MELO3C015118.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015118.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr02 : 7952106 .. 7952637 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCCTCTCTCACTTTCTCTCTCTAAAATTACTCTCTCTCTCTCTCTCTCTCTCTAACTATGCCCAGGCCTCGACACCAACGTCAGCTCTCTCAAGTTCTCCCACCGGACTTCATCTCCGGCGAGGATCCGTCTCAGATCTTGGACTTCTCCATCGGAGTCCCCGGTGCTGTTTCCGGCCAACCCCATCAGCCATCTGCAGCTACTGCAAATGCTGCTGCCACCGCCGCCACCGTCACCGTACTTCAGCGTTCAAAGAATCCCGCCGGCCAGGAGGGCTCCGGCGCCGGTCACTTCTCTCAGCTTCCGAAAACGGCGCCGTCTACCTGAACACCACCCAACTCTCCGTCTGTCTTGTAACCTTTTCTTTTTCTAATTTTTTTACTTTAAATTTCTCTCTCTAGATTTCATGTCTTTGGAATGTTAGTTTTTCTTTTTCTTTTAGGTCAATGAGAGATCCTTTCTCTCTTTTATCTCAAACCCAAAAATAAAATTTGATGAAATGGAAGAAGGGTTGTTCATGTGGTTCTTC

mRNA sequence

ATTCCCTCTCTCACTTTCTCTCTCTAAAATTACTCTCTCTCTCTCTCTCTCTCTCTAACTATGCCCAGGCCTCGACACCAACGTCAGCTCTCTCAAGTTCTCCCACCGGACTTCATCTCCGGCGAGGATCCGTCTCAGATCTTGGACTTCTCCATCGGAGTCCCCGGTGCTGTTTCCGGCCAACCCCATCAGCCATCTGCAGCTACTGCAAATGCTGCTGCCACCGCCGCCACCGTCACCGTACTTCAGCGTTCAAAGAATCCCGCCGGCCAGGAGGGCTCCGGCGCCGGTCACTTCTCTCAGCTTCCGAAAACGGCGCCGTCTACCTGAACACCACCCAACTCTCCGTCTGTCTTGTAACCTTTTCTTTTTCTAATTTTTTTACTTTAAATTTCTCTCTCTAGATTTCATGTCTTTGGAATGTTAGTTTTTCTTTTTCTTTTAGGTCAATGAGAGATCCTTTCTCTCTTTTATCTCAAACCCAAAAATAAAATTTGATGAAATGGAAGAAGGGTTGTTCATGTGGTTCTTC

Coding sequence (CDS)

ATGCCCAGGCCTCGACACCAACGTCAGCTCTCTCAAGTTCTCCCACCGGACTTCATCTCCGGCGAGGATCCGTCTCAGATCTTGGACTTCTCCATCGGAGTCCCCGGTGCTGTTTCCGGCCAACCCCATCAGCCATCTGCAGCTACTGCAAATGCTGCTGCCACCGCCGCCACCGTCACCGTACTTCAGCGTTCAAAGAATCCCGCCGGCCAGGAGGGCTCCGGCGCCGGTCACTTCTCTCAGCTTCCGAAAACGGCGCCGTCTACCTGA

Protein sequence

MPRPRHQRQLSQVLPPDFISGEDPSQILDFSIGVPGAVSGQPHQPSAATANAAATAATVTVLQRSKNPAGQEGSGAGHFSQLPKTAPST

Homology

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BLAST of MELO3C015118.2 vs. NCBI nr
Match: KGN66547.1 (hypothetical protein Csa_1G629040 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-28
Identity = 73/89 (82.02%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MPRPRHQRQLSQVLPPDFISGEDPSQILDFSIGVPGAVSGQPHQPSAATANAAXXXATVT 60
          MPRPRHQRQLSQVLPPDFIS EDPSQILDFSIGV GAVSGQPHQ         XXX    
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQXXXXXXXXXXXXXXXX 60

Query: 61 VLQRSKNPAGQEGSGAGHFSQLPKTAPST 90
           LQRSKNPAGQEGSGAGHFSQLPKTAPST
Sbjct: 61 XLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

[Close]

BLAST of MELO3C015118.2 vs. TrEMBL
Match: tr|A0A0A0M0A1|A0A0A0M0A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 73/89 (82.02%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MPRPRHQRQLSQVLPPDFISGEDPSQILDFSIGVPGAVSGQPHQPSAATANAAXXXATVT 60
          MPRPRHQRQLSQVLPPDFIS EDPSQILDFSIGV GAVSGQPHQ         XXX    
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQXXXXXXXXXXXXXXXX 60

Query: 61 VLQRSKNPAGQEGSGAGHFSQLPKTAPST 90
           LQRSKNPAGQEGSGAGHFSQLPKTAPST
Sbjct: 61 XLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

The following BLAST results are available for this feature:

BLAST of MELO3C015118.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66547.1	2.4e-28	82.02	hypothetical protein Csa_1G629040 [Cucumis sativus]	[more]

BLAST of MELO3C015118.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015118.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015118.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0A1\|A0A0A0M0A1_CUCSA	1.6e-28	82.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015118.2.1	MELO3C015118.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015118.2	Csa1G629040	Cucumber (Chinese Long) v2	cumedB033
MELO3C015118.2	CSPI01G31020	Wild cucumber (PI 183967)	cpimedB036
MELO3C015118.2	Cucsa.355590	Cucumber (Gy14) v1	cgymedB576
MELO3C015118.2	CmaCh10G008930	Cucurbita maxima (Rimu)	cmamedB069
MELO3C015118.2	CmaCh11G008850	Cucurbita maxima (Rimu)	cmamedB111
MELO3C015118.2	CmoCh10G009300	Cucurbita moschata (Rifu)	cmomedB061
MELO3C015118.2	CmoCh11G008960	Cucurbita moschata (Rifu)	cmomedB104
MELO3C015118.2	Lsi06G005800	Bottle gourd (USVL1VR-Ls)	lsimedB418
MELO3C015118.2	Cp4.1LG18g01900	Cucurbita pepo (Zucchini)	cpemedB387
MELO3C015118.2	Cp4.1LG04g12300	Cucurbita pepo (Zucchini)	cpemedB733
MELO3C015118.2	Cla007358	Watermelon (97103) v1	medwmB264
MELO3C015118.2	ClCG03G012580	Watermelon (Charleston Gray)	medwcgB237
MELO3C015118.2	Cla97C03G062890	Watermelon (97103) v2	medwmbB235
MELO3C015118.2	CsaV3_1G043420	Cucumber (Chinese Long) v3	cucmedB039

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015118.2	Silver-seed gourd	carmedB0884
MELO3C015118.2	Silver-seed gourd	carmedB0953
MELO3C015118.2	Wax gourd	medwgoB305
MELO3C015118.2	Cucumber (Gy14) v2	cgybmedB032