20/31 (64.52%), Postives = 20/31 (64.52%), Query Frame = -1

Query: 712 MADERTTNCIDXXXXXXXXXXGVFLKFGCQV 771
           MADE TTNCID          GVFLKFGCQV
Sbjct: 1   MADEGTTNCIDILLAILLPPLGVFLKFGCQV 31

Query: 772 805
           
Sbjct: 61  31

BLAST of MU48240 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family)

HSP 1 Score: 51.6 bits (122), Expect = 1.0e-06
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -1

Query: 532 QVEFWICLVLTFFGYIPGIIYAVYAIPK 591
           +VEFWICL+LT FGY+PGI+YA+Y I K
Sbjct: 27  KVEFWICLILTLFGYLPGILYALYIITK 54

Query: 592 616
           
Sbjct: 87  54

BLAST of MU48240 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family)

HSP 1 Score: 51.2 bits (121), Expect = 1.3e-06
Identity = 21/27 (77.78%), Postives = 21/27 (77.78%), Query Frame = -1

Query: 532 VEFWICLVLTFFGYIPGIIYAVYAIPK 591
           VEFWICLVLT  GYIPGIIYA+Y + K
Sbjct: 28  VEFWICLVLTLLGYIPGIIYAIYVLTK 54

Query: 592 613
           
Sbjct: 88  54

BLAST of MU48240 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 48.5 bits (114), Expect = 8.5e-06
Identity = 19/25 (76.00%), Postives = 20/25 (80.00%), Query Frame = -1

Query: 538 VEFWICLVLTFFGYIPGIIYAVYAI 597
           VEFWICL+LT  GYIPGIIYA+Y +
Sbjct: 28  VEFWICLLLTILGYIPGIIYAIYVL 52

Query: 598 613
           
Sbjct: 88  52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LTI6B_ORYSJ6.1e-0684.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1[more]
LTI6B_ORYSI6.1e-0684.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2[more]
LTI6A_ORYSJ8.0e-0677.78Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0M1D6_CUCSA4.3e-0696.43Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1[more]
A0A0A0M1D6_CUCSA1.2e+0064.52Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G05890.11.0e-0671.43 Low temperature and salt responsive protein family[more]
AT3G05880.11.3e-0677.78 Low temperature and salt responsive protein family[more]
AT2G38905.18.5e-0676.00 Low temperature and salt responsive protein family[more]
Match NameE-valueIdentityDescription

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
MELO3C015238MELO3C015238gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
IA20YB23FM1IA20YB23FM1EST
IA28YN08RM1IA28YN08RM1EST