Lsi06G000230 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAAAAGATAGAGTGTGTTAGTGGTGATGTTTGTAAAAAGGGAAGTCTTAGTTGTAAGTTTTGTATGTGTGTGTATATATAATACCCCACCCACCATTTAATTCCCCCACTACTTCTAAACTCTCTACTATTACTCTCTCTCTCTCTCTCTCTGTTTCTCTTTCTTTGTGTAATCAGAAGAAGAAAAAAAACAAGAAATGGCAGACGAAGGCACAACAAACTGCATCGATATCCTTCTGGCTATTCTGCTCCCTCCTCTTGGTGTCTTTCTCAAATATGGCTGCCAAGTCTCATCTCTCTCTCTCTCTCTTCTTCCTCTTATCATCTTTTAATTTTTCTTTTTATATTTTCATTTTCATCCTTATAATTTACTTAATTTCTGTTCACTCCAGGTTGAATTCTGGATCTGCTTGGTTCTAACTTTCTTCGGATACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGATTCTCATCACAATTCTCTCTATTCAATGTTAGTTTTTCCATTATTTCTCCTTCTCTTTAAACTATTTCCTTTTTAGTTTCTATATATTTTTTTAAAATTTTGGTTTAATTTTATATTTTGAATTATGTTTATTTCAGGGGGTATGGGAGATTTAGGAAGGAATGATGGAAGAAATTGGAAAACTGATGATCAAATTAAACCACTCCCTTGTTCTCATATCTTTTTTTTTTTTTT TGAAAAGATAGAGTGTGTTAGTGGTGATGTTTGTAAAAAGGGAAGTCTTAGTTGTAAGTTTTGTATGTGTGTGTATATATAATACCCCACCCACCATTTAATTCCCCCACTACTTCTAAACTCTCTACTATTACTCTCTCTCTCTCTCTCTCTGTTTCTCTTTCTTTGTGTAATCAGAAGAAGAAAAAAAACAAGAAATGGCAGACGAAGGCACAACAAACTGCATCGATATCCTTCTGGCTATTCTGCTCCCTCCTCTTGGTGTCTTTCTCAAATATGGCTGCCAAGTTGAATTCTGGATCTGCTTGGTTCTAACTTTCTTCGGATACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGGGGTATGGGAGATTTAGGAAGGAATGATGGAAGAAATTGGAAAACTGATGATCAAATTAAACCACTCCCTTGTTCTCATATCTTTTTTTTTTTTTT ATGGCAGACGAAGGCACAACAAACTGCATCGATATCCTTCTGGCTATTCTGCTCCCTCCTCTTGGTGTCTTTCTCAAATATGGCTGCCAAGTTGAATTCTGGATCTGCTTGGTTCTAACTTTCTTCGGATACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGGGGTATGGGAGATTTAGGAAGGAATGA MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITKGYGRFRKE
BLAST of Lsi06G000230 vs. Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 6.0e-20 Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1
BLAST of Lsi06G000230 vs. Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2) HSP 1 Score: 97.4 bits (241), Expect = 6.0e-20 Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1
BLAST of Lsi06G000230 vs. Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 8.6e-19 Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1
BLAST of Lsi06G000230 vs. Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 8.0e-17 Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1
BLAST of Lsi06G000230 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 1.4e-16 Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1
BLAST of Lsi06G000230 vs. TrEMBL
Match: A0A0A0M1D6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 2.8e-24 Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1
BLAST of Lsi06G000230 vs. TrEMBL
Match: A0A059CWH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03713 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 4.4e-22 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of Lsi06G000230 vs. TrEMBL
Match: M0RN96_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 4.4e-22 Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of Lsi06G000230 vs. TrEMBL
Match: A0A058ZTP7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_L01633 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 4.4e-22 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of Lsi06G000230 vs. TrEMBL
Match: M0RSL9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 9.9e-22 Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of Lsi06G000230 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family) HSP 1 Score: 87.0 bits (214), Expect = 4.5e-18 Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1
BLAST of Lsi06G000230 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family) HSP 1 Score: 86.3 bits (212), Expect = 7.7e-18 Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1
BLAST of Lsi06G000230 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family) HSP 1 Score: 80.5 bits (197), Expect = 4.2e-16 Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1
BLAST of Lsi06G000230 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family) HSP 1 Score: 71.2 bits (173), Expect = 2.6e-13 Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 1
BLAST of Lsi06G000230 vs. TAIR10
Match: AT4G28088.1 (AT4G28088.1 Low temperature and salt responsive protein family) HSP 1 Score: 67.8 bits (164), Expect = 2.8e-12 Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1
BLAST of Lsi06G000230 vs. NCBI nr
Match: gi|700210895|gb|KGN65991.1| (hypothetical protein Csa_1G560745 [Cucumis sativus]) HSP 1 Score: 118.6 bits (296), Expect = 4.0e-24 Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1
BLAST of Lsi06G000230 vs. NCBI nr
Match: gi|659099264|ref|XP_008450512.1| (PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo]) HSP 1 Score: 115.5 bits (288), Expect = 3.4e-23 Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1
BLAST of Lsi06G000230 vs. NCBI nr
Match: gi|502112986|ref|XP_004494506.1| (PREDICTED: hydrophobic protein LTI6B-like [Cicer arietinum]) HSP 1 Score: 114.4 bits (285), Expect = 7.5e-23 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of Lsi06G000230 vs. NCBI nr
Match: gi|629076871|gb|KCW44804.1| (hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis]) HSP 1 Score: 111.3 bits (277), Expect = 6.4e-22 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of Lsi06G000230 vs. NCBI nr
Match: gi|629117630|gb|KCW82305.1| (hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis]) HSP 1 Score: 111.3 bits (277), Expect = 6.4e-22 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|