CSPI01G25670 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGACGAAGGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTCTGATAATCATCTCTTAACTTTATTTTTCATTTTCAAATCCCATTATTTCACTAACTCTCTCTTTTAATCACTTCATAATTTCAGGTTGAGTTTTGGATCTGCTTGGTCTTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGATCATCCAATTCAAAGTCCGTTTTATTCCCTCATCATCCTAATTTTGATCTTTTGTTAATTAAATACTTTTTTTACAAAAAAATTAAAATTGAATTATGTGTGTTGGTTCGATTTCACTTTTCAGGGATTGATGGAAGAAATTATTGGA ATGGCAGACGAAGGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTTGAGTTTTGGATCTGCTTGGTCTTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGA ATGGCAGACGAAGGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTTGAGTTTTGGATCTGCTTGGTCTTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGA
BLAST of CSPI01G25670 vs. Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 2.4e-20 Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1
BLAST of CSPI01G25670 vs. Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2) HSP 1 Score: 98.6 bits (244), Expect = 2.4e-20 Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1
BLAST of CSPI01G25670 vs. Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 3.4e-19 Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1
BLAST of CSPI01G25670 vs. Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 4.2e-17 Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 1
BLAST of CSPI01G25670 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 7.2e-17 Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1
BLAST of CSPI01G25670 vs. TrEMBL
Match: A0A0A0M1D6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 1.5e-24 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1
BLAST of CSPI01G25670 vs. TrEMBL
Match: A0A058ZTP7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_L01633 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 2.3e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CSPI01G25670 vs. TrEMBL
Match: M0RN96_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 2.3e-22 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CSPI01G25670 vs. TrEMBL
Match: A0A059CWH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03713 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 2.3e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CSPI01G25670 vs. TrEMBL
Match: M0RSL9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 5.2e-22 Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CSPI01G25670 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family) HSP 1 Score: 87.8 bits (216), Expect = 2.4e-18 Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 1
BLAST of CSPI01G25670 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family) HSP 1 Score: 87.0 bits (214), Expect = 4.0e-18 Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1
BLAST of CSPI01G25670 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family) HSP 1 Score: 78.6 bits (192), Expect = 1.4e-15 Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1
BLAST of CSPI01G25670 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family) HSP 1 Score: 69.3 bits (168), Expect = 8.7e-13 Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 1
BLAST of CSPI01G25670 vs. TAIR10
Match: AT4G28088.1 (AT4G28088.1 Low temperature and salt responsive protein family) HSP 1 Score: 66.2 bits (160), Expect = 7.4e-12 Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1
BLAST of CSPI01G25670 vs. NCBI nr
Match: gi|700210895|gb|KGN65991.1| (hypothetical protein Csa_1G560745 [Cucumis sativus]) HSP 1 Score: 119.4 bits (298), Expect = 2.1e-24 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1
BLAST of CSPI01G25670 vs. NCBI nr
Match: gi|659099264|ref|XP_008450512.1| (PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo]) HSP 1 Score: 116.3 bits (290), Expect = 1.8e-23 Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1
BLAST of CSPI01G25670 vs. NCBI nr
Match: gi|502112986|ref|XP_004494506.1| (PREDICTED: hydrophobic protein LTI6B-like [Cicer arietinum]) HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23 Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CSPI01G25670 vs. NCBI nr
Match: gi|629076871|gb|KCW44804.1| (hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis]) HSP 1 Score: 112.1 bits (279), Expect = 3.3e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CSPI01G25670 vs. NCBI nr
Match: gi|629117630|gb|KCW82305.1| (hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis]) HSP 1 Score: 112.1 bits (279), Expect = 3.3e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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