CSPI01G25670 (gene) Wild cucumber (PI 183967)

NameCSPI01G25670
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionLow temperature and salt responsive protein
LocationChr1 : 21087269 .. 21087677 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACGAAGGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTCTGATAATCATCTCTTAACTTTATTTTTCATTTTCAAATCCCATTATTTCACTAACTCTCTCTTTTAATCACTTCATAATTTCAGGTTGAGTTTTGGATCTGCTTGGTCTTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGATCATCCAATTCAAAGTCCGTTTTATTCCCTCATCATCCTAATTTTGATCTTTTGTTAATTAAATACTTTTTTTACAAAAAAATTAAAATTGAATTATGTGTGTTGGTTCGATTTCACTTTTCAGGGATTGATGGAAGAAATTATTGGA

mRNA sequence

ATGGCAGACGAAGGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTTGAGTTTTGGATCTGCTTGGTCTTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGA

Coding sequence (CDS)

ATGGCAGACGAAGGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTTGAGTTTTGGATCTGCTTGGTCTTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGA
BLAST of CSPI01G25670 vs. Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1

Query: 5  GTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          GT NCIDIL+AI+LPPLGVFLKFGC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

BLAST of CSPI01G25670 vs. Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1

Query: 5  GTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          GT NCIDIL+AI+LPPLGVFLKFGC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

BLAST of CSPI01G25670 vs. Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-19
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MAD  T  CIDI+LAI+LPPLGVF KFGC +EFWICL+LTFFGY+PGIIYAV+ ITK
Sbjct: 1  MADS-TATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

BLAST of CSPI01G25670 vs. Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.2e-17
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 1

Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   ++I+LAI+LPPLGVFLKFGC+VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

BLAST of CSPI01G25670 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.2e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   +DI++AILLPPLGVFL+FGC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

BLAST of CSPI01G25670 vs. TrEMBL
Match: A0A0A0M1D6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

BLAST of CSPI01G25670 vs. TrEMBL
Match: A0A058ZTP7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_L01633 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-22
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1   MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADEGT NCIDILLAI+LPPLGVFLKFGCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 61  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 117

BLAST of CSPI01G25670 vs. TrEMBL
Match: M0RN96_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-22
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGT NCIDIL+AILLPPLGVFLKFGCQVEFWICL+LT FGY+PGIIYAVYAITK
Sbjct: 1  MADEGTVNCIDILVAILLPPLGVFLKFGCQVEFWICLLLTLFGYLPGIIYAVYAITK 57

BLAST of CSPI01G25670 vs. TrEMBL
Match: A0A059CWH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03713 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-22
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1   MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADEGT NCIDILLAI+LPPLGVFLKFGCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 86  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 142

BLAST of CSPI01G25670 vs. TrEMBL
Match: M0RSL9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.2e-22
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGT NCIDILLAI+LPPLGVFLKFGC++EFWICL+LT FGYIPGIIYAVYAITK
Sbjct: 1  MADEGTANCIDILLAIILPPLGVFLKFGCEMEFWICLLLTLFGYIPGIIYAVYAITK 57

BLAST of CSPI01G25670 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family)

HSP 1 Score: 87.8 bits (216), Expect = 2.4e-18
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 1

Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   ++I+LAI+LPPLGVFLKFGC+VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

BLAST of CSPI01G25670 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family)

HSP 1 Score: 87.0 bits (214), Expect = 4.0e-18
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   +DI++AILLPPLGVFL+FGC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

BLAST of CSPI01G25670 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-15
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1

Query: 5  GTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAI 56
          G+   ++I+LAILLPP+GVFL++GC VEFWICL+LT  GYIPGIIYA+Y +
Sbjct: 2  GSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

BLAST of CSPI01G25670 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family)

HSP 1 Score: 69.3 bits (168), Expect = 8.7e-13
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 1

Query: 10 IDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          +++L AI +PP+GVFL++G  +EFW+CL+LT F +IPG+IYA+Y +TK
Sbjct: 5  LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

BLAST of CSPI01G25670 vs. TAIR10
Match: AT4G28088.1 (AT4G28088.1 Low temperature and salt responsive protein family)

HSP 1 Score: 66.2 bits (160), Expect = 7.4e-12
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1

Query: 5  GTTNCIDILLAILLPPLGVFLKFGC-QVEFWICLVLTFFGYIPGIIYAVYAI 56
          G   C +I++AIL+PPLGV L+ GC   EF ICL+LT  GY+PGIIYA+YAI
Sbjct: 4  GCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAI 55

BLAST of CSPI01G25670 vs. NCBI nr
Match: gi|700210895|gb|KGN65991.1| (hypothetical protein Csa_1G560745 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

BLAST of CSPI01G25670 vs. NCBI nr
Match: gi|659099264|ref|XP_008450512.1| (PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

BLAST of CSPI01G25670 vs. NCBI nr
Match: gi|502112986|ref|XP_004494506.1| (PREDICTED: hydrophobic protein LTI6B-like [Cicer arietinum])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGT NCIDILLAILLPPLGVFLKFGC VEFWICLVLTFFGYIPGIIYA+YAITK
Sbjct: 1  MADEGTANCIDILLAILLPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAIYAITK 57

BLAST of CSPI01G25670 vs. NCBI nr
Match: gi|629076871|gb|KCW44804.1| (hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis])

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-22
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1   MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADEGT NCIDILLAI+LPPLGVFLKFGCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 61  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 117

BLAST of CSPI01G25670 vs. NCBI nr
Match: gi|629117630|gb|KCW82305.1| (hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis])

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-22
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1   MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADEGT NCIDILLAI+LPPLGVFLKFGCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 86  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LTI6B_ORYSJ2.4e-2084.91Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1[more]
LTI6B_ORYSI2.4e-2084.91Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2[more]
LTI6A_ORYSJ3.4e-1977.19Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1[more]
RCI2B_ARATH4.2e-1773.08Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1[more]
RCI2A_ARATH7.2e-1775.00Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0M1D6_CUCSA1.5e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1[more]
A0A058ZTP7_EUCGR2.3e-2292.98Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_L01633 PE=4 ... [more]
M0RN96_MUSAM2.3e-2291.23Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
A0A059CWH7_EUCGR2.3e-2292.98Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03713 PE=4 SV=1[more]
M0RSL9_MUSAM5.2e-2289.47Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G05890.12.4e-1873.08 Low temperature and salt responsive protein family[more]
AT3G05880.14.0e-1875.00 Low temperature and salt responsive protein family[more]
AT2G38905.11.4e-1566.67 Low temperature and salt responsive protein family[more]
AT1G57550.18.7e-1356.25 Low temperature and salt responsive protein family[more]
AT4G28088.17.4e-1261.54 Low temperature and salt responsive protein family[more]
Match NameE-valueIdentityDescription
gi|700210895|gb|KGN65991.1|2.1e-24100.00hypothetical protein Csa_1G560745 [Cucumis sativus][more]
gi|659099264|ref|XP_008450512.1|1.8e-2398.25PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo][more]
gi|502112986|ref|XP_004494506.1|3.9e-2394.74PREDICTED: hydrophobic protein LTI6B-like [Cicer arietinum][more]
gi|629076871|gb|KCW44804.1|3.3e-2292.98hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis][more]
gi|629117630|gb|KCW82305.1|3.3e-2292.98hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009409 response to cold
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G25670.1CSPI01G25670.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 1..57
score: 7.4
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 9..55
score: 3.7
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 13..28
scor
NoneNo IPR availablePANTHERPTHR21659:SF19HYDROPHOBIC PROTEIN RCI2Bcoord: 1..57
score: 7.4