Lsi06G000230 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G000230
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionLow temperature and salt responsive protein
Locationchr06 : 225752 .. 226461 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAAAGATAGAGTGTGTTAGTGGTGATGTTTGTAAAAAGGGAAGTCTTAGTTGTAAGTTTTGTATGTGTGTGTATATATAATACCCCACCCACCATTTAATTCCCCCACTACTTCTAAACTCTCTACTATTACTCTCTCTCTCTCTCTCTCTGTTTCTCTTTCTTTGTGTAATCAGAAGAAGAAAAAAAACAAGAAATGGCAGACGAAGGCACAACAAACTGCATCGATATCCTTCTGGCTATTCTGCTCCCTCCTCTTGGTGTCTTTCTCAAATATGGCTGCCAAGTCTCATCTCTCTCTCTCTCTCTTCTTCCTCTTATCATCTTTTAATTTTTCTTTTTATATTTTCATTTTCATCCTTATAATTTACTTAATTTCTGTTCACTCCAGGTTGAATTCTGGATCTGCTTGGTTCTAACTTTCTTCGGATACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGATTCTCATCACAATTCTCTCTATTCAATGTTAGTTTTTCCATTATTTCTCCTTCTCTTTAAACTATTTCCTTTTTAGTTTCTATATATTTTTTTAAAATTTTGGTTTAATTTTATATTTTGAATTATGTTTATTTCAGGGGGTATGGGAGATTTAGGAAGGAATGATGGAAGAAATTGGAAAACTGATGATCAAATTAAACCACTCCCTTGTTCTCATATCTTTTTTTTTTTTTT

mRNA sequence

TGAAAAGATAGAGTGTGTTAGTGGTGATGTTTGTAAAAAGGGAAGTCTTAGTTGTAAGTTTTGTATGTGTGTGTATATATAATACCCCACCCACCATTTAATTCCCCCACTACTTCTAAACTCTCTACTATTACTCTCTCTCTCTCTCTCTCTGTTTCTCTTTCTTTGTGTAATCAGAAGAAGAAAAAAAACAAGAAATGGCAGACGAAGGCACAACAAACTGCATCGATATCCTTCTGGCTATTCTGCTCCCTCCTCTTGGTGTCTTTCTCAAATATGGCTGCCAAGTTGAATTCTGGATCTGCTTGGTTCTAACTTTCTTCGGATACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGGGGTATGGGAGATTTAGGAAGGAATGATGGAAGAAATTGGAAAACTGATGATCAAATTAAACCACTCCCTTGTTCTCATATCTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCAGACGAAGGCACAACAAACTGCATCGATATCCTTCTGGCTATTCTGCTCCCTCCTCTTGGTGTCTTTCTCAAATATGGCTGCCAAGTTGAATTCTGGATCTGCTTGGTTCTAACTTTCTTCGGATACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGGGGTATGGGAGATTTAGGAAGGAATGA

Protein sequence

MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITKGYGRFRKE
BLAST of Lsi06G000230 vs. Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.0e-20
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1

Query: 5  GTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          GT NCIDIL+AI+LPPLGVFLK+GC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

BLAST of Lsi06G000230 vs. Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 6.0e-20
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1

Query: 5  GTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          GT NCIDIL+AI+LPPLGVFLK+GC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

BLAST of Lsi06G000230 vs. Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.6e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MAD  T  CIDI+LAI+LPPLGVF K+GC +EFWICL+LTFFGY+PGIIYAV+ ITK
Sbjct: 1  MADS-TATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

BLAST of Lsi06G000230 vs. Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.0e-17
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1

Query: 6  TTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   ++I+LAI+LPPLGVFLK+GC+VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

BLAST of Lsi06G000230 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-16
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 6  TTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   +DI++AILLPPLGVFL++GC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

BLAST of Lsi06G000230 vs. TrEMBL
Match: A0A0A0M1D6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.8e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGTTNCIDILLAILLPPLGVFLK+GCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

BLAST of Lsi06G000230 vs. TrEMBL
Match: A0A059CWH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03713 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-22
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1   MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADEGT NCIDILLAI+LPPLGVFLK+GCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 86  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 142

BLAST of Lsi06G000230 vs. TrEMBL
Match: M0RN96_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-22
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGT NCIDIL+AILLPPLGVFLK+GCQVEFWICL+LT FGY+PGIIYAVYAITK
Sbjct: 1  MADEGTVNCIDILVAILLPPLGVFLKFGCQVEFWICLLLTLFGYLPGIIYAVYAITK 57

BLAST of Lsi06G000230 vs. TrEMBL
Match: A0A058ZTP7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_L01633 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-22
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1   MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADEGT NCIDILLAI+LPPLGVFLK+GCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 61  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 117

BLAST of Lsi06G000230 vs. TrEMBL
Match: M0RSL9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.9e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGT NCIDILLAI+LPPLGVFLK+GC++EFWICL+LT FGYIPGIIYAVYAITK
Sbjct: 1  MADEGTANCIDILLAIILPPLGVFLKFGCEMEFWICLLLTLFGYIPGIIYAVYAITK 57

BLAST of Lsi06G000230 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family)

HSP 1 Score: 87.0 bits (214), Expect = 4.5e-18
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1

Query: 6  TTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   ++I+LAI+LPPLGVFLK+GC+VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

BLAST of Lsi06G000230 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family)

HSP 1 Score: 86.3 bits (212), Expect = 7.7e-18
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 6  TTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   +DI++AILLPPLGVFL++GC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

BLAST of Lsi06G000230 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 80.5 bits (197), Expect = 4.2e-16
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1

Query: 5  GTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAI 56
          G+   ++I+LAILLPP+GVFL+YGC VEFWICL+LT  GYIPGIIYA+Y +
Sbjct: 2  GSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

BLAST of Lsi06G000230 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-13
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 1

Query: 10 IDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          +++L AI +PP+GVFL+YG  +EFW+CL+LT F +IPG+IYA+Y +TK
Sbjct: 5  LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

BLAST of Lsi06G000230 vs. TAIR10
Match: AT4G28088.1 (AT4G28088.1 Low temperature and salt responsive protein family)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1

Query: 5  GTTNCIDILLAILLPPLGVFLKYGC-QVEFWICLVLTFFGYIPGIIYAVYAI 56
          G   C +I++AIL+PPLGV L++GC   EF ICL+LT  GY+PGIIYA+YAI
Sbjct: 4  GCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAI 55

BLAST of Lsi06G000230 vs. NCBI nr
Match: gi|700210895|gb|KGN65991.1| (hypothetical protein Csa_1G560745 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGTTNCIDILLAILLPPLGVFLK+GCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

BLAST of Lsi06G000230 vs. NCBI nr
Match: gi|659099264|ref|XP_008450512.1| (PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-23
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE TTNCIDILLAILLPPLGVFLK+GCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

BLAST of Lsi06G000230 vs. NCBI nr
Match: gi|502112986|ref|XP_004494506.1| (PREDICTED: hydrophobic protein LTI6B-like [Cicer arietinum])

HSP 1 Score: 114.4 bits (285), Expect = 7.5e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1  MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGT NCIDILLAILLPPLGVFLK+GC VEFWICLVLTFFGYIPGIIYA+YAITK
Sbjct: 1  MADEGTANCIDILLAILLPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAIYAITK 57

BLAST of Lsi06G000230 vs. NCBI nr
Match: gi|629076871|gb|KCW44804.1| (hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis])

HSP 1 Score: 111.3 bits (277), Expect = 6.4e-22
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1   MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADEGT NCIDILLAI+LPPLGVFLK+GCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 61  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 117

BLAST of Lsi06G000230 vs. NCBI nr
Match: gi|629117630|gb|KCW82305.1| (hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis])

HSP 1 Score: 111.3 bits (277), Expect = 6.4e-22
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1

Query: 1   MADEGTTNCIDILLAILLPPLGVFLKYGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
           MADEGT NCIDILLAI+LPPLGVFLK+GCQVEFWICLVLT FG+IPGIIYAVYAITK
Sbjct: 86  MADEGTMNCIDILLAIILPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LTI6B_ORYSJ6.0e-2083.02Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1[more]
LTI6B_ORYSI6.0e-2083.02Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2[more]
LTI6A_ORYSJ8.6e-1975.44Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1[more]
RCI2B_ARATH8.0e-1771.15Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1[more]
RCI2A_ARATH1.4e-1673.08Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0M1D6_CUCSA2.8e-2498.25Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560745 PE=4 SV=1[more]
A0A059CWH7_EUCGR4.4e-2291.23Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03713 PE=4 SV=1[more]
M0RN96_MUSAM4.4e-2289.47Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
A0A058ZTP7_EUCGR4.4e-2291.23Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_L01633 PE=4 ... [more]
M0RSL9_MUSAM9.9e-2287.72Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G05890.14.5e-1871.15 Low temperature and salt responsive protein family[more]
AT3G05880.17.7e-1873.08 Low temperature and salt responsive protein family[more]
AT2G38905.14.2e-1668.63 Low temperature and salt responsive protein family[more]
AT1G57550.12.6e-1358.33 Low temperature and salt responsive protein family[more]
AT4G28088.12.8e-1261.54 Low temperature and salt responsive protein family[more]
Match NameE-valueIdentityDescription
gi|700210895|gb|KGN65991.1|4.0e-2498.25hypothetical protein Csa_1G560745 [Cucumis sativus][more]
gi|659099264|ref|XP_008450512.1|3.4e-2396.49PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo][more]
gi|502112986|ref|XP_004494506.1|7.5e-2392.98PREDICTED: hydrophobic protein LTI6B-like [Cicer arietinum][more]
gi|629076871|gb|KCW44804.1|6.4e-2291.23hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis][more]
gi|629117630|gb|KCW82305.1|6.4e-2291.23hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009409 response to cold
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000230.1Lsi06G000230.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 1..57
score: 2.7
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 9..55
score: 1.9
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 13..28
scor
NoneNo IPR availablePANTHERPTHR21659:SF19HYDROPHOBIC PROTEIN RCI2Bcoord: 1..57
score: 2.7